Wall clock time and date at job start Tue Mar 31 2020 01:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21312 * 120.00179 * 2 1 4 4 C 1.46654 * 119.99772 * 179.97438 * 2 1 3 5 5 C 1.40061 * 120.24067 * 5.62682 * 4 2 1 6 6 C 1.37623 * 119.89876 * 179.97438 * 5 4 2 7 7 N 1.48022 * 119.80177 * 180.02562 * 6 5 4 8 8 O 1.21798 * 120.00202 * 359.97438 * 7 6 5 9 9 O 1.21795 * 119.99953 * 180.02562 * 7 6 5 10 10 C 1.38702 * 120.39393 * 359.97438 * 6 5 4 11 11 C 1.37934 * 120.49087 * 359.74975 * 10 6 5 12 12 C 1.38963 * 120.09065 * 0.51151 * 11 10 6 13 13 N 1.38695 * 120.19893 * 179.76858 * 12 11 10 14 14 C 1.46508 * 119.99713 * 354.22766 * 13 12 11 15 15 C 1.53002 * 109.46676 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46770 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00239 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00067 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99518 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00227 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47255 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47199 * 119.99697 * 20 18 16 23 23 H 1.48498 * 109.47505 * 240.00107 * 20 18 16 24 24 H 1.08997 * 109.47797 * 270.00379 * 1 2 3 25 25 H 1.09008 * 109.46999 * 30.00570 * 1 2 3 26 26 H 1.09004 * 109.47171 * 149.99991 * 1 2 3 27 27 H 1.07998 * 120.05132 * 359.94792 * 5 4 2 28 28 H 1.07997 * 119.75387 * 180.02562 * 10 6 5 29 29 H 1.08004 * 119.95519 * 180.25212 * 11 10 6 30 30 H 0.97001 * 120.00114 * 174.22690 * 13 12 11 31 31 H 1.08998 * 109.47098 * 60.00033 * 14 13 12 32 32 H 1.08999 * 109.46717 * 299.99848 * 14 13 12 33 33 H 1.09004 * 109.46609 * 299.99598 * 15 14 13 34 34 H 1.08998 * 109.47496 * 60.00073 * 15 14 13 35 35 H 0.97008 * 119.99509 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2402 -1.2701 0.0006 5 6 1.5500 -2.4831 -0.1175 6 6 2.2452 -3.6708 -0.1167 7 7 1.5137 -4.9515 -0.2422 8 8 0.3000 -4.9521 -0.3453 9 8 2.1252 -6.0048 -0.2415 10 6 3.6273 -3.6749 -0.0001 11 6 4.3238 -2.4896 0.1114 12 6 3.6418 -1.2788 0.1184 13 7 4.3395 -0.0858 0.2352 14 6 5.7842 -0.1029 0.4786 15 6 6.3036 1.3336 0.5659 16 6 7.7896 1.3160 0.8156 17 1 8.3113 0.3744 0.9037 18 6 8.4831 2.5019 0.9327 19 7 7.8477 3.6484 0.8260 20 14 10.3249 2.4802 1.2430 21 1 10.7970 1.0744 1.3228 22 1 11.0225 3.1746 0.1310 23 1 10.6197 3.1741 2.5223 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5140 26 1 -0.3634 -0.8900 -0.5138 27 1 0.4739 -2.4864 -0.2087 28 1 4.1625 -4.6130 -0.0010 29 1 5.4003 -2.5027 0.1977 30 1 3.8710 0.7598 0.1558 31 1 6.2843 -0.6215 -0.3394 32 1 5.9885 -0.6205 1.4159 33 1 6.0991 1.8514 -0.3712 34 1 5.8034 1.8517 1.3841 35 1 8.3356 4.4828 0.9080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286947305.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:01 Heat of formation + Delta-G solvation = -40.284622 kcal Electronic energy + Delta-G solvation = -20660.479231 eV Core-core repulsion = 17239.855012 eV Total energy + Delta-G solvation = -3420.624219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.10694 -41.61011 -39.48824 -37.60573 -37.51820 -35.24019 -33.42375 -32.69995 -30.95858 -30.01570 -27.36071 -26.03315 -25.37175 -23.46733 -22.56636 -21.37558 -19.86018 -19.59718 -18.98257 -18.46533 -18.14923 -17.36661 -16.87006 -16.51931 -16.39830 -15.88498 -15.70460 -15.41949 -14.98948 -14.52613 -14.25618 -14.13400 -13.39320 -13.11977 -13.11000 -13.09315 -12.91988 -12.59123 -12.55585 -12.50154 -12.17303 -12.16763 -11.69105 -11.51887 -11.42618 -10.84318 -10.65178 -10.51872 -8.99623 -8.28550 -6.41133 -0.98908 -0.56946 0.44831 0.52456 1.18056 1.39929 1.40783 1.53501 2.13646 2.37180 2.40822 2.89378 3.07059 3.33725 3.60859 3.74227 3.83666 4.13888 4.23827 4.32483 4.36363 4.40086 4.61557 4.67230 4.69771 4.75120 4.82083 5.09151 5.15183 5.29739 5.44710 5.46083 5.66109 5.91685 6.05166 6.22731 6.61520 6.66189 6.75382 7.29878 8.84099 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023327 B = 0.003743 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.059485 B = 7478.778649 C = 8647.899972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.403 3.597 3 O -0.508 6.508 4 C -0.276 4.276 5 C 0.066 3.934 6 C -0.142 4.142 7 N 0.049 4.951 8 O -0.185 6.185 9 O -0.202 6.202 10 C 0.027 3.973 11 C -0.208 4.208 12 C 0.302 3.698 13 N -0.696 5.696 14 C 0.122 3.878 15 C 0.018 3.982 16 C -0.541 4.541 17 H 0.074 0.926 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.970 3.030 21 H -0.256 1.256 22 H -0.280 1.280 23 H -0.281 1.281 24 H 0.120 0.880 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.186 0.814 28 H 0.171 0.829 29 H 0.162 0.838 30 H 0.414 0.586 31 H 0.076 0.924 32 H 0.075 0.925 33 H -0.004 1.004 34 H -0.005 1.005 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.208 -12.688 -1.555 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.287 3.713 3 O -0.388 6.388 4 C -0.284 4.284 5 C 0.046 3.954 6 C -0.230 4.230 7 N 0.559 4.441 8 O -0.397 6.397 9 O -0.410 6.410 10 C 0.006 3.994 11 C -0.230 4.230 12 C 0.182 3.818 13 N -0.324 5.324 14 C -0.001 4.001 15 C -0.020 4.020 16 C -0.580 4.580 17 H 0.092 0.908 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.795 3.205 21 H -0.179 1.179 22 H -0.206 1.206 23 H -0.207 1.207 24 H 0.138 0.862 25 H 0.114 0.886 26 H 0.132 0.868 27 H 0.203 0.797 28 H 0.188 0.812 29 H 0.180 0.820 30 H 0.262 0.738 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.014 0.986 34 H 0.014 0.986 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.308 -11.289 -1.457 16.764 hybrid contribution 0.682 0.477 0.086 0.837 sum -11.625 -10.811 -1.370 15.934 Atomic orbital electron populations 1.22279 0.89295 1.06678 1.06680 1.22803 0.93956 0.85701 0.68799 1.90312 1.71930 1.35549 1.40969 1.19905 0.91677 0.95610 1.21176 1.21181 1.02284 0.87419 0.84470 1.20690 0.93133 0.82892 1.26238 1.43629 1.00924 1.03075 0.96497 1.94480 0.96598 1.94350 1.54275 1.94516 1.69591 1.20750 1.56118 1.21031 0.90584 1.00335 0.87408 1.20891 1.01900 0.88908 1.11344 1.18837 0.90806 0.87785 0.84348 1.46457 1.09713 1.07740 1.68506 1.21756 0.77766 0.99473 1.01119 1.19123 0.95983 0.91301 0.95570 1.21500 0.93383 0.93387 1.49706 0.90765 1.26003 1.03996 0.95095 0.94670 1.70116 1.38190 0.98193 1.50690 0.85313 0.78644 0.78952 0.77627 1.17909 1.20630 1.20654 0.86228 0.88598 0.86798 0.79677 0.81175 0.82044 0.73830 0.90541 0.90732 0.98570 0.98626 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 9.86 71.24 0.70 -1.68 16 2 C 0.40 9.21 7.20 27.89 0.20 9.41 16 3 O -0.51 -16.27 14.39 -3.13 -0.05 -16.32 16 4 C -0.28 -6.25 5.88 -20.05 -0.12 -6.37 16 5 C 0.07 1.21 8.89 22.57 0.20 1.41 16 6 C -0.14 -3.04 6.84 36.34 0.25 -2.80 16 7 N 0.05 1.20 4.45 -46.54 -0.21 1.00 16 8 O -0.18 -4.64 18.42 18.89 0.35 -4.29 16 9 O -0.20 -5.45 18.43 18.89 0.35 -5.10 16 10 C 0.03 0.54 9.54 22.31 0.21 0.75 16 11 C -0.21 -4.63 9.30 22.37 0.21 -4.42 16 12 C 0.30 8.09 6.66 38.82 0.26 8.35 16 13 N -0.70 -23.19 5.58 -338.67 -1.89 -25.08 16 14 C 0.12 4.43 4.88 86.38 0.42 4.85 16 15 C 0.02 0.87 5.09 29.85 0.15 1.02 16 16 C -0.54 -28.55 9.11 25.60 0.23 -28.31 16 17 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 18 C 0.00 0.05 5.46 84.66 0.46 0.51 16 19 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 20 Si 0.97 42.02 29.54 68.60 2.03 44.05 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 24 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.11 0.79 6.28 -2.39 -0.01 0.77 16 27 H 0.19 2.24 5.78 -2.91 -0.02 2.22 16 28 H 0.17 2.75 7.59 -2.91 -0.02 2.73 16 29 H 0.16 3.28 6.72 -2.91 -0.02 3.26 16 30 H 0.41 15.36 4.99 -94.62 -0.47 14.89 16 31 H 0.08 2.56 7.72 -2.39 -0.02 2.55 16 32 H 0.07 2.53 8.13 -2.39 -0.02 2.51 16 33 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 Total: -1.00 -66.44 309.95 4.71 -61.73 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.67 Total: 15.98 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 3.18 Total: -17.27 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -1.81 Total: -78.77 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: 0.65 Total: -25.71 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -66.44 4.71 -61.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286947305.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.441 kcal (2) G-P(sol) polarization free energy of solvation -66.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds