Wall clock time and date at job start Tue Mar 31 2020 01:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21312 * 120.00179 * 2 1 4 4 C 1.46654 * 119.99772 * 179.97438 * 2 1 3 5 5 C 1.40061 * 120.24067 * 5.62682 * 4 2 1 6 6 C 1.37623 * 119.89876 * 179.97438 * 5 4 2 7 7 N 1.48022 * 119.80177 * 180.02562 * 6 5 4 8 8 O 1.21798 * 120.00202 * 359.97438 * 7 6 5 9 9 O 1.21795 * 119.99953 * 180.02562 * 7 6 5 10 10 C 1.38702 * 120.39393 * 359.97438 * 6 5 4 11 11 C 1.37934 * 120.49087 * 359.74975 * 10 6 5 12 12 C 1.38963 * 120.09065 * 0.51151 * 11 10 6 13 13 N 1.38695 * 120.19893 * 179.76858 * 12 11 10 14 14 C 1.46508 * 119.99713 * 354.22766 * 13 12 11 15 15 C 1.53002 * 109.46676 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46770 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00239 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00067 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99518 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00227 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47255 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47199 * 119.99697 * 20 18 16 23 23 H 1.48498 * 109.47505 * 240.00107 * 20 18 16 24 24 H 1.08997 * 109.47797 * 270.00379 * 1 2 3 25 25 H 1.09008 * 109.46999 * 30.00570 * 1 2 3 26 26 H 1.09004 * 109.47171 * 149.99991 * 1 2 3 27 27 H 1.07998 * 120.05132 * 359.94792 * 5 4 2 28 28 H 1.07997 * 119.75387 * 180.02562 * 10 6 5 29 29 H 1.08004 * 119.95519 * 180.25212 * 11 10 6 30 30 H 0.97001 * 120.00114 * 174.22690 * 13 12 11 31 31 H 1.08998 * 109.47098 * 60.00033 * 14 13 12 32 32 H 1.08999 * 109.46717 * 299.99848 * 14 13 12 33 33 H 1.09004 * 109.46609 * 299.99598 * 15 14 13 34 34 H 1.08998 * 109.47496 * 60.00073 * 15 14 13 35 35 H 0.97008 * 119.99509 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2402 -1.2701 0.0006 5 6 1.5500 -2.4831 -0.1175 6 6 2.2452 -3.6708 -0.1167 7 7 1.5137 -4.9515 -0.2422 8 8 0.3000 -4.9521 -0.3453 9 8 2.1252 -6.0048 -0.2415 10 6 3.6273 -3.6749 -0.0001 11 6 4.3238 -2.4896 0.1114 12 6 3.6418 -1.2788 0.1184 13 7 4.3395 -0.0858 0.2352 14 6 5.7842 -0.1029 0.4786 15 6 6.3036 1.3336 0.5659 16 6 7.7896 1.3160 0.8156 17 1 8.3113 0.3744 0.9037 18 6 8.4831 2.5019 0.9327 19 7 7.8477 3.6484 0.8260 20 14 10.3249 2.4802 1.2430 21 1 10.7970 1.0744 1.3228 22 1 11.0225 3.1746 0.1310 23 1 10.6197 3.1741 2.5223 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5140 26 1 -0.3634 -0.8900 -0.5138 27 1 0.4739 -2.4864 -0.2087 28 1 4.1625 -4.6130 -0.0010 29 1 5.4003 -2.5027 0.1977 30 1 3.8710 0.7598 0.1558 31 1 6.2843 -0.6215 -0.3394 32 1 5.9885 -0.6205 1.4159 33 1 6.0991 1.8514 -0.3712 34 1 5.8034 1.8517 1.3841 35 1 8.3356 4.4828 0.9080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286947305.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:01 Heat of formation + Delta-G solvation = -23.316174 kcal Electronic energy + Delta-G solvation = -20659.743424 eV Core-core repulsion = 17239.855012 eV Total energy + Delta-G solvation = -3419.888412 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.06301 -40.59708 -38.46779 -36.46577 -36.32037 -33.39118 -32.48717 -31.24406 -29.94607 -28.83618 -26.00867 -24.63429 -24.32785 -22.07505 -21.33445 -20.30257 -18.86309 -18.53819 -17.61689 -17.42201 -16.61320 -16.10107 -15.89516 -15.37452 -14.75187 -14.71342 -14.52445 -14.34831 -13.88275 -13.36531 -13.13789 -12.48536 -12.40697 -12.38826 -12.09398 -11.48391 -11.46347 -11.43072 -11.08968 -11.08267 -10.94902 -10.75916 -10.12581 -9.92190 -9.81734 -9.59689 -9.45937 -8.59441 -7.84794 -6.23323 -4.28873 0.06005 0.35538 1.48033 1.54797 2.10439 3.18214 3.25146 3.28235 3.32707 3.38168 3.75334 4.23534 4.28611 4.47130 4.70365 4.78207 4.93933 5.09401 5.13644 5.15951 5.28771 5.48375 5.56837 5.68665 5.76842 5.83624 5.86761 6.06867 6.35995 6.49494 6.97858 7.19080 7.37199 7.38185 7.71617 7.75829 7.80053 8.08301 8.76577 9.37160 10.87990 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023327 B = 0.003743 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.059485 B = 7478.778649 C = 8647.899972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.406 3.594 3 O -0.464 6.464 4 C -0.274 4.274 5 C 0.051 3.949 6 C -0.138 4.138 7 N 0.048 4.952 8 O -0.187 6.187 9 O -0.182 6.182 10 C 0.018 3.982 11 C -0.206 4.206 12 C 0.318 3.682 13 N -0.678 5.678 14 C 0.101 3.899 15 C 0.013 3.987 16 C -0.528 4.528 17 H 0.061 0.939 18 C 0.061 3.939 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.422 0.578 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.697 -10.709 -1.607 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.287 3.713 3 O -0.340 6.340 4 C -0.282 4.282 5 C 0.030 3.970 6 C -0.225 4.225 7 N 0.561 4.439 8 O -0.398 6.398 9 O -0.394 6.394 10 C -0.003 4.003 11 C -0.229 4.229 12 C 0.194 3.806 13 N -0.303 5.303 14 C -0.022 4.022 15 C -0.025 4.025 16 C -0.567 4.567 17 H 0.079 0.921 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.119 0.881 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.174 0.826 28 H 0.170 0.830 29 H 0.171 0.829 30 H 0.271 0.729 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.787 -9.218 -1.504 15.039 hybrid contribution 0.669 -0.076 0.121 0.684 sum -11.118 -9.295 -1.383 14.557 Atomic orbital electron populations 1.22211 0.93066 1.05153 1.05094 1.22105 0.91933 0.86629 0.70609 1.90311 1.70760 1.34182 1.38787 1.19734 0.92212 0.94738 1.21484 1.20966 1.00959 0.88740 0.86286 1.20500 0.92740 0.83180 1.26129 1.43461 1.00921 1.02784 0.96764 1.94491 0.96367 1.94250 1.54670 1.94508 1.69578 1.20192 1.55126 1.20839 0.90729 0.99913 0.88861 1.20789 1.01359 0.89382 1.11397 1.18519 0.89910 0.88238 0.83903 1.46708 1.10631 1.07036 1.65951 1.22212 0.76347 1.03466 1.00127 1.19306 0.96658 0.88096 0.98392 1.20992 0.92103 0.92858 1.50733 0.92107 1.25017 0.98938 0.95426 0.94839 1.69972 1.36161 0.97432 1.49129 0.86426 0.84684 0.78285 0.77980 1.19564 1.20808 1.20819 0.88131 0.88981 0.89450 0.82628 0.83038 0.82946 0.72875 0.91674 0.91674 0.95635 0.95644 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.50 9.86 36.01 0.36 -1.14 16 2 C 0.41 4.84 7.20 -30.91 -0.22 4.62 16 3 O -0.46 -7.24 14.39 5.53 0.08 -7.16 16 4 C -0.27 -3.32 5.88 -104.90 -0.62 -3.94 16 5 C 0.05 0.54 8.89 -39.12 -0.35 0.19 16 6 C -0.14 -1.67 6.84 -80.00 -0.55 -2.22 16 7 N 0.05 0.67 4.45 33.94 0.15 0.82 16 8 O -0.19 -2.62 18.42 -29.46 -0.54 -3.17 16 9 O -0.18 -2.64 18.43 -29.46 -0.54 -3.18 16 10 C 0.02 0.20 9.54 -39.52 -0.38 -0.18 16 11 C -0.21 -2.48 9.30 -39.42 -0.37 -2.85 16 12 C 0.32 4.38 6.66 -83.58 -0.56 3.83 16 13 N -0.68 -11.06 5.58 -58.40 -0.33 -11.39 16 14 C 0.10 1.81 4.88 -4.04 -0.02 1.79 16 15 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 16 C -0.53 -13.76 9.11 -34.44 -0.31 -14.08 16 17 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 20 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.09 0.48 6.28 -51.93 -0.33 0.16 16 27 H 0.16 1.28 5.78 -52.49 -0.30 0.97 16 28 H 0.15 1.44 7.59 -52.49 -0.40 1.04 16 29 H 0.15 1.69 6.72 -52.48 -0.35 1.34 16 30 H 0.42 7.45 4.99 -40.94 -0.20 7.25 16 31 H 0.07 1.11 7.72 -51.93 -0.40 0.71 16 32 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 LS Contribution 309.95 15.07 4.67 4.67 Total: -1.00 -29.91 309.95 -7.69 -37.60 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -3.64 Total: 3.33 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -3.25 Total: -12.26 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.56 Total: -35.25 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -1.01 Total: -13.52 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.91 -7.69 -37.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286947305.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.285 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds