Wall clock time and date at job start Tue Mar 31 2020 00:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 120.00194 * 2 1 4 4 N 1.46507 * 109.47199 * 124.99399 * 3 2 1 5 5 C 1.46503 * 119.99619 * 94.29402 * 4 3 2 6 6 C 1.50697 * 109.47078 * 90.73489 * 5 4 3 7 7 H 1.08005 * 120.00325 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00119 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99772 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00177 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47287 * 89.99900 * 10 8 6 12 12 H 1.48501 * 109.47207 * 210.00012 * 10 8 6 13 13 H 1.48497 * 109.47207 * 330.00247 * 10 8 6 14 14 C 1.34773 * 120.00347 * 274.29704 * 4 3 2 15 15 O 1.21607 * 119.99776 * 6.15832 * 14 4 3 16 16 C 1.47484 * 120.00156 * 186.16366 * 14 4 3 17 17 C 1.37801 * 126.77521 * 7.84263 * 16 14 4 18 18 O 1.33498 * 108.34635 * 179.87204 * 17 16 14 19 19 C 1.34895 * 109.88450 * 0.40467 * 18 17 16 20 20 C 1.46768 * 125.65386 * 179.74392 * 19 18 17 21 21 N 1.34775 * 120.00134 * 0.02562 * 20 19 18 22 22 O 1.21680 * 120.00133 * 180.02562 * 20 19 18 23 23 C 1.36055 * 108.68698 * 359.75215 * 19 18 17 24 24 H 1.08000 * 120.00010 * 185.05863 * 1 2 3 25 25 H 1.07994 * 119.99756 * 5.06463 * 1 2 3 26 26 H 1.08006 * 119.99881 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47067 * 4.99784 * 3 2 1 28 28 H 1.09005 * 109.47339 * 244.99396 * 3 2 1 29 29 H 1.09007 * 109.46729 * 210.73326 * 5 4 3 30 30 H 1.09000 * 109.47508 * 330.73584 * 5 4 3 31 31 H 0.96998 * 119.99613 * 179.97438 * 9 8 6 32 32 H 1.08003 * 125.82830 * 359.97438 * 17 16 14 33 33 H 0.96995 * 120.00357 * 359.97438 * 21 20 19 34 34 H 0.97002 * 120.00074 * 179.97438 * 21 20 19 35 35 H 1.08003 * 126.68319 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3319 1.1316 5 6 4.3854 0.9136 0.9457 6 6 5.2238 2.1093 0.5737 7 1 4.7660 3.0835 0.4850 8 6 6.5757 1.9599 0.3476 9 7 7.1334 0.7739 0.4561 10 14 7.6151 3.4422 -0.1128 11 1 8.1441 4.0782 1.1205 12 1 8.7470 3.0062 -0.9695 13 1 6.7806 4.4206 -0.8554 14 6 2.5692 1.7412 2.3434 15 8 1.3911 1.9811 2.5258 16 6 3.5334 1.8983 3.4483 17 6 4.9062 1.8132 3.3636 18 8 5.4157 2.0170 4.5805 19 6 4.4196 2.2250 5.4661 20 6 4.5902 2.4787 6.9015 21 7 5.8265 2.5190 7.4365 22 8 3.6154 2.6527 7.6087 23 6 3.2306 2.1603 4.8078 24 1 -0.5400 -0.9317 0.0825 25 1 -0.5399 0.9316 -0.0826 26 1 1.8500 -0.9354 -0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6214 1.4025 -0.9314 29 1 4.7614 0.4804 1.8726 30 1 4.4385 0.1709 0.1497 31 1 8.0844 0.6687 0.2966 32 1 5.4732 1.6169 2.4656 33 1 6.6036 2.3800 6.8730 34 1 5.9393 2.6871 8.3852 35 1 2.2476 2.2849 5.2376 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292191106.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:17 Heat of formation + Delta-G solvation = -25.130487 kcal Electronic energy + Delta-G solvation = -21540.895141 eV Core-core repulsion = 18120.928054 eV Total energy + Delta-G solvation = -3419.967087 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.30741 -39.15142 -38.83202 -35.57153 -34.10339 -33.67563 -32.62620 -32.18336 -29.64915 -27.75695 -25.98522 -23.49899 -23.29241 -22.10668 -20.37197 -19.67026 -19.02408 -17.76364 -16.89915 -16.75310 -16.27232 -15.96493 -15.53079 -15.32271 -14.66522 -14.41540 -14.20687 -13.94382 -13.78004 -12.87690 -12.83246 -12.73276 -12.59418 -12.38268 -11.57227 -11.25993 -11.14411 -10.90775 -10.67780 -10.40705 -10.25970 -10.02883 -9.78240 -9.55315 -9.43450 -8.99996 -8.87807 -8.21479 -7.90760 -6.52550 -4.64530 1.40834 2.16364 2.55795 3.03524 3.09466 3.15019 3.18755 3.31841 3.62163 3.95703 4.03541 4.12429 4.77750 5.12903 5.13210 5.33155 5.49190 5.57599 5.76880 5.93351 6.02914 6.14046 6.29857 6.43454 6.51652 6.63840 6.75257 6.87698 6.92448 7.07770 7.10174 7.34262 7.43939 7.47206 7.66739 8.16249 8.19266 8.50534 8.91663 9.05640 10.49758 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.007752 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.416099 B = 3610.879284 C = 5719.396112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.150 3.850 4 N -0.590 5.590 5 C 0.215 3.785 6 C -0.555 4.555 7 H 0.072 0.928 8 C 0.066 3.934 9 N -0.879 5.879 10 Si 0.899 3.101 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.269 1.269 14 C 0.589 3.411 15 O -0.563 6.563 16 C -0.262 4.262 17 C 0.069 3.931 18 O -0.164 6.164 19 C -0.131 4.131 20 C 0.616 3.384 21 N -0.848 5.848 22 O -0.534 6.534 23 C -0.056 4.056 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.274 0.726 32 H 0.282 0.718 33 H 0.408 0.592 34 H 0.405 0.595 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.017 -0.185 3.985 3.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.181 4.181 3 C 0.027 3.973 4 N -0.320 5.320 5 C 0.095 3.905 6 C -0.593 4.593 7 H 0.090 0.910 8 C -0.140 4.140 9 N -0.515 5.515 10 Si 0.725 3.275 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.194 1.194 14 C 0.379 3.621 15 O -0.445 6.445 16 C -0.267 4.267 17 C -0.003 4.003 18 O -0.058 6.058 19 C -0.182 4.182 20 C 0.403 3.597 21 N -0.411 5.411 22 O -0.412 6.412 23 C -0.077 4.077 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.124 0.876 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.296 0.704 33 H 0.237 0.763 34 H 0.236 0.764 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.848 -0.073 4.460 4.540 hybrid contribution 1.034 0.628 -0.349 1.260 sum 0.186 0.555 4.111 4.152 Atomic orbital electron populations 1.23711 0.95859 1.01394 1.01140 1.23365 0.96186 0.99242 0.99336 1.20368 0.92202 0.94878 0.89838 1.47928 1.12552 1.63800 1.07713 1.19971 0.75753 0.96063 0.98711 1.21646 0.93101 0.95551 1.49037 0.91026 1.25087 0.97947 0.96679 0.94265 1.69926 1.12990 1.21977 1.46583 0.86437 0.79767 0.82174 0.79096 1.19936 1.20651 1.19378 1.17199 0.86499 0.76620 0.81812 1.90690 1.17310 1.53293 1.83168 1.20634 0.94153 1.16906 0.94960 1.28857 0.95206 0.90178 0.86034 1.84031 1.36070 1.67883 1.17848 1.21569 0.87289 1.18517 0.90816 1.16538 0.83539 0.75660 0.84012 1.43666 1.08111 1.75535 1.13739 1.90887 1.39293 1.50989 1.60050 1.21784 0.98442 0.95792 0.91695 0.88989 0.88694 0.87587 0.90663 0.89350 0.93707 0.93576 0.91658 0.70392 0.76310 0.76416 0.82119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 14.31 29.01 0.42 -2.28 16 2 C -0.16 -2.64 9.81 -36.03 -0.35 -2.99 16 3 C 0.15 2.69 5.76 -5.19 -0.03 2.66 16 4 N -0.59 -12.11 2.45 -177.68 -0.44 -12.54 16 5 C 0.21 4.61 4.63 -5.19 -0.02 4.59 16 6 C -0.56 -12.65 7.14 -34.44 -0.25 -12.90 16 7 H 0.07 1.69 7.81 -52.48 -0.41 1.28 16 8 C 0.07 1.52 4.90 -17.82 -0.09 1.43 16 9 N -0.88 -20.95 13.29 55.43 0.74 -20.21 16 10 Si 0.90 18.34 29.54 -169.99 -5.02 13.32 16 11 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 12 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 13 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 14 C 0.59 12.89 7.62 -12.49 -0.10 12.79 16 15 O -0.56 -13.30 16.67 5.27 0.09 -13.21 16 16 C -0.26 -5.41 5.97 -104.96 -0.63 -6.03 16 17 C 0.07 1.36 9.56 30.57 0.29 1.65 16 18 O -0.16 -2.93 10.33 6.16 0.06 -2.87 16 19 C -0.13 -2.32 7.09 -36.92 -0.26 -2.58 16 20 C 0.62 9.75 8.06 -12.81 -0.10 9.65 16 21 N -0.85 -9.27 8.87 30.28 0.27 -9.00 16 22 O -0.53 -9.95 17.68 5.21 0.09 -9.86 16 23 C -0.06 -1.08 10.42 -39.03 -0.41 -1.48 16 24 H 0.09 1.18 8.06 -52.49 -0.42 0.76 16 25 H 0.09 1.36 7.86 -52.49 -0.41 0.95 16 26 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 27 H 0.08 1.36 7.31 -51.93 -0.38 0.98 16 28 H 0.09 1.50 8.04 -51.93 -0.42 1.09 16 29 H 0.05 0.99 4.91 -51.93 -0.25 0.73 16 30 H 0.05 1.03 8.07 -51.93 -0.42 0.61 16 31 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 32 H 0.28 5.93 2.81 -52.48 -0.15 5.78 16 33 H 0.41 3.78 8.57 -40.82 -0.35 3.43 16 34 H 0.40 3.43 8.93 -40.82 -0.36 3.06 16 35 H 0.16 3.02 8.06 -52.48 -0.42 2.60 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -27.82 312.20 -4.59 -32.41 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -3.56 Total: 12.75 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -1.53 Total: 4.50 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.57 Total: -41.75 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: 0.24 Total: -25.94 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.02 Total: 13.32 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.82 -4.59 -32.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292191106.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.276 kcal (2) G-P(sol) polarization free energy of solvation -27.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds