Wall clock time and date at job start Mon Mar 30 2020 23:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47415 * 2 1 4 4 N 1.46498 * 109.46928 * 240.00280 * 2 1 3 5 5 C 1.34777 * 120.00114 * 65.55891 * 4 2 1 6 6 O 1.21685 * 120.00038 * 359.97438 * 5 4 2 7 7 C 1.46376 * 120.00213 * 180.02562 * 5 4 2 8 8 H 1.08004 * 120.00035 * 359.97438 * 7 5 4 9 9 C 1.40048 * 120.00002 * 179.97438 * 7 5 4 10 10 N 1.30667 * 120.00225 * 359.97438 * 9 7 5 11 11 Si 1.86804 * 119.99967 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46874 * 59.99853 * 11 9 7 13 13 H 1.48499 * 109.47285 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47127 * 300.00184 * 11 9 7 15 15 C 1.50704 * 109.47556 * 120.00512 * 2 1 3 16 16 C 1.38248 * 120.00216 * 125.21000 * 15 2 1 17 17 C 1.38218 * 120.00201 * 179.72651 * 16 15 2 18 18 C 1.38262 * 119.99664 * 0.27992 * 17 16 15 19 19 C 1.38217 * 119.99903 * 359.97438 * 18 17 16 20 20 C 1.38217 * 119.99431 * 305.41157 * 15 2 1 21 21 N 1.48011 * 120.00425 * 0.03684 * 20 15 2 22 22 O 1.21796 * 120.00244 * 173.39252 * 21 20 15 23 23 O 1.21798 * 119.99947 * 353.39388 * 21 20 15 24 24 H 1.09002 * 109.46658 * 269.47824 * 1 2 3 25 25 H 1.08999 * 109.47027 * 29.47262 * 1 2 3 26 26 H 1.08996 * 109.47186 * 149.48203 * 1 2 3 27 27 H 1.08999 * 109.47244 * 205.68466 * 3 2 1 28 28 H 1.08993 * 109.46969 * 325.68913 * 3 2 1 29 29 H 1.08998 * 109.46619 * 85.68637 * 3 2 1 30 30 H 0.97002 * 120.00232 * 245.56081 * 4 2 1 31 31 H 0.97000 * 120.00510 * 179.97438 * 10 9 7 32 32 H 1.08006 * 120.00094 * 0.02562 * 16 15 2 33 33 H 1.07996 * 120.00492 * 180.25929 * 17 16 15 34 34 H 1.07994 * 119.99750 * 179.97438 * 18 17 16 35 35 H 1.07996 * 119.99579 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.7875 -0.1684 -2.4171 6 8 1.1733 0.8763 -2.5259 7 6 2.2749 -0.8587 -3.6124 8 1 2.8198 -1.7862 -3.5159 9 6 2.0347 -0.3164 -4.8810 10 7 1.3751 0.8055 -4.9978 11 14 2.6573 -1.1969 -6.4064 12 1 2.0551 -2.5526 -6.4757 13 1 2.2751 -0.4235 -7.6151 14 1 4.1362 -1.3150 -6.3408 15 6 2.0324 -0.7105 1.2304 16 6 2.9137 -1.7684 1.1063 17 6 3.3789 -2.4164 2.2350 18 6 2.9584 -2.0103 3.4880 19 6 2.0732 -0.9560 3.6117 20 6 1.6089 -0.3071 2.4827 21 7 0.6612 0.8222 2.6153 22 8 0.1947 1.1009 3.7052 23 8 0.3480 1.4727 1.6343 24 1 -0.3633 -0.0094 1.0277 25 1 -0.3633 0.8947 -0.5056 26 1 -0.3633 -0.8853 -0.5218 27 1 3.0343 1.4763 -0.4454 28 1 1.3609 2.0680 -0.5792 29 1 2.0883 1.8107 1.0248 30 1 2.5076 -1.5236 -1.1096 31 1 1.2090 1.1814 -5.8765 32 1 3.2425 -2.0855 0.1276 33 1 4.0706 -3.2402 2.1384 34 1 3.3216 -2.5169 4.3699 35 1 1.7445 -0.6391 4.5904 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294119239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:41 Heat of formation + Delta-G solvation = 31.552416 kcal Electronic energy + Delta-G solvation = -22286.625518 eV Core-core repulsion = 18869.116387 eV Total energy + Delta-G solvation = -3417.509132 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.33021 -39.82234 -37.89260 -36.53709 -34.69307 -32.46948 -32.17033 -30.73976 -29.93969 -26.73791 -26.35893 -26.11532 -23.50440 -22.64098 -20.74970 -19.30558 -18.75612 -18.39911 -17.53416 -17.40903 -16.16754 -15.54599 -15.30124 -14.85891 -14.48519 -13.97980 -13.89705 -13.22524 -12.94879 -12.69334 -12.53686 -12.18243 -12.01211 -11.81165 -11.63763 -11.20932 -11.03684 -11.02510 -10.60560 -10.48778 -10.40763 -10.22862 -10.16172 -9.83257 -9.65942 -9.20894 -8.86274 -7.60499 -7.54919 -6.19800 -4.67100 -0.04416 0.86641 1.46396 1.60683 3.13317 3.18768 3.20147 3.21930 4.03792 4.25634 4.32259 4.54834 4.57310 4.59500 4.79641 5.00414 5.09038 5.40601 5.61898 5.65866 5.70920 5.91437 5.94784 6.01165 6.14829 6.21498 6.39856 6.42023 6.67376 6.74575 7.04573 7.16698 7.40202 7.80952 7.91915 8.01667 8.26636 8.99959 9.46680 10.58143 10.76889 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027379 B = 0.005307 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.427330 B = 5274.736673 C = 6103.544903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.217 3.783 3 C -0.124 4.124 4 N -0.764 5.764 5 C 0.558 3.442 6 O -0.564 6.564 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.090 3.910 10 N -0.765 5.765 11 Si 0.906 3.094 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.269 1.269 15 C -0.001 4.001 16 C -0.122 4.122 17 C -0.064 4.064 18 C -0.132 4.132 19 C -0.056 4.056 20 C -0.040 4.040 21 N 0.016 4.984 22 O -0.202 6.202 23 O -0.102 6.102 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.041 0.959 30 H 0.375 0.625 31 H 0.269 0.731 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.559 -7.165 14.283 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.129 3.871 3 C -0.182 4.182 4 N -0.423 5.423 5 C 0.362 3.638 6 O -0.445 6.445 7 C -0.584 4.584 8 H 0.083 0.917 9 C -0.131 4.131 10 N -0.393 5.393 11 Si 0.731 3.269 12 H -0.194 1.194 13 H -0.205 1.205 14 H -0.194 1.194 15 C -0.003 4.003 16 C -0.141 4.141 17 C -0.082 4.082 18 C -0.151 4.151 19 C -0.075 4.075 20 C -0.124 4.124 21 N 0.529 4.471 22 O -0.403 6.403 23 O -0.325 6.325 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.211 0.789 31 H 0.080 0.920 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.440 -6.759 14.119 16.271 hybrid contribution 0.376 -0.698 -0.611 1.001 sum 4.816 -7.456 13.509 16.164 Atomic orbital electron populations 1.22482 0.93316 1.03378 0.99757 1.18964 0.94300 0.92209 0.81630 1.22233 1.01555 0.94334 1.00072 1.46709 1.63308 1.27340 1.04968 1.18129 0.79708 0.84962 0.80968 1.90600 1.44134 1.24510 1.85286 1.20800 1.38585 1.09293 0.89758 0.91720 1.25658 0.93332 0.94209 0.99862 1.69990 1.29300 1.15666 1.24352 0.86466 0.79739 0.79963 0.80753 1.19376 1.20543 1.19373 1.20375 0.92572 0.93771 0.93580 1.21240 0.97189 0.95143 1.00493 1.21612 0.96567 0.97913 0.92073 1.21143 0.98337 0.97087 0.98536 1.20998 0.94714 0.93894 0.97857 1.20843 1.00899 0.94639 0.95971 1.43462 1.01153 1.02212 1.00254 1.94479 1.56942 1.74150 1.14716 1.94671 1.61497 1.48502 1.27818 0.94038 0.89591 0.93590 0.93515 0.89108 0.94013 0.78934 0.92005 0.83094 0.84053 0.83908 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 6.80 37.16 0.25 -2.40 16 2 C 0.22 4.20 0.77 -132.97 -0.10 4.10 16 3 C -0.12 -2.54 6.58 37.16 0.24 -2.30 16 4 N -0.76 -16.26 4.86 -50.08 -0.24 -16.50 16 5 C 0.56 15.07 7.18 -12.99 -0.09 14.97 16 6 O -0.56 -17.11 12.29 5.20 0.06 -17.05 16 7 C -0.55 -14.87 9.54 -35.63 -0.34 -15.21 16 8 H 0.06 1.60 7.85 -52.48 -0.41 1.18 16 9 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 10 N -0.76 -22.35 11.83 55.55 0.66 -21.69 16 11 Si 0.91 19.66 29.56 -169.99 -5.02 14.64 16 12 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 13 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 14 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 15 C 0.00 -0.02 4.76 -104.62 -0.50 -0.52 16 16 C -0.12 -1.51 9.26 -39.59 -0.37 -1.87 16 17 C -0.06 -0.57 10.05 -39.58 -0.40 -0.97 16 18 C -0.13 -1.13 10.05 -39.58 -0.40 -1.53 16 19 C -0.06 -0.62 9.56 -39.58 -0.38 -1.00 16 20 C -0.04 -0.59 6.02 -79.95 -0.48 -1.07 16 21 N 0.02 0.28 3.57 33.96 0.12 0.40 16 22 O -0.20 -3.41 18.47 -29.46 -0.54 -3.96 16 23 O -0.10 -1.91 10.19 -29.46 -0.30 -2.21 16 24 H 0.04 0.78 4.69 -52.64 -0.25 0.53 16 25 H 0.09 1.94 6.79 -51.93 -0.35 1.59 16 26 H 0.05 0.96 8.03 -51.93 -0.42 0.54 16 27 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 28 H 0.09 2.11 6.36 -51.93 -0.33 1.78 16 29 H 0.04 0.78 5.43 -51.93 -0.28 0.50 16 30 H 0.38 6.84 5.71 -40.82 -0.23 6.61 16 31 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 32 H 0.15 1.78 5.64 -52.48 -0.30 1.48 16 33 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.15 1.42 7.63 -52.49 -0.40 1.02 16 LS Contribution 288.77 15.07 4.35 4.35 Total: -1.00 -33.34 288.77 -6.94 -40.28 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -3.37 Total: 7.19 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -2.65 Total: -5.46 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.53 Total: -37.79 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.78 Total: -23.22 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.34 -6.94 -40.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294119239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.833 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds