Wall clock time and date at job start Mon Mar 30 2020 23:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47415 * 2 1 4 4 N 1.46498 * 109.46928 * 240.00280 * 2 1 3 5 5 C 1.34777 * 120.00114 * 65.55891 * 4 2 1 6 6 O 1.21685 * 120.00038 * 359.97438 * 5 4 2 7 7 C 1.46376 * 120.00213 * 180.02562 * 5 4 2 8 8 H 1.08004 * 120.00035 * 359.97438 * 7 5 4 9 9 C 1.40048 * 120.00002 * 179.97438 * 7 5 4 10 10 N 1.30667 * 120.00225 * 359.97438 * 9 7 5 11 11 Si 1.86804 * 119.99967 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46874 * 59.99853 * 11 9 7 13 13 H 1.48499 * 109.47285 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47127 * 300.00184 * 11 9 7 15 15 C 1.50704 * 109.47556 * 120.00512 * 2 1 3 16 16 C 1.38248 * 120.00216 * 125.21000 * 15 2 1 17 17 C 1.38218 * 120.00201 * 179.72651 * 16 15 2 18 18 C 1.38262 * 119.99664 * 0.27992 * 17 16 15 19 19 C 1.38217 * 119.99903 * 359.97438 * 18 17 16 20 20 C 1.38217 * 119.99431 * 305.41157 * 15 2 1 21 21 N 1.48011 * 120.00425 * 0.03684 * 20 15 2 22 22 O 1.21796 * 120.00244 * 173.39252 * 21 20 15 23 23 O 1.21798 * 119.99947 * 353.39388 * 21 20 15 24 24 H 1.09002 * 109.46658 * 269.47824 * 1 2 3 25 25 H 1.08999 * 109.47027 * 29.47262 * 1 2 3 26 26 H 1.08996 * 109.47186 * 149.48203 * 1 2 3 27 27 H 1.08999 * 109.47244 * 205.68466 * 3 2 1 28 28 H 1.08993 * 109.46969 * 325.68913 * 3 2 1 29 29 H 1.08998 * 109.46619 * 85.68637 * 3 2 1 30 30 H 0.97002 * 120.00232 * 245.56081 * 4 2 1 31 31 H 0.97000 * 120.00510 * 179.97438 * 10 9 7 32 32 H 1.08006 * 120.00094 * 0.02562 * 16 15 2 33 33 H 1.07996 * 120.00492 * 180.25929 * 17 16 15 34 34 H 1.07994 * 119.99750 * 179.97438 * 18 17 16 35 35 H 1.07996 * 119.99579 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.7875 -0.1684 -2.4171 6 8 1.1733 0.8763 -2.5259 7 6 2.2749 -0.8587 -3.6124 8 1 2.8198 -1.7862 -3.5159 9 6 2.0347 -0.3164 -4.8810 10 7 1.3751 0.8055 -4.9978 11 14 2.6573 -1.1969 -6.4064 12 1 2.0551 -2.5526 -6.4757 13 1 2.2751 -0.4235 -7.6151 14 1 4.1362 -1.3150 -6.3408 15 6 2.0324 -0.7105 1.2304 16 6 2.9137 -1.7684 1.1063 17 6 3.3789 -2.4164 2.2350 18 6 2.9584 -2.0103 3.4880 19 6 2.0732 -0.9560 3.6117 20 6 1.6089 -0.3071 2.4827 21 7 0.6612 0.8222 2.6153 22 8 0.1947 1.1009 3.7052 23 8 0.3480 1.4727 1.6343 24 1 -0.3633 -0.0094 1.0277 25 1 -0.3633 0.8947 -0.5056 26 1 -0.3633 -0.8853 -0.5218 27 1 3.0343 1.4763 -0.4454 28 1 1.3609 2.0680 -0.5792 29 1 2.0883 1.8107 1.0248 30 1 2.5076 -1.5236 -1.1096 31 1 1.2090 1.1814 -5.8765 32 1 3.2425 -2.0855 0.1276 33 1 4.0706 -3.2402 2.1384 34 1 3.3216 -2.5169 4.3699 35 1 1.7445 -0.6391 4.5904 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294119239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:41 Heat of formation + Delta-G solvation = 8.839316 kcal Electronic energy + Delta-G solvation = -22287.610432 eV Core-core repulsion = 18869.116387 eV Total energy + Delta-G solvation = -3418.494046 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.57632 -41.05570 -39.44711 -38.01040 -36.34914 -34.51890 -33.33449 -32.13492 -31.33337 -28.43711 -28.18627 -27.50014 -24.70195 -23.80174 -22.31004 -20.58880 -20.41880 -19.65644 -19.09542 -18.81510 -17.58990 -17.22558 -16.54512 -16.00003 -15.76757 -15.52832 -15.39612 -14.76147 -14.48843 -14.39264 -13.70682 -13.59086 -13.58652 -13.45037 -13.07652 -12.74057 -12.73615 -12.53755 -12.33834 -12.16062 -12.07009 -11.99781 -11.59978 -11.29091 -10.88573 -10.57137 -10.20399 -9.69465 -9.49340 -8.24479 -6.82239 -1.19073 -0.02894 0.34209 0.46126 1.40992 1.44409 1.55683 2.24544 2.33389 2.52703 2.84782 3.16123 3.42105 3.65642 3.75310 3.92866 3.99631 4.08975 4.22754 4.28682 4.50937 4.57679 4.72007 4.74776 4.89383 4.91669 5.01327 5.13917 5.27023 5.31108 5.33589 5.39537 5.58937 5.88308 6.21176 6.26916 6.55886 6.90283 7.56060 8.55116 8.72630 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027379 B = 0.005307 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.427330 B = 5274.736673 C = 6103.544903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.218 3.782 3 C -0.109 4.109 4 N -0.750 5.750 5 C 0.543 3.457 6 O -0.610 6.610 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.031 3.969 10 N -0.821 5.821 11 Si 0.995 3.005 12 H -0.255 1.255 13 H -0.278 1.278 14 H -0.254 1.254 15 C -0.028 4.028 16 C -0.130 4.130 17 C -0.038 4.038 18 C -0.107 4.107 19 C -0.051 4.051 20 C -0.060 4.060 21 N 0.021 4.979 22 O -0.177 6.177 23 O -0.177 6.177 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.393 0.607 31 H 0.273 0.727 32 H 0.152 0.848 33 H 0.189 0.811 34 H 0.194 0.806 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.191 -11.033 16.537 21.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.130 3.870 3 C -0.167 4.167 4 N -0.409 5.409 5 C 0.347 3.653 6 O -0.495 6.495 7 C -0.611 4.611 8 H 0.106 0.894 9 C -0.184 4.184 10 N -0.450 5.450 11 Si 0.815 3.185 12 H -0.179 1.179 13 H -0.203 1.203 14 H -0.178 1.178 15 C -0.030 4.030 16 C -0.149 4.149 17 C -0.056 4.056 18 C -0.125 4.125 19 C -0.070 4.070 20 C -0.144 4.144 21 N 0.528 4.472 22 O -0.388 6.388 23 O -0.382 6.382 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.231 0.769 31 H 0.083 0.917 32 H 0.169 0.831 33 H 0.206 0.794 34 H 0.211 0.789 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.085 -10.621 16.282 20.691 hybrid contribution -0.383 0.393 -1.006 1.146 sum 6.702 -10.228 15.275 19.567 Atomic orbital electron populations 1.22317 0.94748 1.00520 1.00015 1.18787 0.93392 0.91780 0.82997 1.22023 0.99296 0.95345 1.00071 1.46312 1.62529 1.27709 1.04342 1.18500 0.79351 0.84612 0.82838 1.90577 1.45958 1.26440 1.86486 1.21373 1.39033 1.10263 0.90414 0.89411 1.26905 0.92883 0.94747 1.03908 1.70182 1.31225 1.18042 1.25550 0.85113 0.79625 0.78620 0.75181 1.17920 1.20315 1.17758 1.19985 0.95419 0.95835 0.91761 1.21389 0.96742 0.94538 1.02250 1.22144 0.95263 0.97460 0.90704 1.21781 0.95583 0.94984 1.00133 1.21455 0.94497 0.93882 0.97206 1.21076 1.01621 0.94633 0.97109 1.43922 1.01026 1.02483 0.99770 1.94420 1.56085 1.73749 1.14581 1.94708 1.64291 1.51030 1.28220 0.92356 0.93459 0.95106 0.95081 0.93258 0.92357 0.76936 0.91742 0.83066 0.79403 0.78851 0.81233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 6.80 71.98 0.49 -4.71 16 2 C 0.22 8.93 0.77 2.86 0.00 8.93 16 3 C -0.11 -4.90 6.58 71.98 0.47 -4.42 16 4 N -0.75 -33.22 4.86 -430.57 -2.09 -35.31 16 5 C 0.54 30.89 7.18 86.36 0.62 31.51 16 6 O -0.61 -39.96 12.29 -4.30 -0.05 -40.01 16 7 C -0.57 -31.85 9.54 24.83 0.24 -31.61 16 8 H 0.09 4.28 7.85 -2.91 -0.02 4.26 16 9 C 0.03 1.70 5.50 85.31 0.47 2.17 16 10 N -0.82 -50.22 11.83 21.83 0.26 -49.96 16 11 Si 0.99 40.48 29.56 68.60 2.03 42.51 16 12 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 13 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 14 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 15 C -0.03 -0.86 4.76 -19.87 -0.09 -0.95 16 16 C -0.13 -2.83 9.26 22.27 0.21 -2.62 16 17 C -0.04 -0.44 10.05 22.27 0.22 -0.22 16 18 C -0.11 -1.08 10.05 22.27 0.22 -0.86 16 19 C -0.05 -0.91 9.56 22.27 0.21 -0.70 16 20 C -0.06 -1.70 6.02 36.38 0.22 -1.48 16 21 N 0.02 0.71 3.57 -46.47 -0.17 0.55 16 22 O -0.18 -5.79 18.47 18.89 0.35 -5.44 16 23 O -0.18 -7.15 10.19 18.89 0.19 -6.96 16 24 H 0.06 2.35 4.69 -13.72 -0.06 2.29 16 25 H 0.05 2.40 6.79 -2.39 -0.02 2.38 16 26 H 0.03 1.38 8.03 -2.39 -0.02 1.36 16 27 H 0.03 1.41 8.08 -2.39 -0.02 1.39 16 28 H 0.05 2.57 6.36 -2.39 -0.02 2.56 16 29 H 0.06 2.37 5.43 -2.39 -0.01 2.36 16 30 H 0.39 14.34 5.71 -92.71 -0.53 13.81 16 31 H 0.27 15.27 8.29 -92.71 -0.77 14.50 16 32 H 0.15 3.19 5.64 -2.91 -0.02 3.17 16 33 H 0.19 0.58 8.06 -2.91 -0.02 0.56 16 34 H 0.19 0.20 8.06 -2.91 -0.02 0.18 16 35 H 0.17 2.35 7.63 -2.91 -0.02 2.32 16 Total: -1.00 -81.17 288.77 4.37 -76.81 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.57 Total: 22.79 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 3.28 Total: -4.97 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -2.00 Total: -84.72 kcal Atomic # 8 Polarization: -52.90 SS G_CDS: 0.49 Total: -52.42 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -81.17 4.37 -76.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294119239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.646 kcal (2) G-P(sol) polarization free energy of solvation -81.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds