Wall clock time and date at job start Tue Mar 31 2020 01:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47242 * 2 1 4 4 C 1.36599 * 119.99966 * 264.09514 * 3 2 1 5 5 H 1.07997 * 120.00141 * 140.72491 * 4 3 2 6 6 C 1.39245 * 119.99828 * 320.73071 * 4 3 2 7 7 N 1.31238 * 119.99839 * 163.58612 * 6 4 3 8 8 Si 1.86792 * 120.00320 * 343.58118 * 6 4 3 9 9 H 1.48503 * 109.47214 * 89.62892 * 8 6 4 10 10 H 1.48497 * 109.47582 * 209.62822 * 8 6 4 11 11 H 1.48505 * 109.47209 * 329.63076 * 8 6 4 12 12 C 1.34771 * 119.99824 * 84.09495 * 3 2 1 13 13 O 1.21561 * 120.00049 * 182.67418 * 12 3 2 14 14 C 1.48087 * 120.00275 * 2.67933 * 12 3 2 15 15 C 1.39464 * 119.57759 * 173.42781 * 14 12 3 16 16 C 1.38334 * 119.19704 * 179.97438 * 15 14 12 17 17 C 1.40019 * 118.35927 * 0.02562 * 16 15 14 18 18 C 1.47811 * 120.45673 * 179.97438 * 17 16 15 19 19 O 1.21459 * 119.99877 * 0.02562 * 18 17 16 20 20 O 1.34710 * 120.00081 * 180.02562 * 18 17 16 21 21 C 1.45199 * 116.99923 * 179.97438 * 20 18 17 22 22 C 1.39805 * 119.08418 * 0.02562 * 17 16 15 23 23 N 1.31389 * 120.71548 * 359.97438 * 22 17 16 24 24 H 1.08997 * 109.47389 * 60.00002 * 1 2 3 25 25 H 1.09004 * 109.47112 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47354 * 300.00200 * 1 2 3 27 27 H 1.09002 * 109.47354 * 239.99800 * 2 1 3 28 28 H 1.08997 * 109.47389 * 119.99998 * 2 1 3 29 29 H 0.96995 * 120.00522 * 179.97438 * 7 6 4 30 30 H 1.07997 * 120.40079 * 0.27697 * 15 14 12 31 31 H 1.07996 * 120.82054 * 180.02562 * 16 15 14 32 32 H 1.09003 * 109.47164 * 60.00202 * 21 20 18 33 33 H 1.09004 * 109.47067 * 179.97438 * 21 20 18 34 34 H 1.09003 * 109.47361 * 300.00258 * 21 20 18 35 35 H 1.07999 * 119.63904 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3607 1.9846 -1.1767 5 1 2.1148 3.0230 -1.3427 6 6 3.0268 1.2607 -2.1622 7 7 3.0732 1.7158 -3.3923 8 14 3.8545 -0.3580 -1.7335 9 1 2.8867 -1.4706 -1.9091 10 1 5.0203 -0.5703 -2.6286 11 1 4.3145 -0.3203 -0.3220 12 6 2.1297 2.0566 1.1610 13 8 2.4885 3.2180 1.1565 14 6 1.8152 1.3837 2.4421 15 6 2.0640 2.0434 3.6454 16 6 1.7667 1.4078 4.8375 17 6 1.2245 0.1179 4.7863 18 6 0.8901 -0.6043 6.0318 19 8 1.0848 -0.0789 7.1094 20 8 0.3693 -1.8452 5.9718 21 6 0.0657 -2.4945 7.2346 22 6 1.0048 -0.4780 3.5408 23 7 1.3007 0.1592 2.4305 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.5375 1.2119 -4.0788 30 1 2.4792 3.0404 3.6464 31 1 1.9484 1.8944 5.7844 32 1 -0.6622 -1.8977 7.7842 33 1 -0.3471 -3.4851 7.0438 34 1 0.9781 -2.5879 7.8237 35 1 0.5874 -1.4728 3.4908 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299297353.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:09 Heat of formation + Delta-G solvation = -45.639278 kcal Electronic energy + Delta-G solvation = -21508.343965 eV Core-core repulsion = 18087.487551 eV Total energy + Delta-G solvation = -3420.856415 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.90237 -39.96050 -38.15474 -36.62261 -35.38192 -32.93868 -32.12191 -31.55150 -29.69377 -28.14632 -26.11898 -24.18366 -23.48710 -22.84942 -21.47916 -19.87178 -18.24552 -17.37614 -17.06830 -16.57868 -16.52849 -16.23430 -15.57679 -14.75736 -14.66428 -14.24040 -13.94936 -13.67968 -13.55799 -13.12912 -12.91803 -12.70403 -12.50226 -12.36621 -12.20899 -11.94344 -11.45886 -11.05742 -11.04678 -10.86547 -10.76645 -10.26959 -10.01465 -9.76924 -9.29989 -9.13697 -9.06987 -8.57388 -7.82907 -6.59399 -4.09815 0.28701 1.28476 2.28200 2.45352 2.97614 3.13782 3.19566 3.42291 3.99583 4.07411 4.23527 4.42820 4.61170 4.78131 4.83059 4.85439 4.92594 5.02233 5.15146 5.25084 5.41196 5.78854 5.82545 5.95602 5.98770 6.12443 6.17257 6.25109 6.42343 6.59946 6.69449 7.00638 7.36719 7.51633 7.82910 8.12515 8.36207 8.76831 9.11310 9.62923 10.50166 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028253 B = 0.004857 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.815631 B = 5763.662214 C = 6251.655520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 N -0.421 5.421 4 C -0.304 4.304 5 H 0.112 0.888 6 C 0.061 3.939 7 N -0.846 5.846 8 Si 0.890 3.110 9 H -0.267 1.267 10 H -0.286 1.286 11 H -0.262 1.262 12 C 0.481 3.519 13 O -0.565 6.565 14 C 0.143 3.857 15 C -0.140 4.140 16 C -0.015 4.015 17 C -0.196 4.196 18 C 0.518 3.482 19 O -0.510 6.510 20 O -0.354 6.354 21 C 0.038 3.962 22 C 0.153 3.847 23 N -0.466 5.466 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.280 0.720 30 H 0.155 0.845 31 H 0.148 0.852 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.231 -10.236 15.219 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.053 4.053 3 N -0.138 5.138 4 C -0.432 4.432 5 H 0.129 0.871 6 C -0.148 4.148 7 N -0.481 5.481 8 Si 0.718 3.282 9 H -0.194 1.194 10 H -0.213 1.213 11 H -0.186 1.186 12 C 0.270 3.730 13 O -0.448 6.448 14 C 0.006 3.994 15 C -0.161 4.161 16 C -0.040 4.040 17 C -0.200 4.200 18 C 0.363 3.637 19 O -0.399 6.399 20 O -0.271 6.271 21 C -0.056 4.056 22 C -0.007 4.007 23 N -0.178 5.178 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.173 0.827 31 H 0.166 0.834 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.075 -9.908 14.467 18.254 hybrid contribution 0.513 -0.602 1.080 1.339 sum -4.562 -10.510 15.547 19.313 Atomic orbital electron populations 1.21868 0.95822 1.00695 1.01549 1.22488 0.95429 0.84661 1.02718 1.43763 1.52362 1.12131 1.05518 1.19275 1.35465 0.99449 0.89018 0.87079 1.25511 0.95690 0.98881 0.94683 1.69616 1.38289 1.39482 1.00669 0.86790 0.79150 0.82653 0.79641 1.19438 1.21308 1.18638 1.17735 0.85445 0.87779 0.82063 1.90669 1.52408 1.16206 1.85545 1.22219 0.91428 0.89895 0.95862 1.22049 1.00970 1.02220 0.90879 1.21626 0.91269 0.91761 0.99367 1.20093 1.10520 0.97044 0.92342 1.21043 0.73768 0.79719 0.89142 1.90820 1.50639 1.67715 1.30733 1.86543 1.74473 1.29687 1.36368 1.23282 1.01429 0.97315 0.83584 1.23338 0.91583 0.99401 0.86402 1.68510 1.12243 1.08345 1.28723 0.92810 0.92879 0.92816 0.92019 0.87586 0.90968 0.82733 0.83429 0.91826 0.87893 0.91831 0.81288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.61 37.15 0.36 -2.18 16 2 C 0.07 1.45 4.21 -4.04 -0.02 1.43 16 3 N -0.42 -10.30 2.18 -115.82 -0.25 -10.55 16 4 C -0.30 -8.45 9.38 -15.05 -0.14 -8.59 16 5 H 0.11 3.43 7.91 -52.49 -0.42 3.02 16 6 C 0.06 1.65 5.36 -17.43 -0.09 1.55 16 7 N -0.85 -23.55 13.95 55.51 0.77 -22.78 16 8 Si 0.89 20.30 24.93 -169.99 -4.24 16.06 16 9 H -0.27 -5.65 6.50 56.52 0.37 -5.28 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 12 C 0.48 11.48 7.56 -12.22 -0.09 11.39 16 13 O -0.57 -15.18 16.20 5.31 0.09 -15.09 16 14 C 0.14 2.71 6.57 -82.94 -0.54 2.17 16 15 C -0.14 -2.26 9.62 -39.09 -0.38 -2.63 16 16 C -0.01 -0.20 9.71 -38.88 -0.38 -0.58 16 17 C -0.20 -2.61 5.90 -104.73 -0.62 -3.23 16 18 C 0.52 6.64 7.91 34.65 0.27 6.91 16 19 O -0.51 -7.49 16.20 -19.23 -0.31 -7.81 16 20 O -0.35 -3.78 9.84 -40.52 -0.40 -4.17 16 21 C 0.04 0.28 10.56 101.05 1.07 1.35 16 22 C 0.15 2.06 10.78 -17.16 -0.18 1.87 16 23 N -0.47 -7.80 4.36 -9.48 -0.04 -7.84 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.95 6.87 -51.93 -0.36 0.59 16 27 H 0.06 1.33 3.21 -51.93 -0.17 1.17 16 28 H 0.11 2.05 5.16 -53.54 -0.28 1.77 16 29 H 0.28 7.15 8.30 -40.82 -0.34 6.81 16 30 H 0.16 2.43 7.64 -52.49 -0.40 2.03 16 31 H 0.15 1.73 7.73 -52.49 -0.41 1.32 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.17 1.77 7.62 -52.49 -0.40 1.37 16 LS Contribution 300.67 15.07 4.53 4.53 Total: -1.00 -31.69 300.67 -4.30 -35.99 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -3.70 Total: 2.20 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -0.75 Total: 9.46 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.48 Total: -41.17 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.62 Total: -27.07 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.24 Total: 16.06 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.69 -4.30 -35.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299297353.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.651 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds