Wall clock time and date at job start Tue Mar 31 2020 01:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21302 * 119.99945 * 2 1 4 4 C 1.46760 * 119.99941 * 179.97438 * 2 1 3 5 5 C 1.40132 * 120.09292 * 359.97438 * 4 2 1 6 6 C 1.36525 * 119.89746 * 179.72174 * 5 4 2 7 7 C 1.39331 * 120.09739 * 0.26164 * 6 5 4 8 8 N 1.38895 * 119.90382 * 179.97438 * 7 6 5 9 9 C 1.46497 * 119.99901 * 354.31632 * 8 7 6 10 10 H 1.08997 * 109.47234 * 35.00072 * 9 8 7 11 11 C 1.52998 * 109.46907 * 274.99896 * 9 8 7 12 12 C 1.50704 * 109.46830 * 154.99993 * 9 8 7 13 13 H 1.07998 * 120.00104 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99691 * 179.97438 * 12 9 8 15 15 N 1.31512 * 120.00089 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 119.99956 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.47287 * 60.00410 * 16 14 12 18 18 H 1.48501 * 109.47360 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47184 * 300.00369 * 16 14 12 20 20 C 1.39301 * 120.19271 * 0.02562 * 7 6 5 21 21 N 1.48012 * 119.95122 * 180.02562 * 20 7 6 22 22 O 1.21799 * 119.99823 * 322.47426 * 21 20 7 23 23 O 1.21797 * 120.00002 * 142.47803 * 21 20 7 24 24 C 1.36559 * 120.09589 * 359.97438 * 20 7 6 25 25 H 1.09003 * 109.47266 * 239.99932 * 1 2 3 26 26 H 1.08994 * 109.47418 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47026 * 120.00137 * 1 2 3 28 28 H 1.08001 * 120.04809 * 0.02562 * 5 4 2 29 29 H 1.08004 * 119.95046 * 180.28293 * 6 5 4 30 30 H 0.97006 * 119.99649 * 174.31709 * 8 7 6 31 31 H 1.08997 * 109.47317 * 300.00125 * 11 9 8 32 32 H 1.09001 * 109.46821 * 60.00748 * 11 9 8 33 33 H 1.09005 * 109.46537 * 180.02562 * 11 9 8 34 34 H 0.97010 * 120.00188 * 179.97438 * 15 14 12 35 35 H 1.07991 * 120.04822 * 180.02562 * 24 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2408 -1.2710 0.0006 5 6 1.5421 -2.4857 0.0017 6 6 2.2287 -3.6657 -0.0036 7 6 3.6220 -3.6633 -0.0045 8 7 4.3165 -4.8662 -0.0092 9 6 3.5895 -6.1322 0.1123 10 1 2.6311 -6.0515 -0.4005 11 6 3.3520 -6.4439 1.5913 12 6 4.4008 -7.2391 -0.5104 13 1 5.3619 -7.0213 -0.9521 14 6 3.9164 -8.5299 -0.5153 15 7 2.7462 -8.7952 0.0231 16 14 4.9222 -9.9021 -1.2865 17 1 6.2279 -10.0116 -0.5877 18 1 4.1852 -11.1854 -1.1634 19 1 5.1529 -9.6000 -2.7221 20 6 4.3205 -2.4581 0.0005 21 7 5.8007 -2.4619 -0.0011 22 8 6.4082 -3.3030 0.6369 23 8 6.4111 -1.6238 -0.6402 24 6 3.6417 -1.2732 0.0057 25 1 -0.3634 -0.5139 0.8900 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 0.4621 -2.4883 0.0017 29 1 1.6911 -4.6024 -0.0074 30 1 5.2829 -4.8679 -0.0931 31 1 4.3105 -6.5246 2.1041 32 1 2.7652 -5.6433 2.0416 33 1 2.8115 -7.3862 1.6817 34 1 2.4051 -9.7033 0.0193 35 1 4.1840 -0.3394 0.0092 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299585667.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:37 Heat of formation + Delta-G solvation = -20.615192 kcal Electronic energy + Delta-G solvation = -21313.144846 eV Core-core repulsion = 17893.373557 eV Total energy + Delta-G solvation = -3419.771289 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.93950 -40.02661 -38.65402 -36.45620 -35.89121 -33.31521 -32.23054 -30.76713 -29.88285 -28.16116 -25.97238 -25.48785 -23.42075 -22.70329 -20.76706 -20.17396 -18.53913 -18.42449 -17.69898 -16.95988 -16.59952 -15.88690 -15.66967 -15.09631 -15.03999 -14.48385 -14.15793 -13.79584 -13.37670 -12.96008 -12.74581 -12.58896 -12.37166 -12.10501 -11.71329 -11.43094 -11.29755 -11.21715 -11.02229 -10.84485 -10.80544 -10.56238 -10.42465 -9.98772 -9.82547 -9.55337 -9.38447 -8.75393 -7.43813 -6.41427 -4.51325 0.39732 0.75519 1.48929 1.74946 2.37844 3.13203 3.18169 3.20648 3.60459 3.63436 4.03809 4.17202 4.52040 4.75229 4.92714 4.96984 5.06911 5.10740 5.24518 5.27795 5.62073 5.67420 5.89122 6.05537 6.12921 6.32252 6.42784 6.56875 6.61517 6.71491 6.93505 7.35625 7.43284 7.51272 7.56419 7.77830 7.93864 8.07577 8.52147 9.17317 10.64626 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.004886 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.192782 B = 5729.267055 C = 6717.874744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.405 3.595 3 O -0.475 6.475 4 C -0.262 4.262 5 C 0.014 3.986 6 C -0.208 4.208 7 C 0.318 3.682 8 N -0.669 5.669 9 C 0.254 3.746 10 H 0.052 0.948 11 C -0.154 4.154 12 C -0.541 4.541 13 H 0.064 0.936 14 C 0.072 3.928 15 N -0.884 5.884 16 Si 0.907 3.093 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.275 1.275 20 C -0.156 4.156 21 N 0.044 4.956 22 O -0.179 6.179 23 O -0.168 6.168 24 C 0.052 3.948 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.142 0.858 29 H 0.156 0.844 30 H 0.407 0.593 31 H 0.037 0.963 32 H 0.016 0.984 33 H 0.099 0.901 34 H 0.269 0.731 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.319 9.780 0.655 11.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.286 3.714 3 O -0.353 6.353 4 C -0.267 4.267 5 C -0.006 4.006 6 C -0.230 4.230 7 C 0.193 3.807 8 N -0.285 5.285 9 C 0.153 3.847 10 H 0.070 0.930 11 C -0.212 4.212 12 C -0.579 4.579 13 H 0.082 0.918 14 C -0.132 4.132 15 N -0.521 5.521 16 Si 0.734 3.266 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.200 1.200 20 C -0.246 4.246 21 N 0.559 4.441 22 O -0.388 6.388 23 O -0.384 6.384 24 C 0.033 3.967 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.160 0.840 29 H 0.173 0.827 30 H 0.246 0.754 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.851 9.809 0.731 11.987 hybrid contribution 1.284 -0.946 -0.395 1.643 sum -5.567 8.863 0.336 10.472 Atomic orbital electron populations 1.22227 0.93808 1.04937 1.04564 1.22110 0.91444 0.87154 0.70705 1.90543 1.72166 1.34326 1.38253 1.19868 0.92302 0.95379 1.19141 1.21159 1.00329 0.90530 0.88579 1.20659 0.90535 1.00444 1.11385 1.17983 0.92381 0.84852 0.85437 1.46552 1.11219 1.04411 1.66333 1.19213 0.93193 0.77852 0.94447 0.93037 1.22201 1.00398 1.02249 0.96353 1.21060 1.05356 0.92117 1.39399 0.91785 1.24835 0.95118 0.98569 0.94684 1.69828 1.17698 1.21275 1.43283 0.86401 0.80088 0.80346 0.79808 1.19815 1.20879 1.19987 1.20016 0.78598 0.95675 1.30290 1.43450 1.03507 0.99320 0.97862 1.94499 1.69667 1.33017 1.41641 1.94501 1.69329 1.33448 1.41087 1.20507 0.93865 0.96015 0.86343 0.88835 0.89900 0.88815 0.84014 0.82657 0.75367 0.94347 0.96466 0.88297 0.92121 0.83552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.48 8.92 36.01 0.32 -1.16 16 2 C 0.41 4.85 7.21 -30.87 -0.22 4.63 16 3 O -0.48 -7.33 17.07 5.54 0.09 -7.24 16 4 C -0.26 -3.39 5.87 -105.05 -0.62 -4.00 16 5 C 0.01 0.16 9.42 -39.49 -0.37 -0.21 16 6 C -0.21 -3.03 9.15 -39.79 -0.36 -3.39 16 7 C 0.32 5.53 6.59 -83.86 -0.55 4.98 16 8 N -0.67 -13.18 4.99 -53.28 -0.27 -13.45 16 9 C 0.25 5.54 2.35 -69.08 -0.16 5.37 16 10 H 0.05 1.16 6.23 -51.93 -0.32 0.83 16 11 C -0.15 -3.26 9.27 37.16 0.34 -2.92 16 12 C -0.54 -13.32 8.73 -34.44 -0.30 -13.62 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 14 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 15 N -0.88 -22.23 11.32 55.43 0.63 -21.61 16 16 Si 0.91 19.57 29.54 -169.99 -5.02 14.55 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 C -0.16 -2.67 6.47 -80.16 -0.52 -3.19 16 21 N 0.04 0.82 4.28 33.86 0.14 0.96 16 22 O -0.18 -3.53 16.73 -29.46 -0.49 -4.03 16 23 O -0.17 -3.16 18.92 -29.46 -0.56 -3.72 16 24 C 0.05 0.80 9.15 -39.49 -0.36 0.44 16 25 H 0.09 0.53 8.08 -51.93 -0.42 0.11 16 26 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 27 H 0.09 0.54 8.08 -51.93 -0.42 0.12 16 28 H 0.14 1.06 7.03 -52.49 -0.37 0.69 16 29 H 0.16 2.28 6.10 -52.48 -0.32 1.96 16 30 H 0.41 8.30 6.10 -40.82 -0.25 8.06 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 33 H 0.10 2.29 6.07 -51.93 -0.32 1.97 16 34 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 35 H 0.15 2.21 7.57 -52.49 -0.40 1.81 16 LS Contribution 308.29 15.07 4.65 4.65 Total: -1.00 -27.27 308.29 -7.34 -34.61 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -3.62 Total: 6.65 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -2.90 Total: -11.39 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.51 Total: -34.09 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.96 Total: -14.98 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.27 -7.34 -34.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299585667.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.998 kcal (2) G-P(sol) polarization free energy of solvation -27.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds