Wall clock time and date at job start Tue Mar 31 2020 00:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47241 * 232.71516 * 3 2 1 5 5 C 1.37098 * 120.00266 * 263.93198 * 4 3 2 6 6 H 1.08000 * 120.00316 * 199.74861 * 5 4 3 7 7 C 1.38955 * 119.99701 * 19.74725 * 5 4 3 8 8 N 1.31403 * 119.99956 * 21.75124 * 7 5 4 9 9 Si 1.86802 * 119.99742 * 201.74868 * 7 5 4 10 10 H 1.48498 * 109.47195 * 90.00442 * 9 7 5 11 11 H 1.48505 * 109.46757 * 210.00547 * 9 7 5 12 12 H 1.48503 * 109.47265 * 330.00053 * 9 7 5 13 13 C 1.34775 * 119.99904 * 83.92558 * 4 3 2 14 14 O 1.21298 * 120.00274 * 180.02562 * 13 4 3 15 15 C 1.50693 * 120.00171 * 0.02562 * 13 4 3 16 16 C 1.53005 * 109.47634 * 179.97438 * 15 13 4 17 17 N 1.46496 * 109.47669 * 179.97438 * 16 15 13 18 18 C 1.33875 * 122.76408 * 269.71861 * 17 16 15 19 19 O 1.21226 * 125.39538 * 359.96682 * 18 17 16 20 20 C 1.51314 * 109.20346 * 179.84290 * 18 17 16 21 21 C 1.54225 * 103.55979 * 0.37715 * 20 18 17 22 22 C 1.33881 * 122.75925 * 89.99586 * 17 16 15 23 23 O 1.21232 * 125.39558 * 359.97438 * 22 17 16 24 24 H 4.40640 * 5.51385 * 180.02562 * 4 1 2 25 25 H 1.09005 * 109.47032 * 112.71809 * 3 2 1 26 26 H 1.08999 * 109.47653 * 352.71874 * 3 2 1 27 27 H 0.96997 * 119.99992 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47640 * 300.00002 * 15 13 4 29 29 H 1.09005 * 109.47549 * 59.99886 * 15 13 4 30 30 H 1.08996 * 109.46900 * 300.00812 * 16 15 13 31 31 H 1.09005 * 109.46454 * 59.99572 * 16 15 13 32 32 H 1.09001 * 110.79315 * 241.77210 * 20 18 17 33 33 H 1.09003 * 110.55343 * 118.87190 * 20 18 17 34 34 H 1.09004 * 110.61003 * 241.26789 * 21 20 18 35 35 H 1.08997 * 110.60386 * 118.29356 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 0.8376 1.0989 5 6 3.4802 2.1433 0.8647 6 1 4.1231 2.6643 1.5586 7 6 3.0039 2.7962 -0.2656 8 7 1.9232 2.3579 -0.8712 9 14 3.9000 4.2972 -0.9243 10 1 4.9261 3.8687 -1.9085 11 1 2.9273 5.2035 -1.5859 12 1 4.5587 5.0125 0.1981 13 6 3.2423 0.3240 2.3403 14 8 3.6459 1.0170 3.2503 15 6 2.8622 -1.1113 2.5977 16 6 3.0782 -1.4388 4.0766 17 7 2.7080 -2.8340 4.3270 18 6 1.4708 -3.2029 4.6813 19 8 0.5313 -2.4524 4.8352 20 6 1.4304 -4.7053 4.8564 21 6 2.8763 -5.1443 4.5480 22 6 3.5805 -3.8444 4.2256 23 8 4.7493 -3.7351 3.9230 24 1 -1.0502 -0.0003 -0.0001 25 1 3.0091 0.3977 -0.9480 26 1 3.0098 -1.0185 0.1302 27 1 1.5905 2.8140 -1.6600 28 1 1.8133 -1.2610 2.3416 29 1 3.4825 -1.7668 1.9864 30 1 4.1271 -1.2892 4.3324 31 1 2.4581 -0.7833 4.6882 32 1 0.7333 -5.1584 4.1514 33 1 1.1610 -4.9642 5.8804 34 1 2.8986 -5.8157 3.6895 35 1 3.3272 -5.6190 5.4194 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281558534.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:43 Heat of formation + Delta-G solvation = -30.011500 kcal Electronic energy + Delta-G solvation = -21504.865635 eV Core-core repulsion = 18084.686892 eV Total energy + Delta-G solvation = -3420.178743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.87275 -38.69606 -38.56666 -35.90664 -35.29330 -33.97542 -32.16390 -31.23292 -30.15874 -26.49650 -26.30771 -25.31184 -23.42624 -22.42360 -19.53997 -18.97261 -17.88383 -17.42338 -16.90094 -16.61561 -16.46284 -15.88903 -14.85908 -14.69195 -14.31987 -14.28626 -14.26361 -14.01893 -13.88346 -13.34644 -12.97096 -12.61383 -12.28851 -12.09314 -11.86175 -11.61593 -11.59920 -11.02609 -10.86377 -10.65102 -10.48034 -10.32913 -10.05732 -9.73990 -9.37166 -9.26137 -8.91921 -8.46506 -7.87311 -6.33610 -3.87951 1.44662 2.50741 2.66403 3.15159 3.25938 3.30715 3.65365 3.90182 3.92166 4.03972 4.06182 4.18827 4.23709 4.59299 4.88088 5.02604 5.17200 5.31130 5.32375 5.32668 5.36362 5.43928 5.50573 5.73464 5.90774 6.11503 6.29072 6.32703 6.68799 6.86691 7.01308 7.27827 7.56225 7.73776 8.03390 8.40207 8.80939 9.11053 9.33244 9.87283 10.67077 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026957 B = 0.004674 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.439789 B = 5989.310560 C = 6418.575571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.117 4.117 3 C 0.233 3.767 4 N -0.437 5.437 5 C -0.318 4.318 6 H 0.105 0.895 7 C 0.033 3.967 8 N -0.860 5.860 9 Si 0.922 3.078 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.457 3.543 14 O -0.584 6.584 15 C -0.146 4.146 16 C 0.118 3.882 17 N -0.573 5.573 18 C 0.522 3.478 19 O -0.476 6.476 20 C -0.157 4.157 21 C -0.157 4.157 22 C 0.523 3.477 23 O -0.480 6.480 24 H 0.199 0.801 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.268 0.732 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 -16.467 5.510 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.119 4.119 3 C 0.109 3.891 4 N -0.155 5.155 5 C -0.445 4.445 6 H 0.122 0.878 7 C -0.172 4.172 8 N -0.497 5.497 9 Si 0.748 3.252 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.245 3.755 14 O -0.468 6.468 15 C -0.187 4.187 16 C -0.002 4.002 17 N -0.316 5.316 18 C 0.310 3.690 19 O -0.347 6.347 20 C -0.197 4.197 21 C -0.197 4.197 22 C 0.311 3.689 23 O -0.351 6.351 24 H 0.216 0.784 25 H 0.125 0.875 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.130 -15.536 5.694 16.585 hybrid contribution -0.110 0.861 -0.669 1.095 sum -1.240 -14.676 5.026 15.562 Atomic orbital electron populations 1.24274 0.95368 1.05171 1.02611 1.23119 0.94322 0.96135 0.98288 1.18212 0.84375 0.92781 0.93711 1.43664 1.55741 1.10987 1.05115 1.19665 1.28439 0.87633 1.08734 0.87771 1.25318 0.94944 0.99084 0.97877 1.70091 1.17808 1.41384 1.20399 0.86001 0.79130 0.80893 0.79160 1.20310 1.21105 1.19356 1.19715 0.84473 0.88298 0.83002 1.90532 1.51358 1.62172 1.42754 1.21826 1.03194 0.97422 0.96237 1.21545 1.03669 0.77850 0.97139 1.46896 1.12575 1.10866 1.61268 1.20831 0.81660 0.91736 0.74760 1.90812 1.37629 1.59666 1.46591 1.22471 0.98223 0.92519 1.06472 1.22473 0.94717 0.96504 1.05962 1.20832 0.85924 0.86854 0.75249 1.90796 1.14841 1.85973 1.43524 0.78370 0.87523 0.92042 0.92118 0.89632 0.90040 0.88159 0.88179 0.86213 0.86361 0.86237 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.42 19.25 29.55 0.57 -4.85 16 2 C -0.12 -2.66 10.75 -37.12 -0.40 -3.06 16 3 C 0.23 5.20 4.91 -6.83 -0.03 5.16 16 4 N -0.44 -11.17 2.60 -117.94 -0.31 -11.48 16 5 C -0.32 -8.80 9.28 -14.93 -0.14 -8.94 16 6 H 0.10 3.04 7.42 -52.49 -0.39 2.65 16 7 C 0.03 0.85 4.83 -17.47 -0.08 0.77 16 8 N -0.86 -22.78 9.59 55.50 0.53 -22.24 16 9 Si 0.92 20.60 29.61 -169.99 -5.03 15.57 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.46 11.23 7.56 -10.99 -0.08 11.15 16 14 O -0.58 -16.11 15.65 5.54 0.09 -16.02 16 15 C -0.15 -2.79 4.63 -27.88 -0.13 -2.92 16 16 C 0.12 2.05 4.84 -4.04 -0.02 2.03 16 17 N -0.57 -7.80 2.55 -115.34 -0.29 -8.09 16 18 C 0.52 6.48 8.08 -11.09 -0.09 6.39 16 19 O -0.48 -7.87 17.47 5.60 0.10 -7.77 16 20 C -0.16 -0.99 7.03 -26.94 -0.19 -1.18 16 21 C -0.16 -0.96 7.03 -26.94 -0.19 -1.15 16 22 C 0.52 6.26 8.08 -11.08 -0.09 6.17 16 23 O -0.48 -7.51 17.48 5.60 0.10 -7.42 16 24 H 0.20 3.46 7.80 -54.08 -0.42 3.04 16 25 H 0.11 2.49 6.60 -51.93 -0.34 2.14 16 26 H 0.06 1.15 6.70 -51.93 -0.35 0.80 16 27 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.09 1.66 7.49 -51.93 -0.39 1.27 16 29 H 0.08 1.42 7.42 -51.93 -0.39 1.04 16 30 H 0.10 1.80 7.79 -51.93 -0.40 1.39 16 31 H 0.10 1.86 7.78 -51.93 -0.40 1.46 16 32 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 312.41 15.07 4.71 4.71 Total: -1.00 -34.95 312.41 -4.90 -39.84 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -3.91 Total: 3.34 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -0.88 Total: 9.57 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.07 Total: -41.81 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: 0.28 Total: -31.21 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.95 -4.90 -39.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281558534.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.833 kcal (2) G-P(sol) polarization free energy of solvation -34.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds