Wall clock time and date at job start Tue Mar 31 2020 00:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 120.00134 * 2 1 4 4 N 1.46505 * 109.47509 * 124.99411 * 3 2 1 5 5 C 1.46490 * 120.00146 * 263.21421 * 4 3 2 6 6 C 1.50702 * 109.47091 * 269.99703 * 5 4 3 7 7 H 1.08002 * 120.00160 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00050 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00504 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00125 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46962 * 89.99975 * 10 8 6 12 12 H 1.48498 * 109.47559 * 209.99851 * 10 8 6 13 13 H 1.48500 * 109.47025 * 330.00327 * 10 8 6 14 14 C 1.34781 * 119.99448 * 83.21021 * 4 3 2 15 15 O 1.21605 * 119.99692 * 183.84266 * 14 4 3 16 16 C 1.47293 * 120.00257 * 3.84776 * 14 4 3 17 17 C 1.36560 * 125.80896 * 173.42655 * 16 14 4 18 18 C 1.40058 * 106.93223 * 180.02562 * 17 16 14 19 19 C 1.36568 * 106.92430 * 359.97438 * 18 17 16 20 20 C 1.47288 * 125.80898 * 180.02562 * 19 18 17 21 21 N 1.34779 * 120.00396 * 180.02562 * 20 19 18 22 22 O 1.21609 * 119.99926 * 0.02562 * 20 19 18 23 23 O 1.34552 * 108.38632 * 0.26673 * 19 18 17 24 24 H 1.08006 * 119.99641 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.00228 * 0.02562 * 1 2 3 26 26 H 1.08007 * 119.99892 * 179.97438 * 2 1 3 27 27 H 1.09013 * 109.46907 * 4.99707 * 3 2 1 28 28 H 1.08995 * 109.47126 * 245.00160 * 3 2 1 29 29 H 1.08998 * 109.47416 * 29.99430 * 5 4 3 30 30 H 1.08996 * 109.47223 * 150.00281 * 5 4 3 31 31 H 0.96997 * 120.00567 * 179.97438 * 9 8 6 32 32 H 1.08005 * 126.53336 * 359.96467 * 17 16 14 33 33 H 1.07995 * 126.54084 * 180.02562 * 18 17 16 34 34 H 0.97000 * 119.99694 * 359.97438 * 21 20 19 35 35 H 0.96991 * 120.00345 * 179.72885 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.6109 1.9981 2.3787 6 6 3.0303 3.4446 2.3248 7 1 3.5315 3.8293 1.4489 8 6 2.7742 4.2769 3.3938 9 7 2.1644 3.8085 4.4607 10 14 3.2947 6.0698 3.3273 11 1 2.1949 6.8834 2.7495 12 1 3.5964 6.5490 4.7001 13 1 4.5066 6.2022 2.4793 14 6 4.2017 0.7437 1.0249 15 8 4.9460 0.7048 1.9858 16 6 4.6203 0.1479 -0.2555 17 6 5.8563 -0.3621 -0.5333 18 6 5.8203 -0.8211 -1.8560 19 6 4.5636 -0.5723 -2.3291 20 6 4.0728 -0.8912 -3.6807 21 7 2.8046 -0.5921 -4.0253 22 8 4.8119 -1.4244 -4.4859 23 8 3.8516 0.0186 -1.3522 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6212 1.4025 -0.9313 29 1 1.5301 1.9378 2.5061 30 1 3.1037 1.5081 3.2185 31 1 1.9846 4.3940 5.2129 32 1 6.7009 -0.4027 0.1386 33 1 6.6313 -1.2843 -2.3982 34 1 2.2149 -0.1671 -3.3829 35 1 2.4826 -0.7985 -4.9166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292255735.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:15 Heat of formation + Delta-G solvation = -29.557714 kcal Electronic energy + Delta-G solvation = -21502.246625 eV Core-core repulsion = 18082.087560 eV Total energy + Delta-G solvation = -3420.159066 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.82394 -39.47593 -38.89075 -35.99559 -34.10434 -33.34718 -33.05741 -32.19465 -30.28524 -27.75334 -25.83015 -24.61780 -22.95819 -21.67775 -20.74302 -20.17192 -19.44549 -18.33690 -17.22939 -16.95078 -16.68360 -16.43274 -15.63907 -14.88685 -14.86059 -14.62715 -14.36456 -14.12843 -13.53548 -13.27056 -13.12183 -13.05463 -12.61509 -12.28554 -11.69034 -11.41379 -11.14569 -10.97729 -10.76134 -10.69275 -10.29332 -10.13965 -10.06839 -9.77591 -9.53523 -9.27646 -8.77592 -8.52268 -7.90987 -6.13591 -4.19579 0.68616 1.97605 2.34368 2.39663 2.97294 3.23388 3.25189 3.32507 3.36267 3.55640 3.77964 4.36736 4.57516 4.81069 4.90049 5.12749 5.21225 5.31692 5.45815 5.48188 5.69596 5.77647 5.95264 6.12717 6.19495 6.35497 6.56353 6.71346 6.79526 6.92571 7.05001 7.25335 7.35300 7.81383 7.83986 8.08372 8.10857 8.60697 8.85900 9.46021 10.94484 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021527 B = 0.004895 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.397951 B = 5718.431102 C = 6157.471465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.163 4.163 3 C 0.130 3.870 4 N -0.576 5.576 5 C 0.245 3.755 6 C -0.533 4.533 7 H 0.059 0.941 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.583 3.417 15 O -0.510 6.510 16 C -0.011 4.011 17 C -0.154 4.154 18 C -0.121 4.121 19 C -0.081 4.081 20 C 0.613 3.387 21 N -0.842 5.842 22 O -0.525 6.525 23 O -0.144 6.144 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.265 0.735 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.409 0.591 35 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.930 -8.214 -14.181 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.182 4.182 3 C 0.007 3.993 4 N -0.305 5.305 5 C 0.127 3.873 6 C -0.572 4.572 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.727 3.273 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.368 3.632 15 O -0.387 6.387 16 C -0.066 4.066 17 C -0.175 4.175 18 C -0.142 4.142 19 C -0.135 4.135 20 C 0.398 3.602 21 N -0.405 5.405 22 O -0.403 6.403 23 O -0.040 6.040 24 H 0.113 0.887 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.185 0.815 33 H 0.182 0.818 34 H 0.239 0.761 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.346 -8.383 -13.856 16.251 hybrid contribution -0.096 1.064 -0.019 1.069 sum -1.442 -7.319 -13.876 15.754 Atomic orbital electron populations 1.23829 0.95697 1.01843 1.00653 1.23378 0.96276 0.98784 0.99808 1.20837 0.93056 0.95704 0.89720 1.48238 1.13232 1.52346 1.16692 1.19453 0.96369 0.91920 0.79540 1.21400 1.39150 0.94119 1.02512 0.92263 1.24921 0.94897 0.99051 0.94995 1.69926 1.41260 1.36119 1.05723 0.86475 0.78993 0.84352 0.77497 1.20560 1.20989 1.19814 1.16808 0.82984 0.79313 0.84121 1.90856 1.52858 1.59134 1.35877 1.23176 0.91480 1.04387 0.87509 1.21949 0.97866 1.01240 0.96427 1.21922 0.96523 1.00959 0.94795 1.22229 0.93337 1.07156 0.90733 1.16631 0.82143 0.77738 0.83690 1.43696 1.13141 1.64534 1.19178 1.90898 1.56374 1.43361 1.49649 1.84371 1.39592 1.60630 1.19402 0.88679 0.88195 0.87867 0.88772 0.89787 0.94331 0.93326 0.92545 0.81529 0.81827 0.76122 0.75964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 14.32 29.01 0.42 -1.70 16 2 C -0.16 -2.18 8.95 -36.03 -0.32 -2.50 16 3 C 0.13 2.03 5.45 -5.19 -0.03 2.00 16 4 N -0.58 -11.77 2.46 -177.76 -0.44 -12.20 16 5 C 0.25 6.13 5.16 -5.20 -0.03 6.11 16 6 C -0.53 -14.50 9.39 -34.44 -0.32 -14.82 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 10 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 C 0.58 12.01 7.59 -12.58 -0.10 11.91 16 15 O -0.51 -12.35 16.43 5.27 0.09 -12.27 16 16 C -0.01 -0.18 6.75 -36.51 -0.25 -0.42 16 17 C -0.15 -2.24 10.60 -39.50 -0.42 -2.66 16 18 C -0.12 -1.56 10.60 -39.50 -0.42 -1.98 16 19 C -0.08 -1.04 7.14 -36.51 -0.26 -1.31 16 20 C 0.61 7.24 8.08 -12.58 -0.10 7.14 16 21 N -0.84 -6.55 8.87 30.40 0.27 -6.28 16 22 O -0.53 -7.70 17.70 5.27 0.09 -7.61 16 23 O -0.14 -1.96 6.18 4.34 0.03 -1.94 16 24 H 0.09 0.95 8.06 -52.48 -0.42 0.53 16 25 H 0.10 1.12 7.84 -52.49 -0.41 0.71 16 26 H 0.10 1.39 7.84 -52.48 -0.41 0.97 16 27 H 0.09 1.48 7.67 -51.92 -0.40 1.08 16 28 H 0.08 1.18 5.42 -51.93 -0.28 0.90 16 29 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 30 H 0.05 1.37 7.37 -51.93 -0.38 0.99 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.17 2.25 8.06 -52.48 -0.42 1.83 16 33 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.41 2.63 8.59 -40.82 -0.35 2.28 16 35 H 0.41 2.33 8.93 -40.82 -0.36 1.96 16 LS Contribution 317.30 15.07 4.78 4.78 Total: -1.00 -32.66 317.30 -5.22 -37.88 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -3.83 Total: 2.92 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.92 Total: 3.44 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.57 Total: -43.37 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: 0.21 Total: -21.81 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.66 -5.22 -37.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292255735.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.321 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds