Wall clock time and date at job start Tue Mar 31 2020 00:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 120.00194 * 2 1 4 4 N 1.46507 * 109.47199 * 124.99399 * 3 2 1 5 5 C 1.46503 * 119.99619 * 94.29402 * 4 3 2 6 6 C 1.50697 * 109.47078 * 90.73489 * 5 4 3 7 7 H 1.08005 * 120.00325 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00119 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99772 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00177 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47287 * 89.99900 * 10 8 6 12 12 H 1.48501 * 109.47207 * 210.00012 * 10 8 6 13 13 H 1.48497 * 109.47207 * 330.00247 * 10 8 6 14 14 C 1.34773 * 120.00347 * 274.29704 * 4 3 2 15 15 O 1.21607 * 119.99776 * 6.15832 * 14 4 3 16 16 C 1.47484 * 120.00156 * 186.16366 * 14 4 3 17 17 C 1.37801 * 126.77521 * 7.84263 * 16 14 4 18 18 O 1.33498 * 108.34635 * 179.87204 * 17 16 14 19 19 C 1.34895 * 109.88450 * 0.40467 * 18 17 16 20 20 C 1.46768 * 125.65386 * 179.74392 * 19 18 17 21 21 N 1.34775 * 120.00134 * 0.02562 * 20 19 18 22 22 O 1.21680 * 120.00133 * 180.02562 * 20 19 18 23 23 C 1.36055 * 108.68698 * 359.75215 * 19 18 17 24 24 H 1.08000 * 120.00010 * 185.05863 * 1 2 3 25 25 H 1.07994 * 119.99756 * 5.06463 * 1 2 3 26 26 H 1.08006 * 119.99881 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47067 * 4.99784 * 3 2 1 28 28 H 1.09005 * 109.47339 * 244.99396 * 3 2 1 29 29 H 1.09007 * 109.46729 * 210.73326 * 5 4 3 30 30 H 1.09000 * 109.47508 * 330.73584 * 5 4 3 31 31 H 0.96998 * 119.99613 * 179.97438 * 9 8 6 32 32 H 1.08003 * 125.82830 * 359.97438 * 17 16 14 33 33 H 0.96995 * 120.00357 * 359.97438 * 21 20 19 34 34 H 0.97002 * 120.00074 * 179.97438 * 21 20 19 35 35 H 1.08003 * 126.68319 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3319 1.1316 5 6 4.3854 0.9136 0.9457 6 6 5.2238 2.1093 0.5737 7 1 4.7660 3.0835 0.4850 8 6 6.5757 1.9599 0.3476 9 7 7.1334 0.7739 0.4561 10 14 7.6151 3.4422 -0.1128 11 1 8.1441 4.0782 1.1205 12 1 8.7470 3.0062 -0.9695 13 1 6.7806 4.4206 -0.8554 14 6 2.5692 1.7412 2.3434 15 8 1.3911 1.9811 2.5258 16 6 3.5334 1.8983 3.4483 17 6 4.9062 1.8132 3.3636 18 8 5.4157 2.0170 4.5805 19 6 4.4196 2.2250 5.4661 20 6 4.5902 2.4787 6.9015 21 7 5.8265 2.5190 7.4365 22 8 3.6154 2.6527 7.6087 23 6 3.2306 2.1603 4.8078 24 1 -0.5400 -0.9317 0.0825 25 1 -0.5399 0.9316 -0.0826 26 1 1.8500 -0.9354 -0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6214 1.4025 -0.9314 29 1 4.7614 0.4804 1.8726 30 1 4.4385 0.1709 0.1497 31 1 8.0844 0.6687 0.2966 32 1 5.4732 1.6169 2.4656 33 1 6.6036 2.3800 6.8730 34 1 5.9393 2.6871 8.3852 35 1 2.2476 2.2849 5.2376 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292191106.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:16 Heat of formation + Delta-G solvation = -44.067164 kcal Electronic energy + Delta-G solvation = -21541.716297 eV Core-core repulsion = 18120.928054 eV Total energy + Delta-G solvation = -3420.788243 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.81713 -40.69570 -40.24315 -37.23926 -35.59754 -34.89012 -34.23872 -33.67822 -31.12492 -29.46869 -27.46674 -25.23981 -24.68479 -23.66820 -21.82350 -20.99068 -20.42575 -19.17079 -18.60472 -18.02331 -17.87024 -17.44368 -17.06159 -16.83538 -16.30615 -15.94859 -15.52555 -15.31168 -15.22790 -14.49110 -14.34509 -14.25351 -14.22373 -13.94343 -13.14715 -12.86238 -12.74761 -12.34940 -12.24052 -12.04576 -11.74596 -11.66297 -11.14056 -11.09790 -10.87020 -10.68822 -10.26548 -9.74899 -9.56368 -8.29644 -6.46839 -0.03669 0.56320 1.27966 1.43445 1.49668 1.56966 1.62185 1.96000 2.24105 2.33852 2.41755 2.64615 2.99856 3.55178 3.81983 3.94102 4.05791 4.20709 4.34798 4.43244 4.58954 4.72479 4.79403 5.00566 5.02552 5.09641 5.15977 5.57002 5.60299 5.68222 5.71761 5.79003 5.88198 5.89823 6.25980 6.45581 6.71908 7.09476 7.18881 7.29733 8.72615 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.007752 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.416099 B = 3610.879284 C = 5719.396112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.183 4.183 3 C 0.146 3.854 4 N -0.588 5.588 5 C 0.226 3.774 6 C -0.559 4.559 7 H 0.060 0.940 8 C 0.038 3.962 9 N -0.900 5.900 10 Si 0.948 3.052 11 H -0.268 1.268 12 H -0.279 1.279 13 H -0.275 1.275 14 C 0.582 3.418 15 O -0.587 6.587 16 C -0.274 4.274 17 C 0.066 3.934 18 O -0.152 6.152 19 C -0.114 4.114 20 C 0.618 3.382 21 N -0.817 5.817 22 O -0.562 6.562 23 C -0.076 4.076 24 H 0.116 0.884 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.277 0.723 32 H 0.272 0.728 33 H 0.420 0.580 34 H 0.422 0.578 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.759 0.002 4.609 4.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.202 4.202 3 C 0.024 3.976 4 N -0.317 5.317 5 C 0.106 3.894 6 C -0.597 4.597 7 H 0.078 0.922 8 C -0.166 4.166 9 N -0.537 5.537 10 Si 0.774 3.226 11 H -0.193 1.193 12 H -0.204 1.204 13 H -0.200 1.200 14 C 0.372 3.628 15 O -0.471 6.471 16 C -0.279 4.279 17 C -0.006 4.006 18 O -0.045 6.045 19 C -0.165 4.165 20 C 0.403 3.597 21 N -0.381 5.381 22 O -0.443 6.443 23 C -0.097 4.097 24 H 0.134 0.866 25 H 0.116 0.884 26 H 0.127 0.873 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.287 0.713 33 H 0.251 0.749 34 H 0.256 0.744 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.021 0.107 5.083 5.085 hybrid contribution 0.788 0.561 -0.502 1.089 sum 0.766 0.668 4.581 4.693 Atomic orbital electron populations 1.23950 0.95345 1.02649 0.98362 1.23259 0.96770 0.98345 1.01873 1.20501 0.91986 0.95944 0.89148 1.47993 1.12587 1.63057 1.08070 1.19777 0.76124 0.95433 0.98086 1.21635 0.93485 0.95267 1.49286 0.92197 1.25567 0.98566 0.98405 0.94072 1.69978 1.13371 1.23166 1.47161 0.85675 0.78409 0.79692 0.78870 1.19320 1.20426 1.19955 1.17441 0.86475 0.76489 0.82383 1.90657 1.18180 1.54623 1.83614 1.20674 0.94339 1.17563 0.95295 1.28467 0.94700 0.90995 0.86461 1.84023 1.35761 1.67457 1.17268 1.21906 0.86653 1.16293 0.91619 1.16360 0.84548 0.75920 0.82920 1.43432 1.06766 1.73047 1.14831 1.90887 1.40630 1.52620 1.60189 1.21841 0.99225 0.97249 0.91410 0.86635 0.88437 0.87287 0.91105 0.88864 0.94000 0.94534 0.91380 0.71333 0.74882 0.74424 0.82148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.63 14.31 67.78 0.97 -3.66 16 2 C -0.18 -5.87 9.81 25.64 0.25 -5.62 16 3 C 0.15 5.28 5.76 85.63 0.49 5.78 16 4 N -0.59 -24.41 2.45 -834.30 -2.04 -26.45 16 5 C 0.23 9.80 4.63 85.63 0.40 10.20 16 6 C -0.56 -25.50 7.14 25.60 0.18 -25.32 16 7 H 0.06 2.85 7.81 -2.91 -0.02 2.83 16 8 C 0.04 1.72 4.90 84.66 0.41 2.14 16 9 N -0.90 -42.47 13.29 21.45 0.28 -42.18 16 10 Si 0.95 36.89 29.54 68.60 2.03 38.91 16 11 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 12 H -0.28 -10.71 7.11 99.48 0.71 -10.01 16 13 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 14 C 0.58 25.77 7.62 86.68 0.66 26.43 16 15 O -0.59 -28.06 16.67 -4.05 -0.07 -28.13 16 16 C -0.27 -11.38 5.97 -20.08 -0.12 -11.50 16 17 C 0.07 2.58 9.56 67.72 0.65 3.23 16 18 O -0.15 -5.21 10.33 -0.89 -0.01 -5.22 16 19 C -0.11 -3.88 7.09 23.99 0.17 -3.70 16 20 C 0.62 18.33 8.06 86.47 0.70 19.02 16 21 N -0.82 -15.41 8.87 -176.33 -1.56 -16.98 16 22 O -0.56 -20.17 17.68 -4.29 -0.08 -20.24 16 23 C -0.08 -2.92 10.42 22.63 0.24 -2.68 16 24 H 0.12 2.69 8.06 -2.91 -0.02 2.66 16 25 H 0.10 2.67 7.86 -2.91 -0.02 2.65 16 26 H 0.11 3.40 8.06 -2.91 -0.02 3.38 16 27 H 0.07 2.59 7.31 -2.39 -0.02 2.58 16 28 H 0.09 3.20 8.04 -2.38 -0.02 3.18 16 29 H 0.04 1.87 4.91 -2.38 -0.01 1.86 16 30 H 0.04 1.65 8.07 -2.39 -0.02 1.63 16 31 H 0.28 12.38 8.31 -92.71 -0.77 11.61 16 32 H 0.27 11.45 2.81 -2.91 -0.01 11.44 16 33 H 0.42 6.38 8.57 -92.71 -0.79 5.59 16 34 H 0.42 5.74 8.93 -92.71 -0.83 4.91 16 35 H 0.16 6.10 8.06 -2.91 -0.02 6.08 16 Total: -1.00 -58.26 312.20 3.09 -55.17 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: -0.46 Total: 30.80 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 5.00 Total: 14.32 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -3.32 Total: -85.61 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -0.15 Total: -53.59 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.91 kcal Total: -58.26 3.09 -55.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292191106.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.105 kcal (2) G-P(sol) polarization free energy of solvation -58.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds