Wall clock time and date at job start Tue Mar 31 2020 00:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 120.00134 * 2 1 4 4 N 1.46505 * 109.47509 * 124.99411 * 3 2 1 5 5 C 1.46490 * 120.00146 * 263.21421 * 4 3 2 6 6 C 1.50702 * 109.47091 * 269.99703 * 5 4 3 7 7 H 1.08002 * 120.00160 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00050 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00504 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00125 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46962 * 89.99975 * 10 8 6 12 12 H 1.48498 * 109.47559 * 209.99851 * 10 8 6 13 13 H 1.48500 * 109.47025 * 330.00327 * 10 8 6 14 14 C 1.34781 * 119.99448 * 83.21021 * 4 3 2 15 15 O 1.21605 * 119.99692 * 183.84266 * 14 4 3 16 16 C 1.47293 * 120.00257 * 3.84776 * 14 4 3 17 17 C 1.36560 * 125.80896 * 173.42655 * 16 14 4 18 18 C 1.40058 * 106.93223 * 180.02562 * 17 16 14 19 19 C 1.36568 * 106.92430 * 359.97438 * 18 17 16 20 20 C 1.47288 * 125.80898 * 180.02562 * 19 18 17 21 21 N 1.34779 * 120.00396 * 180.02562 * 20 19 18 22 22 O 1.21609 * 119.99926 * 0.02562 * 20 19 18 23 23 O 1.34552 * 108.38632 * 0.26673 * 19 18 17 24 24 H 1.08006 * 119.99641 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.00228 * 0.02562 * 1 2 3 26 26 H 1.08007 * 119.99892 * 179.97438 * 2 1 3 27 27 H 1.09013 * 109.46907 * 4.99707 * 3 2 1 28 28 H 1.08995 * 109.47126 * 245.00160 * 3 2 1 29 29 H 1.08998 * 109.47416 * 29.99430 * 5 4 3 30 30 H 1.08996 * 109.47223 * 150.00281 * 5 4 3 31 31 H 0.96997 * 120.00567 * 179.97438 * 9 8 6 32 32 H 1.08005 * 126.53336 * 359.96467 * 17 16 14 33 33 H 1.07995 * 126.54084 * 180.02562 * 18 17 16 34 34 H 0.97000 * 119.99694 * 359.97438 * 21 20 19 35 35 H 0.96991 * 120.00345 * 179.72885 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.6109 1.9981 2.3787 6 6 3.0303 3.4446 2.3248 7 1 3.5315 3.8293 1.4489 8 6 2.7742 4.2769 3.3938 9 7 2.1644 3.8085 4.4607 10 14 3.2947 6.0698 3.3273 11 1 2.1949 6.8834 2.7495 12 1 3.5964 6.5490 4.7001 13 1 4.5066 6.2022 2.4793 14 6 4.2017 0.7437 1.0249 15 8 4.9460 0.7048 1.9858 16 6 4.6203 0.1479 -0.2555 17 6 5.8563 -0.3621 -0.5333 18 6 5.8203 -0.8211 -1.8560 19 6 4.5636 -0.5723 -2.3291 20 6 4.0728 -0.8912 -3.6807 21 7 2.8046 -0.5921 -4.0253 22 8 4.8119 -1.4244 -4.4859 23 8 3.8516 0.0186 -1.3522 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6212 1.4025 -0.9313 29 1 1.5301 1.9378 2.5061 30 1 3.1037 1.5081 3.2185 31 1 1.9846 4.3940 5.2129 32 1 6.7009 -0.4027 0.1386 33 1 6.6313 -1.2843 -2.3982 34 1 2.2149 -0.1671 -3.3829 35 1 2.4826 -0.7985 -4.9166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292255735.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:14 Heat of formation + Delta-G solvation = -53.455008 kcal Electronic energy + Delta-G solvation = -21503.282890 eV Core-core repulsion = 18082.087560 eV Total energy + Delta-G solvation = -3421.195330 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.96465 -40.72266 -40.21567 -37.48885 -35.15916 -34.98920 -34.14695 -33.74121 -31.57649 -29.53259 -27.14397 -26.16668 -24.44551 -22.94976 -21.83589 -21.37371 -20.65977 -19.35720 -18.70401 -18.41559 -17.93813 -17.68137 -17.34395 -16.33763 -16.18166 -15.87446 -15.64462 -15.42127 -14.92706 -14.40268 -14.32650 -14.29928 -14.17545 -13.92406 -13.36378 -13.04630 -12.82971 -12.58589 -12.27266 -12.23067 -11.79519 -11.70327 -11.23625 -11.19573 -10.88236 -10.64836 -10.32834 -9.99946 -9.56975 -8.23870 -6.38778 -0.47301 0.81658 1.19758 1.29926 1.38814 1.41460 1.51733 1.98653 2.02791 2.21540 2.38541 2.50711 3.06921 3.39964 3.72768 3.86580 4.02744 4.19262 4.30256 4.39099 4.51246 4.72315 4.83573 4.96207 5.05534 5.12600 5.17809 5.38463 5.48776 5.69904 5.72526 5.75280 5.89250 6.00834 6.21036 6.47854 6.68452 7.03853 7.05447 7.32690 8.83639 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021527 B = 0.004895 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.397951 B = 5718.431102 C = 6157.471465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.182 4.182 3 C 0.129 3.871 4 N -0.582 5.582 5 C 0.262 3.738 6 C -0.547 4.547 7 H 0.055 0.945 8 C 0.014 3.986 9 N -0.925 5.925 10 Si 0.966 3.034 11 H -0.263 1.263 12 H -0.281 1.281 13 H -0.273 1.273 14 C 0.580 3.420 15 O -0.562 6.562 16 C -0.038 4.038 17 C -0.139 4.139 18 C -0.124 4.124 19 C -0.067 4.067 20 C 0.615 3.385 21 N -0.817 5.817 22 O -0.553 6.553 23 O -0.134 6.134 24 H 0.118 0.882 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.032 0.968 30 H 0.006 0.994 31 H 0.268 0.732 32 H 0.173 0.827 33 H 0.187 0.813 34 H 0.419 0.581 35 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 -8.125 -16.507 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.201 4.201 3 C 0.008 3.992 4 N -0.310 5.310 5 C 0.142 3.858 6 C -0.586 4.586 7 H 0.073 0.927 8 C -0.186 4.186 9 N -0.564 5.564 10 Si 0.791 3.209 11 H -0.188 1.188 12 H -0.207 1.207 13 H -0.198 1.198 14 C 0.367 3.633 15 O -0.444 6.444 16 C -0.093 4.093 17 C -0.159 4.159 18 C -0.144 4.144 19 C -0.121 4.121 20 C 0.399 3.601 21 N -0.381 5.381 22 O -0.433 6.433 23 O -0.030 6.030 24 H 0.136 0.864 25 H 0.123 0.877 26 H 0.121 0.879 27 H 0.109 0.891 28 H 0.119 0.881 29 H 0.050 0.950 30 H 0.024 0.976 31 H 0.077 0.923 32 H 0.190 0.810 33 H 0.204 0.796 34 H 0.250 0.750 35 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -2.119 -8.293 -16.234 18.352 hybrid contribution 0.043 0.960 0.608 1.137 sum -2.075 -7.333 -15.626 17.386 Atomic orbital electron populations 1.24067 0.95032 1.03179 0.97354 1.23152 0.96756 0.97433 1.02748 1.21046 0.92539 0.97111 0.88524 1.48193 1.14349 1.51885 1.16554 1.18900 0.95148 0.91125 0.80650 1.21659 1.39147 0.95236 1.02549 0.92682 1.25792 0.94748 1.03536 0.94522 1.70037 1.42181 1.37781 1.06393 0.85432 0.78872 0.79083 0.77535 1.18795 1.20663 1.19819 1.17196 0.82284 0.78661 0.85149 1.90808 1.54194 1.61231 1.38139 1.22275 0.92488 1.07368 0.87129 1.22152 0.97161 0.99413 0.97207 1.22157 0.97293 1.00982 0.93957 1.22630 0.93336 1.05300 0.90817 1.16499 0.83034 0.77786 0.82774 1.43542 1.11729 1.62761 1.20077 1.90901 1.57414 1.44932 1.50036 1.84316 1.39112 1.60760 1.18811 0.86382 0.87723 0.87878 0.89143 0.88120 0.95024 0.97569 0.92264 0.80992 0.79617 0.74953 0.74320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 14.32 67.78 0.97 -2.33 16 2 C -0.18 -4.60 8.95 25.64 0.23 -4.37 16 3 C 0.13 3.98 5.45 85.63 0.47 4.45 16 4 N -0.58 -24.49 2.46 -834.57 -2.05 -26.54 16 5 C 0.26 13.71 5.16 85.64 0.44 14.15 16 6 C -0.55 -30.55 9.39 25.60 0.24 -30.31 16 7 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 8 C 0.01 0.77 5.46 84.65 0.46 1.23 16 9 N -0.92 -54.25 13.29 21.45 0.28 -53.96 16 10 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 11 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 C 0.58 24.71 7.59 86.62 0.66 25.37 16 15 O -0.56 -28.76 16.43 -4.05 -0.07 -28.83 16 16 C -0.04 -1.25 6.75 24.26 0.16 -1.09 16 17 C -0.14 -3.91 10.60 22.32 0.24 -3.67 16 18 C -0.12 -2.91 10.60 22.32 0.24 -2.68 16 19 C -0.07 -1.57 7.14 24.26 0.17 -1.39 16 20 C 0.62 12.81 8.08 86.62 0.70 13.51 16 21 N -0.82 -10.03 8.87 -175.99 -1.56 -11.60 16 22 O -0.55 -14.84 17.70 -4.06 -0.07 -14.91 16 23 O -0.13 -3.44 6.18 -7.37 -0.05 -3.49 16 24 H 0.12 1.96 8.06 -2.91 -0.02 1.93 16 25 H 0.10 2.10 7.84 -2.91 -0.02 2.08 16 26 H 0.10 2.64 7.84 -2.91 -0.02 2.62 16 27 H 0.09 2.82 7.67 -2.38 -0.02 2.80 16 28 H 0.10 2.71 5.42 -2.39 -0.01 2.69 16 29 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 30 H 0.01 0.37 7.37 -2.39 -0.02 0.36 16 31 H 0.27 14.77 8.31 -92.71 -0.77 13.99 16 32 H 0.17 4.59 8.06 -2.91 -0.02 4.56 16 33 H 0.19 3.53 8.06 -2.91 -0.02 3.51 16 34 H 0.42 3.93 8.59 -92.71 -0.80 3.13 16 35 H 0.42 3.36 8.93 -92.71 -0.83 2.54 16 Total: -1.00 -72.69 317.30 3.01 -69.68 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -0.48 Total: 11.16 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 4.98 Total: 12.86 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -3.33 Total: -92.10 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -0.18 Total: -47.23 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -72.69 3.01 -69.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292255735.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.225 kcal (2) G-P(sol) polarization free energy of solvation -72.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds