Wall clock time and date at job start Tue Mar 31 2020 01:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21310 * 119.99950 * 2 1 4 4 C 1.46751 * 120.00071 * 180.02562 * 2 1 3 5 5 C 1.40127 * 120.09656 * 5.30684 * 4 2 1 6 6 C 1.36528 * 119.90202 * 179.74627 * 5 4 2 7 7 C 1.39326 * 120.09855 * 0.27636 * 6 5 4 8 8 N 1.38895 * 119.90753 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99332 * 354.13668 * 8 7 6 10 10 H 1.09004 * 109.47412 * 324.99170 * 9 8 7 11 11 C 1.53000 * 109.47576 * 84.99938 * 9 8 7 12 12 C 1.50704 * 109.46489 * 204.99883 * 9 8 7 13 13 H 1.07997 * 120.00461 * 359.97438 * 12 9 8 14 14 C 1.37885 * 119.99916 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99843 * 180.02562 * 14 12 9 16 16 Si 1.86804 * 119.99895 * 359.97438 * 14 12 9 17 17 H 1.48497 * 109.47144 * 90.00261 * 16 14 12 18 18 H 1.48499 * 109.46854 * 210.00528 * 16 14 12 19 19 H 1.48503 * 109.47142 * 330.00457 * 16 14 12 20 20 C 1.39294 * 120.19218 * 359.95243 * 7 6 5 21 21 N 1.48013 * 119.95560 * 180.02562 * 20 7 6 22 22 O 1.21798 * 120.00159 * 186.14853 * 21 20 7 23 23 O 1.21803 * 119.99904 * 6.14565 * 21 20 7 24 24 C 1.36558 * 120.09729 * 0.02562 * 20 7 6 25 25 H 1.08997 * 109.46732 * 174.94870 * 1 2 3 26 26 H 1.09003 * 109.46776 * 294.94721 * 1 2 3 27 27 H 1.08996 * 109.47127 * 54.94733 * 1 2 3 28 28 H 1.08001 * 120.04416 * 0.02562 * 5 4 2 29 29 H 1.08003 * 119.94904 * 180.24842 * 6 5 4 30 30 H 0.97000 * 120.00196 * 174.12762 * 8 7 6 31 31 H 1.08998 * 109.46981 * 59.99374 * 11 9 8 32 32 H 1.08993 * 109.47446 * 179.97438 * 11 9 8 33 33 H 1.08996 * 109.46572 * 299.99940 * 11 9 8 34 34 H 0.97004 * 119.99640 * 179.97438 * 15 14 12 35 35 H 1.08001 * 120.05476 * 179.97438 * 24 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2408 -1.2709 -0.0006 5 6 1.5467 -2.4830 -0.1132 6 6 2.2338 -3.6628 -0.1186 7 6 3.6225 -3.6631 -0.0064 8 7 4.3174 -4.8657 -0.0117 9 6 3.5853 -6.1346 -0.0055 10 1 2.6794 -6.0285 0.5914 11 6 3.2099 -6.5139 -1.4394 12 6 4.4546 -7.2130 0.5883 13 1 5.4526 -6.9769 0.9267 14 6 3.9761 -8.5014 0.6985 15 7 4.7345 -9.4424 1.2171 16 14 2.2501 -8.9101 0.1125 17 1 2.2948 -9.3138 -1.3158 18 1 1.7026 -10.0257 0.9254 19 1 1.3807 -7.7155 0.2622 20 6 4.3161 -2.4608 0.1106 21 7 5.7915 -2.4672 0.2289 22 8 6.3898 -1.4282 0.4434 23 8 6.4073 -3.5116 0.1118 24 6 3.6369 -1.2761 0.1164 25 1 -0.3633 -1.0237 -0.0905 26 1 -0.3633 0.4335 0.9318 27 1 -0.3633 0.5902 -0.8412 28 1 0.4702 -2.4836 -0.2003 29 1 1.6999 -4.5972 -0.2094 30 1 5.2874 -4.8653 -0.0197 31 1 4.1158 -6.6200 -2.0362 32 1 2.6656 -7.4582 -1.4348 33 1 2.5813 -5.7339 -1.8687 34 1 4.3977 -10.3488 1.2950 35 1 4.1754 -0.3444 0.2075 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299585671.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:39 Heat of formation + Delta-G solvation = -2.911543 kcal Electronic energy + Delta-G solvation = -21424.143531 eV Core-core repulsion = 18005.139930 eV Total energy + Delta-G solvation = -3419.003601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.01978 -40.13226 -38.77261 -36.71301 -35.95298 -33.26284 -32.36088 -31.03237 -30.32829 -28.56814 -26.02311 -25.41484 -23.55300 -22.90931 -20.73834 -20.39887 -18.53569 -18.43195 -17.65246 -17.28079 -16.69091 -16.21682 -15.89598 -15.25177 -15.10854 -14.66510 -14.25661 -13.77316 -13.61726 -13.25336 -13.10002 -12.68961 -12.48751 -12.40091 -12.14749 -11.76929 -11.62641 -11.26381 -11.05967 -10.93377 -10.79490 -10.43678 -10.21846 -9.90495 -9.87308 -9.69757 -9.51768 -8.91394 -7.59546 -6.40857 -4.46947 0.20216 0.65996 1.54603 1.68981 2.29857 3.01453 3.06015 3.15268 3.49339 3.53789 3.93792 4.06552 4.39209 4.57877 4.81579 4.89436 4.92838 4.99647 5.19025 5.22680 5.53606 5.56835 5.74610 5.80315 5.94819 5.97088 6.04106 6.10674 6.23710 6.34353 6.65889 6.81659 7.08982 7.27435 7.43541 7.80452 8.05359 8.16738 8.60947 9.14232 10.71180 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019478 B = 0.005459 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.176678 B = 5127.907005 C = 6346.743375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.406 3.594 3 O -0.473 6.473 4 C -0.262 4.262 5 C 0.017 3.983 6 C -0.216 4.216 7 C 0.318 3.682 8 N -0.653 5.653 9 C 0.223 3.777 10 H 0.049 0.951 11 C -0.171 4.171 12 C -0.543 4.543 13 H 0.086 0.914 14 C 0.082 3.918 15 N -0.881 5.881 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.290 1.290 19 H -0.266 1.266 20 C -0.156 4.156 21 N 0.056 4.944 22 O -0.172 6.172 23 O -0.196 6.196 24 C 0.059 3.941 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.145 0.855 29 H 0.152 0.848 30 H 0.423 0.577 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.271 0.729 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.766 12.300 -3.792 16.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.286 3.714 3 O -0.351 6.351 4 C -0.267 4.267 5 C -0.003 4.003 6 C -0.238 4.238 7 C 0.192 3.808 8 N -0.278 5.278 9 C 0.120 3.880 10 H 0.066 0.934 11 C -0.229 4.229 12 C -0.581 4.581 13 H 0.104 0.896 14 C -0.124 4.124 15 N -0.517 5.517 16 Si 0.717 3.283 17 H -0.200 1.200 18 H -0.217 1.217 19 H -0.191 1.191 20 C -0.248 4.248 21 N 0.563 4.437 22 O -0.386 6.386 23 O -0.395 6.395 24 C 0.039 3.961 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.163 0.837 29 H 0.169 0.831 30 H 0.272 0.728 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.001 12.256 -3.786 16.899 hybrid contribution -0.134 -0.636 -0.262 0.700 sum -11.135 11.621 -4.047 16.596 Atomic orbital electron populations 1.22216 0.93865 1.04712 1.04856 1.22086 0.91413 0.87165 0.70742 1.90556 1.72013 1.34300 1.38189 1.19922 0.92556 0.95481 1.18725 1.21265 1.00308 0.90589 0.88171 1.20627 0.90773 1.00287 1.12143 1.18078 0.92346 0.85158 0.85242 1.46935 1.12558 1.03104 1.65233 1.19548 0.93967 0.80953 0.93526 0.93353 1.22609 1.01251 0.99952 0.99058 1.20915 1.02589 0.91908 1.42648 0.89600 1.24844 0.97540 0.95751 0.94216 1.69854 1.36691 1.02228 1.42903 0.86868 0.84570 0.78362 0.78510 1.20018 1.21735 1.19122 1.20071 0.79176 0.95627 1.29945 1.43393 1.03234 1.00099 0.96996 1.94494 1.69828 1.21863 1.52378 1.94232 1.67886 1.20669 1.56727 1.20657 0.93650 0.96604 0.85176 0.89835 0.88722 0.88996 0.83748 0.83070 0.72779 0.91855 0.92593 0.94317 0.91903 0.82769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.35 10.19 36.01 0.37 -0.98 16 2 C 0.41 4.52 7.20 -30.87 -0.22 4.30 16 3 O -0.47 -6.93 17.09 5.53 0.09 -6.84 16 4 C -0.26 -3.15 5.87 -105.05 -0.62 -3.76 16 5 C 0.02 0.17 9.39 -39.49 -0.37 -0.20 16 6 C -0.22 -2.87 8.60 -39.79 -0.34 -3.21 16 7 C 0.32 5.23 6.61 -83.86 -0.55 4.68 16 8 N -0.65 -12.43 5.09 -53.28 -0.27 -12.70 16 9 C 0.22 4.58 1.82 -69.08 -0.13 4.46 16 10 H 0.05 0.97 5.79 -51.93 -0.30 0.67 16 11 C -0.17 -3.18 8.79 37.16 0.33 -2.85 16 12 C -0.54 -13.80 9.31 -34.44 -0.32 -14.12 16 13 H 0.09 2.43 7.98 -52.49 -0.42 2.01 16 14 C 0.08 2.13 5.45 -17.82 -0.10 2.03 16 15 N -0.88 -24.84 13.96 55.43 0.77 -24.07 16 16 Si 0.89 19.19 24.37 -169.99 -4.14 15.05 16 17 H -0.27 -5.76 6.87 56.52 0.39 -5.37 16 18 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 19 H -0.27 -5.25 6.53 56.52 0.37 -4.88 16 20 C -0.16 -2.57 6.82 -80.16 -0.55 -3.12 16 21 N 0.06 1.02 4.45 33.86 0.15 1.18 16 22 O -0.17 -3.16 18.43 -29.46 -0.54 -3.70 16 23 O -0.20 -3.89 15.70 -29.46 -0.46 -4.35 16 24 C 0.06 0.84 9.05 -39.49 -0.36 0.49 16 25 H 0.08 0.39 5.61 -51.93 -0.29 0.10 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.15 0.92 5.93 -52.49 -0.31 0.60 16 29 H 0.15 1.93 5.80 -52.48 -0.30 1.63 16 30 H 0.42 8.53 4.94 -41.33 -0.20 8.33 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.08 3.27 -51.93 -0.17 0.91 16 33 H 0.04 0.60 7.17 -51.93 -0.37 0.22 16 34 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.15 2.20 7.18 -52.49 -0.38 1.82 16 LS Contribution 295.13 15.07 4.45 4.45 Total: -1.00 -29.39 295.13 -6.01 -35.40 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -3.20 Total: 7.87 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -2.86 Total: -12.28 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.65 Total: -35.59 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.91 Total: -14.89 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.14 Total: 15.05 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.39 -6.01 -35.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299585671.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.491 kcal (2) G-P(sol) polarization free energy of solvation -29.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds