Wall clock time and date at job start Tue Mar 31 2020 01:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34677 * 117.00164 * 2 1 4 4 O 1.21423 * 119.99979 * 359.97438 * 3 2 1 5 5 C 1.48068 * 119.99740 * 180.02562 * 3 2 1 6 6 C 1.39291 * 119.65725 * 180.25613 * 5 3 2 7 7 C 1.39757 * 118.89958 * 180.26533 * 6 5 3 8 8 C 1.48143 * 120.88869 * 179.75611 * 7 6 5 9 9 O 1.21511 * 119.99833 * 359.72084 * 8 7 6 10 10 N 1.34774 * 119.99959 * 179.72054 * 8 7 6 11 11 C 1.46500 * 120.00106 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47481 * 325.00655 * 11 10 8 13 13 C 1.53001 * 109.46746 * 85.00589 * 11 10 8 14 14 C 1.50694 * 109.47517 * 205.00289 * 11 10 8 15 15 H 1.08002 * 120.00179 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00472 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99350 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 120.00608 * 179.97438 * 16 14 11 19 19 H 1.48493 * 109.47326 * 270.00340 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00090 * 18 16 14 21 21 H 1.48498 * 109.47210 * 149.99801 * 18 16 14 22 22 C 1.39806 * 118.22004 * 359.49041 * 7 6 5 23 23 C 1.38519 * 119.19979 * 0.24278 * 22 7 6 24 24 N 1.31451 * 121.03739 * 0.02562 * 23 22 7 25 25 H 1.08997 * 109.47307 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46679 * 300.00027 * 1 2 3 27 27 H 1.08999 * 109.47206 * 60.00163 * 1 2 3 28 28 H 1.07998 * 120.55369 * 0.02562 * 6 5 3 29 29 H 0.97003 * 119.99853 * 0.02562 * 10 8 7 30 30 H 1.09000 * 109.47809 * 59.99872 * 13 11 10 31 31 H 1.09000 * 109.47703 * 180.02562 * 13 11 10 32 32 H 1.09007 * 109.47140 * 300.00315 * 13 11 10 33 33 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 34 34 H 1.08005 * 120.40112 * 180.22581 * 22 7 6 35 35 H 1.08002 * 119.48105 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4021 2.2183 -0.0005 5 6 3.5421 1.2773 -0.0006 6 6 4.1671 2.5221 0.0048 7 6 5.5636 2.5767 -0.0015 8 6 6.2739 3.8768 -0.0015 9 8 5.6417 4.9145 -0.0011 10 7 7.6212 3.9086 -0.0019 11 6 8.3237 5.1942 -0.0025 12 1 7.7589 5.9165 -0.5919 13 6 8.4584 5.7023 1.4344 14 6 9.6943 5.0175 -0.6034 15 1 10.0105 4.0450 -0.9506 16 6 10.5448 6.0975 -0.7100 17 7 10.1596 7.2819 -0.2877 18 14 12.2441 5.8784 -1.4541 19 1 13.2135 5.5367 -0.3825 20 1 12.2079 4.7833 -2.4565 21 1 12.6615 7.1410 -2.1152 22 6 6.2723 1.3716 -0.0020 23 6 5.5726 0.1762 -0.0015 24 7 4.2582 0.1602 -0.0010 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.5823 3.4301 0.0099 29 1 8.1259 3.0801 -0.0026 30 1 9.0231 4.9800 2.0238 31 1 8.9806 6.6591 1.4341 32 1 7.4670 5.8300 1.8691 33 1 10.7581 8.0417 -0.3623 34 1 7.3524 1.3727 -0.0031 35 1 6.1155 -0.7575 -0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267546129.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:17 Heat of formation + Delta-G solvation = -104.786039 kcal Electronic energy + Delta-G solvation = -20596.588700 eV Core-core repulsion = 17173.167489 eV Total energy + Delta-G solvation = -3423.421211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.13980 -41.16233 -40.02853 -37.67842 -36.84945 -34.70400 -33.82358 -32.81677 -30.82670 -28.87874 -27.36213 -26.36504 -25.40109 -23.39986 -22.58932 -21.34818 -20.02626 -18.83006 -18.26482 -17.69682 -17.58610 -17.43345 -16.87918 -16.50501 -16.20564 -16.09762 -15.41862 -15.09063 -14.90436 -14.69705 -14.46078 -14.16482 -13.74284 -13.24304 -13.03123 -12.98264 -12.89870 -12.73160 -12.30267 -12.14486 -12.06145 -11.87563 -11.36753 -11.20862 -11.11485 -10.75811 -10.61016 -10.50024 -9.89335 -8.17891 -6.35842 -0.82309 -0.38017 1.09362 1.38444 1.47631 1.48516 1.58737 1.87575 2.18508 2.46549 2.67118 2.99860 3.13573 3.49137 3.62093 3.66947 3.71602 4.11484 4.27898 4.32347 4.49814 4.55087 4.69693 4.73814 4.82347 4.90193 5.05880 5.09978 5.29882 5.37667 5.53574 5.64700 5.85075 6.06357 6.30359 6.63856 6.69519 6.77708 7.24526 7.40540 8.88648 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.039250 B = 0.003368 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.198102 B = 8312.653804 C = 8768.446113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.338 6.338 3 C 0.527 3.473 4 O -0.522 6.522 5 C 0.072 3.928 6 C -0.064 4.064 7 C -0.098 4.098 8 C 0.540 3.460 9 O -0.587 6.587 10 N -0.686 5.686 11 C 0.270 3.730 12 H 0.001 0.999 13 C -0.137 4.137 14 C -0.546 4.546 15 H 0.081 0.919 16 C 0.014 3.986 17 N -0.919 5.919 18 Si 0.974 3.026 19 H -0.270 1.270 20 H -0.261 1.261 21 H -0.291 1.291 22 C -0.085 4.085 23 C 0.112 3.888 24 N -0.430 5.430 25 H 0.139 0.861 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.139 0.861 29 H 0.410 0.590 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.011 0.989 33 H 0.265 0.735 34 H 0.185 0.815 35 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.370 -19.422 0.990 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.252 6.252 3 C 0.370 3.630 4 O -0.411 6.411 5 C -0.062 4.062 6 C -0.086 4.086 7 C -0.109 4.109 8 C 0.327 3.673 9 O -0.469 6.469 10 N -0.335 5.335 11 C 0.166 3.834 12 H 0.019 0.981 13 C -0.195 4.195 14 C -0.584 4.584 15 H 0.099 0.901 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.799 3.201 19 H -0.196 1.196 20 H -0.185 1.185 21 H -0.217 1.217 22 C -0.105 4.105 23 C -0.049 4.049 24 N -0.143 5.143 25 H 0.157 0.843 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.157 0.843 29 H 0.247 0.753 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.202 0.798 35 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.451 -18.974 1.005 21.685 hybrid contribution 0.986 1.396 -0.279 1.731 sum -9.466 -17.578 0.726 19.978 Atomic orbital electron populations 1.23711 0.73916 1.06281 1.02887 1.86647 1.25315 1.30394 1.82874 1.20799 0.87892 0.82009 0.72264 1.90866 1.66408 1.37107 1.46717 1.19771 0.91108 0.89592 1.05764 1.22041 0.94357 0.98695 0.93461 1.20339 0.93575 0.94343 1.02628 1.18582 0.83182 0.88472 0.77089 1.90745 1.67666 1.35991 1.52489 1.46152 1.04805 1.11549 1.70992 1.18455 0.90967 0.80366 0.93562 0.98106 1.21931 0.97724 1.02593 0.97292 1.21531 0.98716 0.96645 1.41543 0.90112 1.25820 1.02791 0.94566 0.95455 1.70059 1.37991 1.00736 1.46889 0.85309 0.78604 0.77577 0.78644 1.19567 1.18479 1.21664 1.23184 1.03912 0.91107 0.92295 1.23687 0.88017 0.99643 0.93510 1.67587 1.09988 1.29120 1.07563 0.84310 0.91583 0.91605 0.84335 0.75296 0.93510 0.91323 0.97010 0.92543 0.79818 0.75882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.56 113.37 1.20 1.56 16 2 O -0.34 -7.70 10.38 -55.86 -0.58 -8.28 16 3 C 0.53 14.68 7.95 70.43 0.56 15.24 16 4 O -0.52 -16.99 16.11 20.09 0.32 -16.66 16 5 C 0.07 1.97 6.75 41.88 0.28 2.26 16 6 C -0.06 -1.98 9.20 22.89 0.21 -1.77 16 7 C -0.10 -2.88 5.91 -19.90 -0.12 -2.99 16 8 C 0.54 21.35 7.76 86.87 0.67 22.02 16 9 O -0.59 -29.16 16.11 -3.75 -0.06 -29.22 16 10 N -0.69 -26.53 5.03 -448.71 -2.26 -28.78 16 11 C 0.27 13.42 2.56 44.24 0.11 13.53 16 12 H 0.00 0.06 7.58 -2.39 -0.02 0.04 16 13 C -0.14 -6.71 9.26 71.98 0.67 -6.04 16 14 C -0.55 -27.36 8.73 25.60 0.22 -27.14 16 15 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 16 C 0.01 0.72 5.30 84.66 0.45 1.17 16 17 N -0.92 -51.49 11.32 21.45 0.24 -51.24 16 18 Si 0.97 40.25 29.54 68.60 2.03 42.27 16 19 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 22 C -0.08 -1.58 9.62 22.72 0.22 -1.37 16 23 C 0.11 1.75 11.17 84.82 0.95 2.70 16 24 N -0.43 -9.72 10.09 -185.11 -1.87 -11.59 16 25 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.14 4.86 7.33 -2.91 -0.02 4.84 16 29 H 0.41 12.17 6.67 -92.71 -0.62 11.55 16 30 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 32 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.27 14.12 8.31 -92.70 -0.77 13.35 16 34 H 0.18 2.22 6.53 -2.91 -0.02 2.21 16 35 H 0.22 1.25 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -73.09 313.63 3.77 -69.32 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.52 Total: 15.01 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 5.43 Total: 19.18 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -3.88 Total: -91.61 kcal Atomic # 8 Polarization: -53.85 SS G_CDS: -0.32 Total: -54.17 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.27 kcal Total: -73.09 3.77 -69.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267546129.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.467 kcal (2) G-P(sol) polarization free energy of solvation -73.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds