Wall clock time and date at job start Tue Mar 31 2020 00:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47241 * 232.71516 * 3 2 1 5 5 C 1.37098 * 120.00266 * 263.93198 * 4 3 2 6 6 H 1.08000 * 120.00316 * 199.74861 * 5 4 3 7 7 C 1.38955 * 119.99701 * 19.74725 * 5 4 3 8 8 N 1.31403 * 119.99956 * 21.75124 * 7 5 4 9 9 Si 1.86802 * 119.99742 * 201.74868 * 7 5 4 10 10 H 1.48498 * 109.47195 * 90.00442 * 9 7 5 11 11 H 1.48505 * 109.46757 * 210.00547 * 9 7 5 12 12 H 1.48503 * 109.47265 * 330.00053 * 9 7 5 13 13 C 1.34775 * 119.99904 * 83.92558 * 4 3 2 14 14 O 1.21298 * 120.00274 * 180.02562 * 13 4 3 15 15 C 1.50693 * 120.00171 * 0.02562 * 13 4 3 16 16 C 1.53005 * 109.47634 * 179.97438 * 15 13 4 17 17 N 1.46496 * 109.47669 * 179.97438 * 16 15 13 18 18 C 1.33875 * 122.76408 * 269.71861 * 17 16 15 19 19 O 1.21226 * 125.39538 * 359.96682 * 18 17 16 20 20 C 1.51314 * 109.20346 * 179.84290 * 18 17 16 21 21 C 1.54225 * 103.55979 * 0.37715 * 20 18 17 22 22 C 1.33881 * 122.75925 * 89.99586 * 17 16 15 23 23 O 1.21232 * 125.39558 * 359.97438 * 22 17 16 24 24 H 4.40640 * 5.51385 * 180.02562 * 4 1 2 25 25 H 1.09005 * 109.47032 * 112.71809 * 3 2 1 26 26 H 1.08999 * 109.47653 * 352.71874 * 3 2 1 27 27 H 0.96997 * 119.99992 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47640 * 300.00002 * 15 13 4 29 29 H 1.09005 * 109.47549 * 59.99886 * 15 13 4 30 30 H 1.08996 * 109.46900 * 300.00812 * 16 15 13 31 31 H 1.09005 * 109.46454 * 59.99572 * 16 15 13 32 32 H 1.09001 * 110.79315 * 241.77210 * 20 18 17 33 33 H 1.09003 * 110.55343 * 118.87190 * 20 18 17 34 34 H 1.09004 * 110.61003 * 241.26789 * 21 20 18 35 35 H 1.08997 * 110.60386 * 118.29356 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 0.8376 1.0989 5 6 3.4802 2.1433 0.8647 6 1 4.1231 2.6643 1.5586 7 6 3.0039 2.7962 -0.2656 8 7 1.9232 2.3579 -0.8712 9 14 3.9000 4.2972 -0.9243 10 1 4.9261 3.8687 -1.9085 11 1 2.9273 5.2035 -1.5859 12 1 4.5587 5.0125 0.1981 13 6 3.2423 0.3240 2.3403 14 8 3.6459 1.0170 3.2503 15 6 2.8622 -1.1113 2.5977 16 6 3.0782 -1.4388 4.0766 17 7 2.7080 -2.8340 4.3270 18 6 1.4708 -3.2029 4.6813 19 8 0.5313 -2.4524 4.8352 20 6 1.4304 -4.7053 4.8564 21 6 2.8763 -5.1443 4.5480 22 6 3.5805 -3.8444 4.2256 23 8 4.7493 -3.7351 3.9230 24 1 -1.0502 -0.0003 -0.0001 25 1 3.0091 0.3977 -0.9480 26 1 3.0098 -1.0185 0.1302 27 1 1.5905 2.8140 -1.6600 28 1 1.8133 -1.2610 2.3416 29 1 3.4825 -1.7668 1.9864 30 1 4.1271 -1.2892 4.3324 31 1 2.4581 -0.7833 4.6882 32 1 0.7333 -5.1584 4.1514 33 1 1.1610 -4.9642 5.8804 34 1 2.8986 -5.8157 3.6895 35 1 3.3272 -5.6190 5.4194 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281558534.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:42 Heat of formation + Delta-G solvation = -54.284609 kcal Electronic energy + Delta-G solvation = -21505.918196 eV Core-core repulsion = 18084.686892 eV Total energy + Delta-G solvation = -3421.231304 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.85017 -40.60141 -39.62318 -37.28948 -36.92631 -35.09321 -34.04664 -33.09260 -31.47186 -28.33748 -27.06522 -27.06132 -25.05480 -23.25389 -21.00294 -20.37918 -19.74336 -18.72955 -18.37902 -17.85789 -17.55281 -17.46563 -16.54757 -16.41726 -16.00928 -15.59066 -15.27211 -15.04201 -14.85259 -14.82240 -14.35441 -14.04836 -13.91162 -13.63837 -13.45468 -13.33319 -12.80229 -12.57474 -12.35969 -12.17901 -12.03928 -11.64753 -11.22114 -11.14617 -11.05639 -10.98981 -10.70692 -10.41028 -9.88647 -8.35971 -5.99076 0.52112 1.33947 1.40261 1.47442 1.53837 1.73353 1.81145 2.08428 2.28344 2.34641 2.99230 3.11448 3.25572 3.32071 3.69533 3.75723 3.81081 3.84546 3.96461 4.24876 4.27664 4.35771 4.55906 4.66131 4.81387 4.82055 4.86819 4.96575 4.99074 5.36018 5.43745 5.87536 6.00088 6.37326 6.37489 6.74922 7.07527 7.09329 7.33557 7.89069 8.62582 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026957 B = 0.004674 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.439789 B = 5989.310560 C = 6418.575571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.157 4.157 3 C 0.235 3.765 4 N -0.448 5.448 5 C -0.357 4.357 6 H 0.075 0.925 7 C 0.005 3.995 8 N -0.869 5.869 9 Si 0.987 3.013 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.278 1.278 13 C 0.443 3.557 14 O -0.626 6.626 15 C -0.124 4.124 16 C 0.126 3.874 17 N -0.580 5.580 18 C 0.513 3.487 19 O -0.528 6.528 20 C -0.136 4.136 21 C -0.135 4.135 22 C 0.515 3.485 23 O -0.524 6.524 24 H 0.233 0.767 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.273 0.727 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.368 -19.165 4.988 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.159 4.159 3 C 0.112 3.888 4 N -0.165 5.165 5 C -0.484 4.484 6 H 0.093 0.907 7 C -0.199 4.199 8 N -0.505 5.505 9 Si 0.810 3.190 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.203 1.203 13 C 0.232 3.768 14 O -0.514 6.514 15 C -0.165 4.165 16 C 0.003 3.997 17 N -0.323 5.323 18 C 0.305 3.695 19 O -0.402 6.402 20 C -0.175 4.175 21 C -0.174 4.174 22 C 0.307 3.693 23 O -0.399 6.399 24 H 0.249 0.751 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.167 0.833 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.139 -18.298 5.151 19.129 hybrid contribution 0.147 1.720 -0.500 1.797 sum -1.992 -16.578 4.651 17.333 Atomic orbital electron populations 1.25138 0.96347 1.03549 1.00876 1.23385 0.94951 0.97652 0.99873 1.18282 0.84710 0.93792 0.92003 1.43888 1.55580 1.10812 1.06258 1.19579 1.29902 0.89225 1.09709 0.90679 1.26029 0.95193 1.01568 0.97135 1.70176 1.17957 1.42173 1.20236 0.85048 0.78229 0.77444 0.78265 1.18742 1.20205 1.20287 1.20606 0.83547 0.90283 0.82348 1.90487 1.53107 1.63819 1.43993 1.21630 1.03177 0.93915 0.97801 1.21103 1.02360 0.80713 0.95488 1.47125 1.14031 1.09426 1.61669 1.22042 0.80131 0.94414 0.72912 1.90787 1.38968 1.61648 1.48781 1.22616 0.99039 0.86640 1.09182 1.22621 0.93302 0.93019 1.08433 1.21992 0.85286 0.88340 0.73636 1.90778 1.16827 1.86735 1.45531 0.75086 0.88903 0.88673 0.91675 0.89541 0.88118 0.89582 0.90476 0.83316 0.83192 0.83179 0.83091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.86 19.25 74.32 1.43 -8.43 16 2 C -0.16 -7.09 10.75 31.12 0.33 -6.75 16 3 C 0.23 10.58 4.91 84.57 0.42 10.99 16 4 N -0.45 -23.70 2.60 -645.42 -1.68 -25.38 16 5 C -0.36 -20.60 9.28 84.04 0.78 -19.82 16 6 H 0.08 4.67 7.42 -2.91 -0.02 4.64 16 7 C 0.00 0.26 4.83 84.93 0.41 0.67 16 8 N -0.87 -46.03 9.59 21.66 0.21 -45.83 16 9 Si 0.99 42.65 29.61 68.60 2.03 44.68 16 10 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 11 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 13 C 0.44 22.77 7.56 87.65 0.66 23.44 16 14 O -0.63 -36.82 15.65 -3.09 -0.05 -36.87 16 15 C -0.12 -4.89 4.63 29.85 0.14 -4.75 16 16 C 0.13 4.57 4.84 86.38 0.42 4.99 16 17 N -0.58 -15.46 2.55 -756.65 -1.93 -17.40 16 18 C 0.51 11.95 8.08 87.99 0.71 12.66 16 19 O -0.53 -17.43 17.47 -2.86 -0.05 -17.48 16 20 C -0.14 -1.07 7.03 30.46 0.21 -0.85 16 21 C -0.13 -0.99 7.03 30.46 0.21 -0.77 16 22 C 0.52 11.41 8.08 87.99 0.71 12.12 16 23 O -0.52 -16.12 17.48 -2.88 -0.05 -16.18 16 24 H 0.23 7.46 7.80 -4.41 -0.03 7.42 16 25 H 0.09 4.39 6.60 -2.38 -0.02 4.38 16 26 H 0.10 3.52 6.70 -2.39 -0.02 3.51 16 27 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 28 H 0.09 3.39 7.49 -2.39 -0.02 3.37 16 29 H 0.10 3.52 7.42 -2.38 -0.02 3.50 16 30 H 0.09 3.31 7.79 -2.39 -0.02 3.29 16 31 H 0.08 3.10 7.78 -2.38 -0.02 3.09 16 32 H 0.15 0.48 8.14 -2.39 -0.02 0.47 16 33 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.15 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -81.93 312.41 6.03 -75.89 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.11 Total: 15.07 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 6.44 Total: 23.49 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -3.40 Total: -88.60 kcal Atomic # 8 Polarization: -70.38 SS G_CDS: -0.15 Total: -70.53 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -81.93 6.03 -75.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281558534.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.607 kcal (2) G-P(sol) polarization free energy of solvation -81.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds