Wall clock time and date at job start Tue Mar 31 2020 01:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34663 * 117.00421 * 2 1 4 4 O 1.21407 * 119.99368 * 359.97438 * 3 2 1 5 5 C 1.48242 * 120.00226 * 179.97438 * 3 2 1 6 6 C 1.39336 * 119.57496 * 179.97438 * 5 3 2 7 7 C 1.38461 * 119.18618 * 180.02562 * 6 5 3 8 8 C 1.39854 * 118.35686 * 0.28023 * 7 6 5 9 9 C 1.48016 * 120.45798 * 179.72322 * 8 7 6 10 10 O 1.21537 * 120.00057 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00481 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00252 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47210 * 34.99832 * 12 11 9 14 14 C 1.52999 * 109.46674 * 274.99546 * 12 11 9 15 15 C 1.50701 * 109.46681 * 154.99892 * 12 11 9 16 16 H 1.07999 * 120.00540 * 359.97438 * 15 12 11 17 17 C 1.37883 * 119.99356 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00140 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99604 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47128 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46813 * 119.99829 * 19 17 15 22 22 H 1.48493 * 109.47009 * 239.99788 * 19 17 15 23 23 C 1.39746 * 119.08313 * 359.45478 * 8 7 6 24 24 N 1.31397 * 120.72294 * 0.55232 * 23 8 7 25 25 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47291 * 300.00564 * 1 2 3 27 27 H 1.09004 * 109.46550 * 60.00281 * 1 2 3 28 28 H 1.08001 * 120.40559 * 0.04596 * 6 5 3 29 29 H 1.08002 * 120.81676 * 179.97438 * 7 6 5 30 30 H 0.97005 * 119.99701 * 359.97438 * 11 9 8 31 31 H 1.09001 * 109.47536 * 300.00087 * 14 12 11 32 32 H 1.09000 * 109.46950 * 60.00680 * 14 12 11 33 33 H 1.08999 * 109.46598 * 180.02562 * 14 12 11 34 34 H 0.96998 * 119.99519 * 180.02562 * 18 17 15 35 35 H 1.08003 * 119.63692 * 180.27878 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1998 0.0000 4 8 1.4021 2.2180 -0.0005 5 6 3.5438 1.2773 0.0006 6 6 4.1672 2.5235 0.0000 7 6 5.5504 2.5865 0.0000 8 6 6.2699 1.3873 -0.0054 9 6 7.7500 1.4005 -0.0118 10 8 8.3484 2.4583 -0.0128 11 7 8.4344 0.2393 -0.0166 12 6 9.8993 0.2524 -0.0223 13 1 10.2575 1.0964 0.5671 14 6 10.4024 0.3850 -1.4611 15 6 10.4154 -1.0318 0.5739 16 1 9.7216 -1.7825 0.9227 17 6 11.7734 -1.2484 0.6742 18 7 12.6182 -0.3346 0.2490 19 14 12.4131 -2.8400 1.4139 20 1 11.2673 -3.6966 1.8119 21 1 13.2400 -3.5556 0.4091 22 1 13.2408 -2.5332 2.6080 23 6 5.5723 0.1765 0.0010 24 7 4.2585 0.1587 0.0011 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 3.5787 3.4291 -0.0001 29 1 6.0608 3.5383 -0.0008 30 1 7.9568 -0.6051 -0.0154 31 1 10.0442 -0.4590 -2.0506 32 1 10.0291 1.3139 -1.8924 33 1 11.4923 0.3943 -1.4655 34 1 13.5735 -0.4872 0.3192 35 1 6.1191 -0.7549 0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299650377.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:09 Heat of formation + Delta-G solvation = -83.037424 kcal Electronic energy + Delta-G solvation = -20505.346251 eV Core-core repulsion = 17082.868131 eV Total energy + Delta-G solvation = -3422.478120 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.10913 -40.06336 -38.55004 -36.75443 -35.02107 -32.86143 -32.73824 -31.76167 -29.10986 -28.08799 -25.49339 -25.25726 -23.81210 -22.19570 -21.12701 -19.77762 -18.64584 -17.95237 -17.50224 -16.69076 -16.42491 -15.98170 -15.19796 -15.12253 -14.72643 -14.53488 -14.15076 -13.92952 -13.47581 -13.22902 -13.16527 -12.75722 -12.49426 -12.34874 -11.80913 -11.16710 -11.10536 -11.07994 -11.03946 -10.86027 -10.39346 -10.31425 -10.14535 -10.03940 -9.48262 -9.31952 -9.13059 -8.64220 -8.10139 -6.19477 -4.29388 0.02609 0.96932 1.99927 2.27684 3.16987 3.20558 3.28654 3.31042 3.70602 3.85480 3.85936 4.29976 4.50432 4.59918 4.68449 4.81423 4.89640 4.91230 5.11261 5.14228 5.23080 5.36947 5.70146 5.89957 5.99029 6.20028 6.73186 6.85508 7.03941 7.20644 7.26164 7.42011 7.58098 7.60076 7.80384 8.05252 8.44881 8.64552 8.87941 9.38193 10.86545 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030402 B = 0.003400 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.773682 B = 8233.439230 C = 8942.835621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.333 6.333 3 C 0.526 3.474 4 O -0.499 6.499 5 C 0.095 3.905 6 C -0.110 4.110 7 C -0.031 4.031 8 C -0.137 4.137 9 C 0.542 3.458 10 O -0.541 6.541 11 N -0.695 5.695 12 C 0.263 3.737 13 H 0.052 0.948 14 C -0.148 4.148 15 C -0.537 4.537 16 H 0.064 0.936 17 C 0.067 3.933 18 N -0.882 5.882 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.127 3.873 24 N -0.437 5.437 25 H 0.105 0.895 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.155 0.845 29 H 0.160 0.840 30 H 0.390 0.610 31 H 0.028 0.972 32 H 0.016 0.984 33 H 0.092 0.908 34 H 0.265 0.735 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.984 0.755 -1.134 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.248 6.248 3 C 0.369 3.631 4 O -0.386 6.386 5 C -0.041 4.041 6 C -0.131 4.131 7 C -0.057 4.057 8 C -0.142 4.142 9 C 0.326 3.674 10 O -0.420 6.420 11 N -0.342 5.342 12 C 0.162 3.838 13 H 0.070 0.930 14 C -0.207 4.207 15 C -0.575 4.575 16 H 0.082 0.918 17 C -0.136 4.136 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.034 4.034 24 N -0.148 5.148 25 H 0.123 0.877 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.173 0.827 29 H 0.178 0.822 30 H 0.223 0.777 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -19.022 1.021 -1.151 19.084 hybrid contribution 0.420 -0.470 0.358 0.725 sum -18.602 0.551 -0.793 18.627 Atomic orbital electron populations 1.23365 0.76001 1.04071 1.02614 1.86691 1.23247 1.31613 1.83201 1.20854 0.87846 0.81788 0.72601 1.90845 1.65877 1.36194 1.45681 1.20106 0.90750 0.90380 1.02887 1.22070 0.95020 0.98260 0.97719 1.21806 0.92528 0.99436 0.91932 1.21751 0.96581 0.95119 1.00749 1.17991 0.85360 0.85448 0.78614 1.90758 1.69690 1.30641 1.50882 1.46566 1.10560 1.06421 1.70695 1.18866 0.72094 0.98509 0.94310 0.92988 1.22095 1.04626 0.96883 0.97100 1.21231 0.92159 1.02363 1.41750 0.91825 1.24888 0.96618 0.97091 0.95043 1.69905 1.02686 1.33705 1.45661 0.86368 0.78958 0.82791 0.78855 1.19634 1.20828 1.20841 1.23135 0.88994 0.97858 0.93396 1.67629 1.08082 1.29708 1.09390 0.87712 0.91711 0.91725 0.82692 0.82238 0.77650 0.95251 0.96521 0.88903 0.92513 0.81011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.33 -3.84 10.38 -40.39 -0.42 -4.26 16 3 C 0.53 6.66 7.95 34.84 0.28 6.93 16 4 O -0.50 -6.77 16.10 -19.19 -0.31 -7.08 16 5 C 0.10 1.23 6.75 -82.95 -0.56 0.67 16 6 C -0.11 -1.28 9.62 -39.09 -0.38 -1.66 16 7 C -0.03 -0.39 9.71 -38.89 -0.38 -0.77 16 8 C -0.14 -2.00 5.90 -104.72 -0.62 -2.62 16 9 C 0.54 10.20 7.75 -12.25 -0.09 10.10 16 10 O -0.54 -12.10 16.07 5.33 0.09 -12.01 16 11 N -0.69 -13.53 5.02 -55.82 -0.28 -13.81 16 12 C 0.26 6.38 2.56 -69.08 -0.18 6.21 16 13 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 14 C -0.15 -3.54 9.26 37.16 0.34 -3.19 16 15 C -0.54 -13.63 8.73 -34.44 -0.30 -13.93 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 18 N -0.88 -24.12 11.32 55.43 0.63 -23.49 16 19 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 C 0.13 1.67 10.71 -17.17 -0.18 1.49 16 24 N -0.44 -5.94 10.10 -9.49 -0.10 -6.03 16 25 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.16 1.49 7.63 -52.49 -0.40 1.09 16 29 H 0.16 1.91 7.73 -52.49 -0.41 1.50 16 30 H 0.39 6.38 6.60 -40.82 -0.27 6.11 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.17 1.90 6.41 -52.48 -0.34 1.56 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -31.05 313.40 -5.56 -36.60 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -3.77 Total: 4.13 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -1.09 Total: 6.20 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.25 Total: -43.33 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.64 Total: -23.35 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.05 -5.56 -36.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299650377.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.434 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds