Wall clock time and date at job start Tue Mar 31 2020 01:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47242 * 2 1 4 4 C 1.36599 * 119.99966 * 264.09514 * 3 2 1 5 5 H 1.07997 * 120.00141 * 140.72491 * 4 3 2 6 6 C 1.39245 * 119.99828 * 320.73071 * 4 3 2 7 7 N 1.31238 * 119.99839 * 163.58612 * 6 4 3 8 8 Si 1.86792 * 120.00320 * 343.58118 * 6 4 3 9 9 H 1.48503 * 109.47214 * 89.62892 * 8 6 4 10 10 H 1.48497 * 109.47582 * 209.62822 * 8 6 4 11 11 H 1.48505 * 109.47209 * 329.63076 * 8 6 4 12 12 C 1.34771 * 119.99824 * 84.09495 * 3 2 1 13 13 O 1.21561 * 120.00049 * 182.67418 * 12 3 2 14 14 C 1.48087 * 120.00275 * 2.67933 * 12 3 2 15 15 C 1.39464 * 119.57759 * 173.42781 * 14 12 3 16 16 C 1.38334 * 119.19704 * 179.97438 * 15 14 12 17 17 C 1.40019 * 118.35927 * 0.02562 * 16 15 14 18 18 C 1.47811 * 120.45673 * 179.97438 * 17 16 15 19 19 O 1.21459 * 119.99877 * 0.02562 * 18 17 16 20 20 O 1.34710 * 120.00081 * 180.02562 * 18 17 16 21 21 C 1.45199 * 116.99923 * 179.97438 * 20 18 17 22 22 C 1.39805 * 119.08418 * 0.02562 * 17 16 15 23 23 N 1.31389 * 120.71548 * 359.97438 * 22 17 16 24 24 H 1.08997 * 109.47389 * 60.00002 * 1 2 3 25 25 H 1.09004 * 109.47112 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47354 * 300.00200 * 1 2 3 27 27 H 1.09002 * 109.47354 * 239.99800 * 2 1 3 28 28 H 1.08997 * 109.47389 * 119.99998 * 2 1 3 29 29 H 0.96995 * 120.00522 * 179.97438 * 7 6 4 30 30 H 1.07997 * 120.40079 * 0.27697 * 15 14 12 31 31 H 1.07996 * 120.82054 * 180.02562 * 16 15 14 32 32 H 1.09003 * 109.47164 * 60.00202 * 21 20 18 33 33 H 1.09004 * 109.47067 * 179.97438 * 21 20 18 34 34 H 1.09003 * 109.47361 * 300.00258 * 21 20 18 35 35 H 1.07999 * 119.63904 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3607 1.9846 -1.1767 5 1 2.1148 3.0230 -1.3427 6 6 3.0268 1.2607 -2.1622 7 7 3.0732 1.7158 -3.3923 8 14 3.8545 -0.3580 -1.7335 9 1 2.8867 -1.4706 -1.9091 10 1 5.0203 -0.5703 -2.6286 11 1 4.3145 -0.3203 -0.3220 12 6 2.1297 2.0566 1.1610 13 8 2.4885 3.2180 1.1565 14 6 1.8152 1.3837 2.4421 15 6 2.0640 2.0434 3.6454 16 6 1.7667 1.4078 4.8375 17 6 1.2245 0.1179 4.7863 18 6 0.8901 -0.6043 6.0318 19 8 1.0848 -0.0789 7.1094 20 8 0.3693 -1.8452 5.9718 21 6 0.0657 -2.4945 7.2346 22 6 1.0048 -0.4780 3.5408 23 7 1.3007 0.1592 2.4305 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.5375 1.2119 -4.0788 30 1 2.4792 3.0404 3.6464 31 1 1.9484 1.8944 5.7844 32 1 -0.6622 -1.8977 7.7842 33 1 -0.3471 -3.4851 7.0438 34 1 0.9781 -2.5879 7.8237 35 1 0.5874 -1.4728 3.4908 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299297353.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:09 Heat of formation + Delta-G solvation = -66.707559 kcal Electronic energy + Delta-G solvation = -21509.257555 eV Core-core repulsion = 18087.487551 eV Total energy + Delta-G solvation = -3421.770004 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.10773 -41.21011 -39.75946 -37.57304 -37.24699 -34.62122 -33.65349 -32.84506 -31.33502 -29.01636 -27.65219 -25.67166 -24.72729 -24.40582 -22.62355 -21.46398 -19.38153 -18.89306 -18.48018 -18.16082 -17.74498 -17.43792 -17.05218 -16.37469 -15.92560 -15.72335 -15.25536 -15.06522 -14.88951 -14.47019 -14.38337 -14.16095 -14.06789 -13.65308 -13.56399 -13.04489 -13.01198 -12.65974 -12.54885 -11.99825 -11.88839 -11.80928 -11.68484 -11.17781 -11.03525 -10.85808 -10.40743 -10.17705 -9.70874 -8.59062 -6.22628 -0.94697 0.10052 1.09827 1.20763 1.32641 1.42359 1.55696 1.94224 2.13173 2.45124 2.68523 2.93075 3.12530 3.54902 3.68122 3.75034 3.88262 3.96453 4.23636 4.34402 4.39697 4.58644 4.65590 4.73104 4.79853 4.80943 4.85374 5.03868 5.16231 5.22755 5.30260 5.48674 5.56030 5.96909 6.38591 6.54460 6.62963 6.81607 7.16473 7.72418 8.56552 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028253 B = 0.004857 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.815631 B = 5763.662214 C = 6251.655520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.067 3.933 3 N -0.438 5.438 4 C -0.337 4.337 5 H 0.051 0.949 6 C 0.020 3.980 7 N -0.898 5.898 8 Si 0.953 3.047 9 H -0.232 1.232 10 H -0.283 1.283 11 H -0.264 1.264 12 C 0.482 3.518 13 O -0.608 6.608 14 C 0.121 3.879 15 C -0.135 4.135 16 C -0.001 4.001 17 C -0.176 4.176 18 C 0.525 3.475 19 O -0.527 6.527 20 O -0.350 6.350 21 C 0.029 3.971 22 C 0.163 3.837 23 N -0.471 5.471 24 H 0.029 0.971 25 H 0.093 0.907 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.128 0.872 29 H 0.285 0.715 30 H 0.152 0.848 31 H 0.173 0.827 32 H 0.065 0.935 33 H 0.136 0.864 34 H 0.064 0.936 35 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.100 -14.163 18.789 24.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.054 4.054 3 N -0.155 5.155 4 C -0.465 4.465 5 H 0.069 0.931 6 C -0.185 4.185 7 N -0.534 5.534 8 Si 0.776 3.224 9 H -0.157 1.157 10 H -0.210 1.210 11 H -0.189 1.189 12 C 0.271 3.729 13 O -0.494 6.494 14 C -0.015 4.015 15 C -0.156 4.156 16 C -0.026 4.026 17 C -0.180 4.180 18 C 0.370 3.630 19 O -0.418 6.418 20 O -0.266 6.266 21 C -0.063 4.063 22 C 0.002 3.998 23 N -0.183 5.183 24 H 0.048 0.952 25 H 0.111 0.889 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.145 0.855 29 H 0.095 0.905 30 H 0.170 0.830 31 H 0.190 0.810 32 H 0.083 0.917 33 H 0.154 0.846 34 H 0.083 0.917 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -5.979 -13.868 18.039 23.526 hybrid contribution 0.634 0.608 0.419 0.973 sum -5.346 -13.260 18.457 23.347 Atomic orbital electron populations 1.21817 0.93966 1.02881 1.00433 1.22742 0.97062 0.82438 1.03154 1.43802 1.53651 1.13574 1.04514 1.18787 1.38421 0.97690 0.91645 0.93085 1.26236 0.95428 1.02826 0.93981 1.69720 1.40098 1.41814 1.01805 0.85813 0.78585 0.79033 0.78938 1.15658 1.20962 1.18853 1.18521 0.83406 0.87215 0.83743 1.90618 1.53500 1.18363 1.86869 1.21479 0.94794 0.91352 0.93885 1.22045 1.00546 1.02203 0.90828 1.21842 0.89769 0.91837 0.99155 1.20328 1.07993 0.96589 0.93062 1.20797 0.73563 0.80381 0.88214 1.90835 1.51337 1.68351 1.31257 1.86528 1.73586 1.28300 1.38171 1.23647 1.01771 0.98538 0.82385 1.23878 0.90372 1.00326 0.85179 1.68293 1.12114 1.07328 1.30558 0.95189 0.88853 0.92709 0.92894 0.85481 0.90476 0.83045 0.80999 0.91660 0.84586 0.91673 0.77370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 9.61 71.98 0.69 -3.88 16 2 C 0.07 2.72 4.21 86.38 0.36 3.08 16 3 N -0.44 -22.19 2.18 -638.62 -1.39 -23.59 16 4 C -0.34 -20.14 9.38 84.19 0.79 -19.35 16 5 H 0.05 3.54 7.91 -2.91 -0.02 3.51 16 6 C 0.02 1.11 5.36 85.02 0.46 1.56 16 7 N -0.90 -53.03 13.95 21.71 0.30 -52.73 16 8 Si 0.95 42.18 24.93 68.60 1.71 43.89 16 9 H -0.23 -8.89 6.50 99.48 0.65 -8.24 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 12 C 0.48 23.78 7.56 86.86 0.66 24.43 16 13 O -0.61 -34.65 16.20 -3.91 -0.06 -34.71 16 14 C 0.12 4.45 6.57 41.90 0.28 4.72 16 15 C -0.13 -4.12 9.62 22.59 0.22 -3.90 16 16 C 0.00 -0.02 9.71 22.72 0.22 0.20 16 17 C -0.18 -3.87 5.90 -19.93 -0.12 -3.99 16 18 C 0.53 10.90 7.91 70.36 0.56 11.46 16 19 O -0.53 -13.25 16.20 19.97 0.32 -12.93 16 20 O -0.35 -5.59 9.84 -56.20 -0.55 -6.15 16 21 C 0.03 0.29 10.56 113.37 1.20 1.49 16 22 C 0.16 3.57 10.78 85.14 0.92 4.48 16 23 N -0.47 -14.28 4.36 -183.90 -0.80 -15.08 16 24 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.05 1.84 6.87 -2.39 -0.02 1.83 16 27 H 0.05 2.21 3.21 -2.39 -0.01 2.20 16 28 H 0.13 4.55 5.16 -5.57 -0.03 4.52 16 29 H 0.29 15.29 8.30 -92.71 -0.77 14.52 16 30 H 0.15 4.71 7.64 -2.91 -0.02 4.69 16 31 H 0.17 3.30 7.73 -2.91 -0.02 3.28 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.14 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.21 2.98 7.62 -2.91 -0.02 2.95 16 Total: -1.00 -75.68 300.67 6.80 -68.88 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 1.05 Total: 12.10 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: 6.23 Total: 20.32 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -1.89 Total: -91.40 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -0.29 Total: -53.79 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.71 Total: 43.89 kcal Total: -75.68 6.80 -68.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299297353.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.169 kcal (2) G-P(sol) polarization free energy of solvation -75.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds