Wall clock time and date at job start Tue Mar 31 2020 01:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21264 * 119.99762 * 2 1 4 4 C 1.47184 * 120.00378 * 179.97438 * 2 1 3 5 5 C 1.39769 * 120.13675 * 256.16926 * 4 2 1 6 6 C 1.38576 * 119.74321 * 179.97438 * 5 4 2 7 7 N 1.39714 * 119.98792 * 180.02562 * 6 5 4 8 8 C 1.46501 * 119.99734 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46880 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47093 * 180.02562 * 9 8 7 11 11 H 1.08005 * 120.00197 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00047 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99885 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00002 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46896 * 90.00535 * 14 12 10 16 16 H 1.48500 * 109.47096 * 210.00089 * 14 12 10 17 17 H 1.48497 * 109.47224 * 330.00612 * 14 12 10 18 18 C 1.39065 * 120.01966 * 359.74844 * 6 5 4 19 19 C 1.38252 * 120.27078 * 0.50726 * 18 6 5 20 20 C 1.37949 * 120.26064 * 359.49161 * 19 18 6 21 21 N 1.48018 * 120.01213 * 180.22955 * 20 19 18 22 22 O 1.21798 * 120.00056 * 5.85664 * 21 20 19 23 23 O 1.21802 * 120.00061 * 185.85322 * 21 20 19 24 24 H 1.08997 * 109.47446 * 269.99791 * 1 2 3 25 25 H 1.09000 * 109.47182 * 30.00083 * 1 2 3 26 26 H 1.09004 * 109.46743 * 149.99792 * 1 2 3 27 27 H 1.07995 * 120.13059 * 359.95463 * 5 4 2 28 28 H 0.97006 * 120.00213 * 0.02562 * 7 6 5 29 29 H 1.08998 * 109.47064 * 299.99645 * 8 7 6 30 30 H 1.08997 * 109.46938 * 59.99758 * 8 7 6 31 31 H 1.09005 * 109.47317 * 300.00099 * 9 8 7 32 32 H 1.09005 * 109.47246 * 60.00381 * 9 8 7 33 33 H 0.96998 * 120.00046 * 180.02562 * 13 12 10 34 34 H 1.07993 * 119.86430 * 180.27424 * 18 6 5 35 35 H 1.07999 * 119.86547 * 179.76492 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 2.8441 -1.7373 1.1745 6 6 3.5347 -2.9387 1.1659 7 7 4.1371 -3.4063 2.3366 8 6 4.8676 -4.6761 2.3276 9 6 5.4253 -4.9534 3.7251 10 6 6.1773 -6.2593 3.7157 11 1 6.2499 -6.8343 2.8043 12 6 6.7719 -6.7207 4.8710 13 7 7.4278 -7.8606 4.8630 14 14 6.6459 -5.7267 6.4476 15 1 5.4352 -6.1432 7.1999 16 1 7.8523 -5.9645 7.2804 17 1 6.5501 -4.2825 6.1159 18 6 3.6233 -3.6819 -0.0062 19 6 3.0334 -3.2224 -1.1690 20 6 2.3432 -2.0279 -1.1734 21 7 1.7095 -1.5436 -2.4203 22 8 1.7050 -2.2475 -3.4143 23 8 1.1925 -0.4413 -2.4523 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 2.7711 -1.1606 2.0846 28 1 4.0716 -2.8901 3.1553 29 1 4.1924 -5.4817 2.0391 30 1 5.6893 -4.6175 1.6139 31 1 6.1006 -4.1478 4.0133 32 1 4.6038 -5.0119 4.4392 33 1 7.8458 -8.1854 5.6758 34 1 4.1583 -4.6200 -0.0089 35 1 3.1095 -3.8030 -2.0765 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286933683.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:17 Heat of formation + Delta-G solvation = -38.422058 kcal Electronic energy + Delta-G solvation = -20604.155797 eV Core-core repulsion = 17183.612345 eV Total energy + Delta-G solvation = -3420.543453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.28066 -41.21878 -39.98414 -37.64175 -37.41338 -35.14223 -33.08031 -33.03654 -30.87984 -30.62201 -27.56418 -26.02664 -25.09264 -23.41538 -22.58787 -21.36924 -20.03889 -19.63372 -19.09570 -18.59705 -18.39455 -17.29902 -16.76848 -16.38216 -16.17006 -16.01784 -15.90914 -15.43249 -14.98600 -14.65697 -14.40789 -14.33226 -13.52252 -13.37067 -13.16777 -13.12963 -12.78062 -12.65351 -12.40851 -12.27625 -12.24411 -12.07598 -11.84116 -11.50098 -11.42097 -11.07428 -10.79414 -10.45815 -8.91595 -8.31638 -6.37884 -1.17674 -0.21046 0.36556 0.43799 0.67830 1.37075 1.39286 1.48730 2.10005 2.23158 2.33870 2.69042 3.04668 3.33473 3.67854 3.77311 3.85128 4.03447 4.21371 4.37699 4.42338 4.42439 4.52279 4.57765 4.70826 4.75936 4.85342 5.03243 5.07700 5.18684 5.37614 5.38643 5.55265 5.91920 6.16342 6.18347 6.49189 6.54198 6.72394 7.27498 8.84340 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031288 B = 0.003378 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.691583 B = 8287.500811 C = 9015.440447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.411 3.589 3 O -0.474 6.474 4 C -0.047 4.047 5 C -0.162 4.162 6 C 0.277 3.723 7 N -0.707 5.707 8 C 0.135 3.865 9 C -0.020 4.020 10 C -0.533 4.533 11 H 0.041 0.959 12 C 0.007 3.993 13 N -0.948 5.948 14 Si 0.949 3.051 15 H -0.267 1.267 16 H -0.291 1.291 17 H -0.241 1.241 18 C -0.190 4.190 19 C 0.007 3.993 20 C -0.113 4.113 21 N 0.045 4.955 22 O -0.178 6.178 23 O -0.207 6.207 24 H 0.128 0.872 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.168 0.832 28 H 0.415 0.585 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.030 0.970 32 H 0.032 0.968 33 H 0.267 0.733 34 H 0.161 0.839 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.298 12.449 -6.168 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.287 3.713 3 O -0.348 6.348 4 C -0.051 4.051 5 C -0.186 4.186 6 C 0.164 3.836 7 N -0.329 5.329 8 C 0.012 3.988 9 C -0.057 4.057 10 C -0.571 4.571 11 H 0.060 0.940 12 C -0.191 4.191 13 N -0.588 5.588 14 Si 0.773 3.227 15 H -0.193 1.193 16 H -0.218 1.218 17 H -0.164 1.164 18 C -0.213 4.213 19 C -0.013 4.013 20 C -0.201 4.201 21 N 0.554 4.446 22 O -0.391 6.391 23 O -0.411 6.411 24 H 0.146 0.854 25 H 0.119 0.881 26 H 0.101 0.899 27 H 0.186 0.814 28 H 0.253 0.747 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.178 0.822 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -12.482 12.507 -5.459 18.494 hybrid contribution 0.267 -0.015 0.525 0.589 sum -12.216 12.492 -4.934 18.155 Atomic orbital electron populations 1.22205 0.89536 1.05803 1.06276 1.22945 0.93672 0.86154 0.68485 1.90591 1.73004 1.34328 1.36925 1.20210 0.96698 0.95928 0.92264 1.20719 1.02531 0.97205 0.98096 1.18192 0.87112 0.90825 0.87495 1.45358 1.54200 1.23885 1.09497 1.21422 0.94908 0.83513 0.98956 1.19663 0.96329 0.95741 0.93999 1.21245 1.33375 1.05707 0.96818 0.94043 1.25971 0.94256 0.95832 1.03025 1.70050 1.36609 1.22342 1.29834 0.85681 0.77783 0.80611 0.78654 1.19260 1.21771 1.16399 1.21010 1.06657 1.03339 0.90314 1.20843 0.89339 0.90809 1.00294 1.20797 1.13987 1.01625 0.83676 1.43691 0.98314 0.99793 1.02845 1.94496 1.63911 1.55228 1.25506 1.94497 1.48036 1.07870 1.90668 0.85378 0.88084 0.89940 0.81445 0.74747 0.91247 0.91669 0.95168 0.95018 0.92451 0.82162 0.81206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 9.15 71.24 0.65 -2.17 16 2 C 0.41 9.40 4.55 28.04 0.13 9.53 16 3 O -0.47 -14.03 17.86 -2.98 -0.05 -14.09 16 4 C -0.05 -1.05 5.53 -20.17 -0.11 -1.16 16 5 C -0.16 -3.04 9.64 22.72 0.22 -2.83 16 6 C 0.28 5.55 6.65 38.16 0.25 5.80 16 7 N -0.71 -15.05 5.73 -339.54 -1.95 -17.00 16 8 C 0.14 3.83 4.85 86.38 0.42 4.25 16 9 C -0.02 -0.72 4.15 29.85 0.12 -0.60 16 10 C -0.53 -26.79 9.66 25.60 0.25 -26.54 16 11 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 12 C 0.01 0.36 5.47 84.65 0.46 0.82 16 13 N -0.95 -55.51 13.96 21.45 0.30 -55.21 16 14 Si 0.95 39.59 27.47 68.60 1.88 41.47 16 15 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 16 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.24 -8.93 6.54 99.48 0.65 -8.28 16 18 C -0.19 -3.73 9.31 22.47 0.21 -3.52 16 19 C 0.01 0.15 9.54 22.20 0.21 0.36 16 20 C -0.11 -2.70 6.88 36.70 0.25 -2.44 16 21 N 0.05 1.25 4.45 -45.70 -0.20 1.05 16 22 O -0.18 -5.03 18.46 18.89 0.35 -4.69 16 23 O -0.21 -6.07 15.30 18.89 0.29 -5.78 16 24 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.26 7.81 -2.38 -0.02 1.24 16 27 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 28 H 0.42 7.44 8.48 -92.70 -0.79 6.65 16 29 H 0.07 1.96 7.93 -2.39 -0.02 1.94 16 30 H 0.07 1.89 7.95 -2.39 -0.02 1.87 16 31 H 0.03 1.10 7.20 -2.38 -0.02 1.08 16 32 H 0.03 1.12 7.57 -2.38 -0.02 1.10 16 33 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 34 H 0.16 2.91 6.71 -2.91 -0.02 2.89 16 35 H 0.17 2.83 7.61 -2.91 -0.02 2.81 16 Total: -1.00 -65.95 311.26 3.97 -61.98 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.29 Total: 10.76 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 3.07 Total: -18.50 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -1.85 Total: -71.16 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: 0.58 Total: -24.55 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 1.88 Total: 41.47 kcal Total: -65.95 3.97 -61.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286933683.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.557 kcal (2) G-P(sol) polarization free energy of solvation -65.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds