Wall clock time and date at job start Tue Mar 31 2020 01:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21302 * 119.99945 * 2 1 4 4 C 1.46760 * 119.99941 * 179.97438 * 2 1 3 5 5 C 1.40132 * 120.09292 * 359.97438 * 4 2 1 6 6 C 1.36525 * 119.89746 * 179.72174 * 5 4 2 7 7 C 1.39331 * 120.09739 * 0.26164 * 6 5 4 8 8 N 1.38895 * 119.90382 * 179.97438 * 7 6 5 9 9 C 1.46497 * 119.99901 * 354.31632 * 8 7 6 10 10 H 1.08997 * 109.47234 * 35.00072 * 9 8 7 11 11 C 1.52998 * 109.46907 * 274.99896 * 9 8 7 12 12 C 1.50704 * 109.46830 * 154.99993 * 9 8 7 13 13 H 1.07998 * 120.00104 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99691 * 179.97438 * 12 9 8 15 15 N 1.31512 * 120.00089 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 119.99956 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.47287 * 60.00410 * 16 14 12 18 18 H 1.48501 * 109.47360 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47184 * 300.00369 * 16 14 12 20 20 C 1.39301 * 120.19271 * 0.02562 * 7 6 5 21 21 N 1.48012 * 119.95122 * 180.02562 * 20 7 6 22 22 O 1.21799 * 119.99823 * 322.47426 * 21 20 7 23 23 O 1.21797 * 120.00002 * 142.47803 * 21 20 7 24 24 C 1.36559 * 120.09589 * 359.97438 * 20 7 6 25 25 H 1.09003 * 109.47266 * 239.99932 * 1 2 3 26 26 H 1.08994 * 109.47418 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47026 * 120.00137 * 1 2 3 28 28 H 1.08001 * 120.04809 * 0.02562 * 5 4 2 29 29 H 1.08004 * 119.95046 * 180.28293 * 6 5 4 30 30 H 0.97006 * 119.99649 * 174.31709 * 8 7 6 31 31 H 1.08997 * 109.47317 * 300.00125 * 11 9 8 32 32 H 1.09001 * 109.46821 * 60.00748 * 11 9 8 33 33 H 1.09005 * 109.46537 * 180.02562 * 11 9 8 34 34 H 0.97010 * 120.00188 * 179.97438 * 15 14 12 35 35 H 1.07991 * 120.04822 * 180.02562 * 24 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2408 -1.2710 0.0006 5 6 1.5421 -2.4857 0.0017 6 6 2.2287 -3.6657 -0.0036 7 6 3.6220 -3.6633 -0.0045 8 7 4.3165 -4.8662 -0.0092 9 6 3.5895 -6.1322 0.1123 10 1 2.6311 -6.0515 -0.4005 11 6 3.3520 -6.4439 1.5913 12 6 4.4008 -7.2391 -0.5104 13 1 5.3619 -7.0213 -0.9521 14 6 3.9164 -8.5299 -0.5153 15 7 2.7462 -8.7952 0.0231 16 14 4.9222 -9.9021 -1.2865 17 1 6.2279 -10.0116 -0.5877 18 1 4.1852 -11.1854 -1.1634 19 1 5.1529 -9.6000 -2.7221 20 6 4.3205 -2.4581 0.0005 21 7 5.8007 -2.4619 -0.0011 22 8 6.4082 -3.3030 0.6369 23 8 6.4111 -1.6238 -0.6402 24 6 3.6417 -1.2732 0.0057 25 1 -0.3634 -0.5139 0.8900 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 0.4621 -2.4883 0.0017 29 1 1.6911 -4.6024 -0.0074 30 1 5.2829 -4.8679 -0.0931 31 1 4.3105 -6.5246 2.1041 32 1 2.7652 -5.6433 2.0416 33 1 2.8115 -7.3862 1.6817 34 1 2.4051 -9.7033 0.0193 35 1 4.1840 -0.3394 0.0092 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299585667.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:36 Heat of formation + Delta-G solvation = -35.286889 kcal Electronic energy + Delta-G solvation = -21313.781058 eV Core-core repulsion = 17893.373557 eV Total energy + Delta-G solvation = -3420.407501 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.36763 -41.19959 -39.83981 -37.89131 -37.38564 -34.94457 -33.50314 -32.02954 -31.02888 -29.46501 -27.48593 -27.11944 -24.70022 -23.96569 -22.25253 -21.46022 -19.88595 -19.85175 -19.03702 -18.44980 -18.01118 -17.20762 -17.03192 -16.47507 -16.00062 -15.86346 -15.46522 -15.12033 -14.69159 -14.37591 -14.07419 -13.76084 -13.36436 -13.12454 -12.98632 -12.90058 -12.81976 -12.79848 -12.67094 -12.40888 -12.34923 -12.22972 -12.04763 -11.42104 -11.15471 -10.82727 -10.71679 -10.59325 -8.81478 -8.28057 -6.42736 -0.99338 -0.37725 0.19511 0.38831 1.32849 1.40790 1.42789 1.49331 2.17362 2.42171 2.48857 3.03576 3.06896 3.27241 3.77612 3.86625 3.93247 4.11065 4.43994 4.50636 4.60465 4.79064 4.79608 4.87279 4.91163 4.93993 5.03382 5.14932 5.23785 5.34560 5.44289 5.54765 5.72740 5.89934 6.10079 6.39504 6.48147 6.57980 6.68061 7.28003 8.76685 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.004886 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.192782 B = 5729.267055 C = 6717.874744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.408 3.592 3 O -0.514 6.514 4 C -0.248 4.248 5 C 0.046 3.954 6 C -0.214 4.214 7 C 0.300 3.700 8 N -0.688 5.688 9 C 0.264 3.736 10 H 0.047 0.953 11 C -0.142 4.142 12 C -0.561 4.561 13 H 0.051 0.949 14 C 0.035 3.965 15 N -0.900 5.900 16 Si 0.958 3.042 17 H -0.276 1.276 18 H -0.276 1.276 19 H -0.275 1.275 20 C -0.164 4.164 21 N 0.044 4.956 22 O -0.210 6.210 23 O -0.171 6.171 24 C 0.038 3.962 25 H 0.122 0.878 26 H 0.085 0.915 27 H 0.122 0.878 28 H 0.198 0.802 29 H 0.158 0.842 30 H 0.399 0.601 31 H 0.024 0.976 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.270 0.730 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.110 10.609 0.466 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.291 3.709 3 O -0.394 6.394 4 C -0.253 4.253 5 C 0.027 3.973 6 C -0.236 4.236 7 C 0.179 3.821 8 N -0.307 5.307 9 C 0.162 3.838 10 H 0.064 0.936 11 C -0.200 4.200 12 C -0.599 4.599 13 H 0.070 0.930 14 C -0.167 4.167 15 N -0.537 5.537 16 Si 0.783 3.217 17 H -0.201 1.201 18 H -0.201 1.201 19 H -0.200 1.200 20 C -0.254 4.254 21 N 0.555 4.445 22 O -0.413 6.413 23 O -0.388 6.388 24 C 0.018 3.982 25 H 0.140 0.860 26 H 0.104 0.896 27 H 0.140 0.860 28 H 0.215 0.785 29 H 0.176 0.824 30 H 0.237 0.763 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.648 10.643 0.566 14.376 hybrid contribution 2.037 -0.995 -0.360 2.296 sum -7.610 9.648 0.207 12.290 Atomic orbital electron populations 1.22302 0.89272 1.06238 1.07097 1.22778 0.93611 0.85633 0.68914 1.90554 1.73448 1.35443 1.39939 1.20313 0.91323 0.97058 1.16557 1.21663 1.02741 0.88252 0.84636 1.20857 0.89215 1.01882 1.11694 1.18308 0.93537 0.83918 0.86304 1.46236 1.10640 1.04533 1.69243 1.18892 0.92544 0.78192 0.94147 0.93555 1.22027 0.99663 1.01980 0.96349 1.21352 1.05335 0.93516 1.39729 0.93039 1.25441 0.95996 1.00190 0.95121 1.69899 1.18421 1.21640 1.43785 0.85608 0.78784 0.78400 0.78870 1.20115 1.20130 1.20028 1.20178 0.77251 0.96467 1.31477 1.43747 1.04434 0.98883 0.97418 1.94492 1.70444 1.33691 1.42675 1.94467 1.70049 1.33397 1.40928 1.20675 0.95243 0.95078 0.87200 0.85997 0.89556 0.86024 0.78466 0.82433 0.76327 0.95673 0.94292 0.90179 0.92008 0.83967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 8.92 71.24 0.64 -1.14 16 2 C 0.41 8.25 7.21 27.92 0.20 8.45 16 3 O -0.51 -14.83 17.07 -3.10 -0.05 -14.88 16 4 C -0.25 -5.59 5.87 -20.14 -0.12 -5.71 16 5 C 0.05 0.85 9.42 22.33 0.21 1.06 16 6 C -0.21 -5.69 9.15 22.13 0.20 -5.49 16 7 C 0.30 10.31 6.59 38.54 0.25 10.56 16 8 N -0.69 -27.73 4.99 -322.49 -1.61 -29.34 16 9 C 0.26 11.66 2.35 44.25 0.10 11.76 16 10 H 0.05 2.08 6.23 -2.39 -0.01 2.06 16 11 C -0.14 -6.05 9.27 71.98 0.67 -5.38 16 12 C -0.56 -28.18 8.73 25.60 0.22 -27.96 16 13 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 14 C 0.03 1.73 5.30 84.65 0.45 2.18 16 15 N -0.90 -45.28 11.32 21.45 0.24 -45.04 16 16 Si 0.96 40.29 29.54 68.60 2.03 42.31 16 17 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 18 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 20 C -0.16 -5.63 6.47 36.24 0.23 -5.39 16 21 N 0.04 1.72 4.28 -46.79 -0.20 1.52 16 22 O -0.21 -8.70 16.73 18.89 0.32 -8.38 16 23 O -0.17 -6.63 18.92 18.89 0.36 -6.27 16 24 C 0.04 1.11 9.15 22.33 0.20 1.32 16 25 H 0.12 0.54 8.08 -2.39 -0.02 0.52 16 26 H 0.09 0.83 8.12 -2.39 -0.02 0.81 16 27 H 0.12 0.55 8.08 -2.38 -0.02 0.53 16 28 H 0.20 1.47 7.03 -2.91 -0.02 1.45 16 29 H 0.16 4.23 6.10 -2.91 -0.02 4.21 16 30 H 0.40 17.08 6.10 -92.70 -0.57 16.51 16 31 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 1.43 8.12 -2.39 -0.02 1.42 16 33 H 0.08 3.73 6.07 -2.38 -0.01 3.71 16 34 H 0.27 12.97 8.31 -92.70 -0.77 12.20 16 35 H 0.14 4.29 7.57 -2.92 -0.02 4.26 16 Total: -1.00 -61.58 308.29 4.92 -56.66 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.58 Total: 19.16 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 3.27 Total: -15.74 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.57 Total: -72.86 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: 0.62 Total: -29.53 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.31 kcal Total: -61.58 4.92 -56.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299585667.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.372 kcal (2) G-P(sol) polarization free energy of solvation -61.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds