Wall clock time and date at job start Tue Mar 31 2020 01:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21310 * 119.99950 * 2 1 4 4 C 1.46751 * 120.00071 * 180.02562 * 2 1 3 5 5 C 1.40127 * 120.09656 * 5.30684 * 4 2 1 6 6 C 1.36528 * 119.90202 * 179.74627 * 5 4 2 7 7 C 1.39326 * 120.09855 * 0.27636 * 6 5 4 8 8 N 1.38895 * 119.90753 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99332 * 354.13668 * 8 7 6 10 10 H 1.09004 * 109.47412 * 324.99170 * 9 8 7 11 11 C 1.53000 * 109.47576 * 84.99938 * 9 8 7 12 12 C 1.50704 * 109.46489 * 204.99883 * 9 8 7 13 13 H 1.07997 * 120.00461 * 359.97438 * 12 9 8 14 14 C 1.37885 * 119.99916 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99843 * 180.02562 * 14 12 9 16 16 Si 1.86804 * 119.99895 * 359.97438 * 14 12 9 17 17 H 1.48497 * 109.47144 * 90.00261 * 16 14 12 18 18 H 1.48499 * 109.46854 * 210.00528 * 16 14 12 19 19 H 1.48503 * 109.47142 * 330.00457 * 16 14 12 20 20 C 1.39294 * 120.19218 * 359.95243 * 7 6 5 21 21 N 1.48013 * 119.95560 * 180.02562 * 20 7 6 22 22 O 1.21798 * 120.00159 * 186.14853 * 21 20 7 23 23 O 1.21803 * 119.99904 * 6.14565 * 21 20 7 24 24 C 1.36558 * 120.09729 * 0.02562 * 20 7 6 25 25 H 1.08997 * 109.46732 * 174.94870 * 1 2 3 26 26 H 1.09003 * 109.46776 * 294.94721 * 1 2 3 27 27 H 1.08996 * 109.47127 * 54.94733 * 1 2 3 28 28 H 1.08001 * 120.04416 * 0.02562 * 5 4 2 29 29 H 1.08003 * 119.94904 * 180.24842 * 6 5 4 30 30 H 0.97000 * 120.00196 * 174.12762 * 8 7 6 31 31 H 1.08998 * 109.46981 * 59.99374 * 11 9 8 32 32 H 1.08993 * 109.47446 * 179.97438 * 11 9 8 33 33 H 1.08996 * 109.46572 * 299.99940 * 11 9 8 34 34 H 0.97004 * 119.99640 * 179.97438 * 15 14 12 35 35 H 1.08001 * 120.05476 * 179.97438 * 24 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2408 -1.2709 -0.0006 5 6 1.5467 -2.4830 -0.1132 6 6 2.2338 -3.6628 -0.1186 7 6 3.6225 -3.6631 -0.0064 8 7 4.3174 -4.8657 -0.0117 9 6 3.5853 -6.1346 -0.0055 10 1 2.6794 -6.0285 0.5914 11 6 3.2099 -6.5139 -1.4394 12 6 4.4546 -7.2130 0.5883 13 1 5.4526 -6.9769 0.9267 14 6 3.9761 -8.5014 0.6985 15 7 4.7345 -9.4424 1.2171 16 14 2.2501 -8.9101 0.1125 17 1 2.2948 -9.3138 -1.3158 18 1 1.7026 -10.0257 0.9254 19 1 1.3807 -7.7155 0.2622 20 6 4.3161 -2.4608 0.1106 21 7 5.7915 -2.4672 0.2289 22 8 6.3898 -1.4282 0.4434 23 8 6.4073 -3.5116 0.1118 24 6 3.6369 -1.2761 0.1164 25 1 -0.3633 -1.0237 -0.0905 26 1 -0.3633 0.4335 0.9318 27 1 -0.3633 0.5902 -0.8412 28 1 0.4702 -2.4836 -0.2003 29 1 1.6999 -4.5972 -0.2094 30 1 5.2874 -4.8653 -0.0197 31 1 4.1158 -6.6200 -2.0362 32 1 2.6656 -7.4582 -1.4348 33 1 2.5813 -5.7339 -1.8687 34 1 4.3977 -10.3488 1.2950 35 1 4.1754 -0.3444 0.2075 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299585671.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:38 Heat of formation + Delta-G solvation = -22.320866 kcal Electronic energy + Delta-G solvation = -21424.985183 eV Core-core repulsion = 18005.139930 eV Total energy + Delta-G solvation = -3419.845253 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.39213 -41.23033 -39.88856 -38.06778 -37.39757 -34.88240 -33.65328 -32.39534 -31.28885 -29.69083 -27.41207 -27.07009 -24.74537 -24.10274 -22.16903 -21.58375 -19.85575 -19.81100 -18.96369 -18.68441 -18.06141 -17.66365 -17.03653 -16.52357 -15.99674 -15.90963 -15.52231 -15.09538 -14.92174 -14.67505 -14.25335 -14.01950 -13.68216 -13.40681 -13.22301 -12.91724 -12.75741 -12.70794 -12.57105 -12.44183 -12.29245 -11.96482 -11.56212 -11.43906 -11.33517 -10.82869 -10.80544 -10.74594 -8.87796 -8.38523 -6.50607 -1.12707 -0.38497 0.31802 0.39914 1.32047 1.33512 1.37652 1.49595 2.18737 2.27291 2.47215 2.96267 3.03755 3.24135 3.70341 3.84971 3.88377 4.05915 4.26433 4.39341 4.52394 4.56769 4.60788 4.76943 4.79836 4.83384 4.87332 4.99907 5.14004 5.31795 5.34586 5.39591 5.41985 5.77975 6.25380 6.32398 6.51051 6.58407 6.64483 7.15666 8.77974 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019478 B = 0.005459 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.176678 B = 5127.907005 C = 6346.743375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.408 3.592 3 O -0.513 6.513 4 C -0.248 4.248 5 C 0.050 3.950 6 C -0.217 4.217 7 C 0.302 3.698 8 N -0.677 5.677 9 C 0.232 3.768 10 H 0.065 0.935 11 C -0.167 4.167 12 C -0.551 4.551 13 H 0.031 0.969 14 C 0.019 3.981 15 N -0.941 5.941 16 Si 0.955 3.045 17 H -0.261 1.261 18 H -0.298 1.298 19 H -0.222 1.222 20 C -0.165 4.165 21 N 0.056 4.944 22 O -0.175 6.175 23 O -0.243 6.243 24 C 0.043 3.957 25 H 0.115 0.885 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.205 0.795 29 H 0.169 0.831 30 H 0.411 0.589 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.271 0.729 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.291 13.882 -4.986 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.290 3.710 3 O -0.393 6.393 4 C -0.252 4.252 5 C 0.031 3.969 6 C -0.240 4.240 7 C 0.179 3.821 8 N -0.305 5.305 9 C 0.128 3.872 10 H 0.083 0.917 11 C -0.224 4.224 12 C -0.589 4.589 13 H 0.049 0.951 14 C -0.181 4.181 15 N -0.579 5.579 16 Si 0.779 3.221 17 H -0.187 1.187 18 H -0.226 1.226 19 H -0.144 1.144 20 C -0.258 4.258 21 N 0.556 4.444 22 O -0.391 6.391 23 O -0.432 6.432 24 C 0.023 3.977 25 H 0.133 0.867 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.221 0.779 29 H 0.186 0.814 30 H 0.258 0.742 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.514 13.849 -4.996 22.124 hybrid contribution 1.573 -0.871 0.163 1.805 sum -14.941 12.978 -4.833 20.372 Atomic orbital electron populations 1.22286 0.89296 1.07229 1.06108 1.22782 0.93585 0.85706 0.68913 1.90569 1.73325 1.35516 1.39869 1.20389 0.91432 0.97343 1.16086 1.21828 1.02808 0.88210 0.84061 1.20951 0.88972 1.02215 1.11869 1.18454 0.93760 0.83889 0.85977 1.46735 1.12039 1.03597 1.68098 1.19326 0.93157 0.80092 0.94626 0.91710 1.22518 1.01390 1.01141 0.97400 1.21210 1.01297 0.94012 1.42411 0.95083 1.25900 1.02753 0.95283 0.94138 1.70044 1.39570 1.02857 1.45438 0.85790 0.78848 0.79336 0.78139 1.18699 1.22610 1.14440 1.20297 0.77449 0.96764 1.31253 1.43793 1.04434 0.99608 0.96525 1.94447 1.70756 1.21807 1.52049 1.94241 1.68942 1.21028 1.59002 1.20799 0.95124 0.95511 0.86260 0.86681 0.87369 0.87648 0.77871 0.81383 0.74159 0.93308 0.92682 0.90275 0.91967 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.34 10.19 71.24 0.73 -0.62 16 2 C 0.41 7.32 7.20 27.91 0.20 7.52 16 3 O -0.51 -13.83 17.09 -3.12 -0.05 -13.88 16 4 C -0.25 -4.92 5.87 -20.14 -0.12 -5.04 16 5 C 0.05 0.72 9.39 22.33 0.21 0.93 16 6 C -0.22 -4.73 8.60 22.13 0.19 -4.54 16 7 C 0.30 9.50 6.61 38.54 0.25 9.76 16 8 N -0.68 -26.16 5.09 -322.49 -1.64 -27.81 16 9 C 0.23 9.29 1.82 44.25 0.08 9.37 16 10 H 0.07 2.38 5.79 -2.39 -0.01 2.37 16 11 C -0.17 -5.75 8.79 71.98 0.63 -5.11 16 12 C -0.55 -29.23 9.31 25.60 0.24 -28.99 16 13 H 0.03 1.92 7.98 -2.91 -0.02 1.89 16 14 C 0.02 0.99 5.45 84.66 0.46 1.45 16 15 N -0.94 -55.70 13.96 21.45 0.30 -55.40 16 16 Si 0.95 38.21 24.37 68.60 1.67 39.88 16 17 H -0.26 -9.90 6.87 99.48 0.68 -9.22 16 18 H -0.30 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.22 -7.26 6.53 99.48 0.65 -6.61 16 20 C -0.17 -5.42 6.82 36.24 0.25 -5.18 16 21 N 0.06 2.18 4.45 -46.80 -0.21 1.97 16 22 O -0.17 -6.75 18.43 18.89 0.35 -6.40 16 23 O -0.24 -10.48 15.70 18.88 0.30 -10.18 16 24 C 0.04 1.17 9.05 22.33 0.20 1.38 16 25 H 0.11 0.06 5.61 -2.39 -0.01 0.04 16 26 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.20 0.60 5.93 -2.91 -0.02 0.58 16 29 H 0.17 3.19 5.80 -2.91 -0.02 3.18 16 30 H 0.41 17.84 4.94 -100.82 -0.50 17.34 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.90 3.27 -2.39 -0.01 1.89 16 33 H 0.08 2.07 7.17 -2.39 -0.02 2.06 16 34 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 35 H 0.15 4.22 7.18 -2.91 -0.02 4.20 16 Total: -1.00 -72.27 295.13 4.62 -67.65 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.58 Total: 23.23 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 3.33 Total: -19.07 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -1.55 Total: -81.23 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: 0.59 Total: -30.46 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 1.67 Total: 39.88 kcal Total: -72.27 4.62 -67.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299585671.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.331 kcal (2) G-P(sol) polarization free energy of solvation -72.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds