Wall clock time and date at job start Tue Mar 31 2020 01:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21264 * 119.99762 * 2 1 4 4 C 1.47184 * 120.00378 * 179.97438 * 2 1 3 5 5 C 1.39769 * 120.13675 * 256.16926 * 4 2 1 6 6 C 1.38576 * 119.74321 * 179.97438 * 5 4 2 7 7 N 1.39714 * 119.98792 * 180.02562 * 6 5 4 8 8 C 1.46501 * 119.99734 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46880 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47093 * 180.02562 * 9 8 7 11 11 H 1.08005 * 120.00197 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00047 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99885 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00002 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46896 * 90.00535 * 14 12 10 16 16 H 1.48500 * 109.47096 * 210.00089 * 14 12 10 17 17 H 1.48497 * 109.47224 * 330.00612 * 14 12 10 18 18 C 1.39065 * 120.01966 * 359.74844 * 6 5 4 19 19 C 1.38252 * 120.27078 * 0.50726 * 18 6 5 20 20 C 1.37949 * 120.26064 * 359.49161 * 19 18 6 21 21 N 1.48018 * 120.01213 * 180.22955 * 20 19 18 22 22 O 1.21798 * 120.00056 * 5.85664 * 21 20 19 23 23 O 1.21802 * 120.00061 * 185.85322 * 21 20 19 24 24 H 1.08997 * 109.47446 * 269.99791 * 1 2 3 25 25 H 1.09000 * 109.47182 * 30.00083 * 1 2 3 26 26 H 1.09004 * 109.46743 * 149.99792 * 1 2 3 27 27 H 1.07995 * 120.13059 * 359.95463 * 5 4 2 28 28 H 0.97006 * 120.00213 * 0.02562 * 7 6 5 29 29 H 1.08998 * 109.47064 * 299.99645 * 8 7 6 30 30 H 1.08997 * 109.46938 * 59.99758 * 8 7 6 31 31 H 1.09005 * 109.47317 * 300.00099 * 9 8 7 32 32 H 1.09005 * 109.47246 * 60.00381 * 9 8 7 33 33 H 0.96998 * 120.00046 * 180.02562 * 13 12 10 34 34 H 1.07993 * 119.86430 * 180.27424 * 18 6 5 35 35 H 1.07999 * 119.86547 * 179.76492 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 2.8441 -1.7373 1.1745 6 6 3.5347 -2.9387 1.1659 7 7 4.1371 -3.4063 2.3366 8 6 4.8676 -4.6761 2.3276 9 6 5.4253 -4.9534 3.7251 10 6 6.1773 -6.2593 3.7157 11 1 6.2499 -6.8343 2.8043 12 6 6.7719 -6.7207 4.8710 13 7 7.4278 -7.8606 4.8630 14 14 6.6459 -5.7267 6.4476 15 1 5.4352 -6.1432 7.1999 16 1 7.8523 -5.9645 7.2804 17 1 6.5501 -4.2825 6.1159 18 6 3.6233 -3.6819 -0.0062 19 6 3.0334 -3.2224 -1.1690 20 6 2.3432 -2.0279 -1.1734 21 7 1.7095 -1.5436 -2.4203 22 8 1.7050 -2.2475 -3.4143 23 8 1.1925 -0.4413 -2.4523 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 2.7711 -1.1606 2.0846 28 1 4.0716 -2.8901 3.1553 29 1 4.1924 -5.4817 2.0391 30 1 5.6893 -4.6175 1.6139 31 1 6.1006 -4.1478 4.0133 32 1 4.6038 -5.0119 4.4392 33 1 7.8458 -8.1854 5.6758 34 1 4.1583 -4.6200 -0.0089 35 1 3.1095 -3.8030 -2.0765 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286933683.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:18 Heat of formation + Delta-G solvation = -20.409888 kcal Electronic energy + Delta-G solvation = -20603.374731 eV Core-core repulsion = 17183.612345 eV Total energy + Delta-G solvation = -3419.762386 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.23099 -40.25643 -39.00052 -36.55046 -36.28392 -33.42673 -32.13837 -31.64330 -29.94762 -29.46234 -26.30532 -24.84015 -23.96010 -22.44742 -21.08925 -20.38697 -19.02952 -18.56507 -17.66725 -17.53277 -17.01497 -16.24186 -15.77149 -15.43982 -14.92306 -14.80355 -14.55663 -14.37272 -13.98211 -13.44178 -13.26460 -12.86667 -12.68518 -12.35734 -12.07622 -11.74414 -11.62097 -11.54966 -11.18325 -11.13713 -10.93196 -10.43869 -10.27639 -10.13060 -10.08205 -9.58573 -9.57459 -8.81217 -7.93536 -6.30720 -4.33177 -0.13678 0.67184 1.37463 1.44455 1.60273 3.10621 3.10931 3.14299 3.18585 3.20445 3.57159 4.19920 4.20277 4.54012 4.68674 4.73542 4.86072 5.02045 5.11652 5.12989 5.29528 5.35091 5.56509 5.61115 5.72120 5.73306 5.75182 6.00220 6.14642 6.38553 6.63380 6.91179 7.00249 7.06855 7.33103 7.49580 7.65698 8.20071 8.70396 9.28526 10.81821 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031288 B = 0.003378 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.691583 B = 8287.500811 C = 9015.440447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.409 3.591 3 O -0.436 6.436 4 C -0.036 4.036 5 C -0.174 4.174 6 C 0.277 3.723 7 N -0.713 5.713 8 C 0.120 3.880 9 C -0.022 4.022 10 C -0.530 4.530 11 H 0.076 0.924 12 C 0.073 3.927 13 N -0.893 5.893 14 Si 0.881 3.119 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.267 1.267 18 C -0.190 4.190 19 C 0.002 3.998 20 C -0.102 4.102 21 N 0.045 4.955 22 O -0.169 6.169 23 O -0.187 6.187 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.145 0.855 28 H 0.406 0.594 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.024 0.976 32 H 0.020 0.980 33 H 0.267 0.733 34 H 0.153 0.847 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.165 11.098 -7.184 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.283 3.717 3 O -0.308 6.308 4 C -0.040 4.040 5 C -0.198 4.198 6 C 0.163 3.837 7 N -0.333 5.333 8 C -0.002 4.002 9 C -0.059 4.059 10 C -0.569 4.569 11 H 0.094 0.906 12 C -0.131 4.131 13 N -0.531 5.531 14 Si 0.708 3.292 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.192 1.192 18 C -0.213 4.213 19 C -0.018 4.018 20 C -0.190 4.190 21 N 0.557 4.443 22 O -0.383 6.383 23 O -0.395 6.395 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.098 0.902 27 H 0.163 0.837 28 H 0.241 0.759 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.170 0.830 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.300 11.112 -6.442 17.108 hybrid contribution -0.095 0.481 0.915 1.039 sum -11.395 11.594 -5.526 17.170 Atomic orbital electron populations 1.22149 0.92053 1.05627 1.04292 1.22444 0.92282 0.86793 0.70139 1.90601 1.72096 1.33241 1.34831 1.20054 0.96182 0.95711 0.92039 1.20535 1.03953 0.97597 0.97714 1.18147 0.87156 0.90592 0.87777 1.45704 1.54122 1.24753 1.08722 1.21840 0.94657 0.81986 1.01697 1.19774 0.96445 0.98679 0.91029 1.20819 1.33767 1.03953 0.98316 0.90560 1.24986 0.94373 0.94752 0.98946 1.69882 1.34468 1.19927 1.28805 0.86765 0.78003 0.80933 0.83451 1.20109 1.21049 1.19170 1.20867 1.06915 1.03081 0.90460 1.20671 0.90175 0.91353 0.99603 1.20613 1.13322 1.00830 0.84236 1.43467 0.98438 0.99980 1.02426 1.94513 1.63678 1.55282 1.24840 1.94504 1.47178 1.07422 1.90370 0.88461 0.88281 0.90163 0.83712 0.75874 0.91411 0.91438 0.95783 0.96215 0.92293 0.82971 0.82732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.15 36.01 0.33 -1.28 16 2 C 0.41 4.99 4.55 -30.68 -0.14 4.85 16 3 O -0.44 -6.63 17.86 5.57 0.10 -6.53 16 4 C -0.04 -0.44 5.53 -105.09 -0.58 -1.02 16 5 C -0.17 -1.89 9.64 -38.88 -0.37 -2.27 16 6 C 0.28 3.19 6.65 -83.83 -0.56 2.63 16 7 N -0.71 -8.76 5.73 -58.67 -0.34 -9.09 16 8 C 0.12 1.85 4.85 -4.04 -0.02 1.83 16 9 C -0.02 -0.43 4.15 -27.89 -0.12 -0.54 16 10 C -0.53 -13.37 9.66 -34.44 -0.33 -13.70 16 11 H 0.08 2.06 7.99 -52.48 -0.42 1.65 16 12 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 13 N -0.89 -25.56 13.96 55.43 0.77 -24.78 16 14 Si 0.88 19.68 27.47 -169.99 -4.67 15.01 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.27 -5.63 6.54 56.52 0.37 -5.26 16 18 C -0.19 -2.09 9.31 -39.27 -0.37 -2.46 16 19 C 0.00 0.03 9.54 -39.68 -0.38 -0.35 16 20 C -0.10 -1.30 6.88 -79.45 -0.55 -1.85 16 21 N 0.04 0.63 4.45 34.20 0.15 0.79 16 22 O -0.17 -2.45 18.46 -29.46 -0.54 -2.99 16 23 O -0.19 -2.79 15.30 -29.47 -0.45 -3.24 16 24 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.08 0.69 7.81 -51.93 -0.41 0.28 16 27 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.41 4.43 8.48 -40.82 -0.35 4.08 16 29 H 0.07 1.03 7.93 -51.93 -0.41 0.61 16 30 H 0.07 1.04 7.95 -51.93 -0.41 0.63 16 31 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 32 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 33 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.15 1.56 6.71 -52.49 -0.35 1.21 16 35 H 0.16 1.44 7.61 -52.49 -0.40 1.04 16 LS Contribution 311.26 15.07 4.69 4.69 Total: -1.00 -30.14 311.26 -7.41 -37.55 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -3.95 Total: 0.93 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -3.18 Total: -12.34 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.59 Total: -33.09 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.90 Total: -12.75 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.67 Total: 15.01 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.14 -7.41 -37.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286933683.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.140 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds