Wall clock time and date at job start Tue Mar 31 2020 01:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34663 * 117.00421 * 2 1 4 4 O 1.21407 * 119.99368 * 359.97438 * 3 2 1 5 5 C 1.48242 * 120.00226 * 179.97438 * 3 2 1 6 6 C 1.39336 * 119.57496 * 179.97438 * 5 3 2 7 7 C 1.38461 * 119.18618 * 180.02562 * 6 5 3 8 8 C 1.39854 * 118.35686 * 0.28023 * 7 6 5 9 9 C 1.48016 * 120.45798 * 179.72322 * 8 7 6 10 10 O 1.21537 * 120.00057 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00481 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00252 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47210 * 34.99832 * 12 11 9 14 14 C 1.52999 * 109.46674 * 274.99546 * 12 11 9 15 15 C 1.50701 * 109.46681 * 154.99892 * 12 11 9 16 16 H 1.07999 * 120.00540 * 359.97438 * 15 12 11 17 17 C 1.37883 * 119.99356 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00140 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99604 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47128 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46813 * 119.99829 * 19 17 15 22 22 H 1.48493 * 109.47009 * 239.99788 * 19 17 15 23 23 C 1.39746 * 119.08313 * 359.45478 * 8 7 6 24 24 N 1.31397 * 120.72294 * 0.55232 * 23 8 7 25 25 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47291 * 300.00564 * 1 2 3 27 27 H 1.09004 * 109.46550 * 60.00281 * 1 2 3 28 28 H 1.08001 * 120.40559 * 0.04596 * 6 5 3 29 29 H 1.08002 * 120.81676 * 179.97438 * 7 6 5 30 30 H 0.97005 * 119.99701 * 359.97438 * 11 9 8 31 31 H 1.09001 * 109.47536 * 300.00087 * 14 12 11 32 32 H 1.09000 * 109.46950 * 60.00680 * 14 12 11 33 33 H 1.08999 * 109.46598 * 180.02562 * 14 12 11 34 34 H 0.96998 * 119.99519 * 180.02562 * 18 17 15 35 35 H 1.08003 * 119.63692 * 180.27878 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1998 0.0000 4 8 1.4021 2.2180 -0.0005 5 6 3.5438 1.2773 0.0006 6 6 4.1672 2.5235 0.0000 7 6 5.5504 2.5865 0.0000 8 6 6.2699 1.3873 -0.0054 9 6 7.7500 1.4005 -0.0118 10 8 8.3484 2.4583 -0.0128 11 7 8.4344 0.2393 -0.0166 12 6 9.8993 0.2524 -0.0223 13 1 10.2575 1.0964 0.5671 14 6 10.4024 0.3850 -1.4611 15 6 10.4154 -1.0318 0.5739 16 1 9.7216 -1.7825 0.9227 17 6 11.7734 -1.2484 0.6742 18 7 12.6182 -0.3346 0.2490 19 14 12.4131 -2.8400 1.4139 20 1 11.2673 -3.6966 1.8119 21 1 13.2400 -3.5556 0.4091 22 1 13.2408 -2.5332 2.6080 23 6 5.5723 0.1765 0.0010 24 7 4.2585 0.1587 0.0011 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 3.5787 3.4291 -0.0001 29 1 6.0608 3.5383 -0.0008 30 1 7.9568 -0.6051 -0.0154 31 1 10.0442 -0.4590 -2.0506 32 1 10.0291 1.3139 -1.8924 33 1 11.4923 0.3943 -1.4655 34 1 13.5735 -0.4872 0.3192 35 1 6.1191 -0.7549 0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299650377.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:07 Heat of formation + Delta-G solvation = -103.865827 kcal Electronic energy + Delta-G solvation = -20506.249438 eV Core-core repulsion = 17082.868131 eV Total energy + Delta-G solvation = -3423.381307 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.13351 -41.17898 -39.95509 -37.66200 -36.81700 -34.52209 -33.89389 -33.02561 -30.78927 -28.89944 -27.33968 -26.49514 -24.84562 -23.55109 -22.44674 -21.38895 -19.79033 -19.27361 -18.49977 -17.80819 -17.56380 -17.53848 -16.84691 -16.25341 -16.12367 -15.88151 -15.37731 -15.05281 -14.73522 -14.46509 -14.27697 -14.11836 -13.87013 -13.65932 -13.02256 -12.99392 -12.88333 -12.74494 -12.27077 -12.11164 -12.06082 -11.84906 -11.31315 -11.20078 -11.08085 -10.72549 -10.59533 -10.55604 -9.83716 -8.16969 -6.34055 -1.04879 -0.02826 0.96514 1.42585 1.46733 1.48604 1.59904 1.89525 2.22919 2.48439 2.66257 2.87654 3.14518 3.52257 3.58779 3.70698 3.81343 3.87711 4.27648 4.34957 4.44972 4.64660 4.73502 4.78133 4.87250 4.93508 5.09065 5.12148 5.19461 5.41136 5.56306 5.67500 5.87371 6.09263 6.24427 6.60626 6.72062 6.81268 7.26668 7.42376 8.89527 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030402 B = 0.003400 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.773682 B = 8233.439230 C = 8942.835621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.343 6.343 3 C 0.528 3.472 4 O -0.511 6.511 5 C 0.092 3.908 6 C -0.099 4.099 7 C -0.023 4.023 8 C -0.150 4.150 9 C 0.546 3.454 10 O -0.583 6.583 11 N -0.691 5.691 12 C 0.270 3.730 13 H 0.005 0.995 14 C -0.137 4.137 15 C -0.547 4.547 16 H 0.077 0.923 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.971 3.029 20 H -0.258 1.258 21 H -0.280 1.280 22 H -0.286 1.286 23 C 0.138 3.862 24 N -0.447 5.447 25 H 0.132 0.868 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.178 0.822 29 H 0.166 0.834 30 H 0.407 0.593 31 H 0.043 0.957 32 H 0.015 0.985 33 H 0.068 0.932 34 H 0.265 0.735 35 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.005 -0.634 -0.933 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.258 6.258 3 C 0.371 3.629 4 O -0.399 6.399 5 C -0.044 4.044 6 C -0.119 4.119 7 C -0.050 4.050 8 C -0.156 4.156 9 C 0.332 3.668 10 O -0.464 6.464 11 N -0.340 5.340 12 C 0.167 3.833 13 H 0.023 0.977 14 C -0.195 4.195 15 C -0.585 4.585 16 H 0.095 0.905 17 C -0.184 4.184 18 N -0.555 5.555 19 Si 0.796 3.204 20 H -0.182 1.182 21 H -0.206 1.206 22 H -0.212 1.212 23 C -0.023 4.023 24 N -0.158 5.158 25 H 0.151 0.849 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.196 0.804 29 H 0.184 0.816 30 H 0.243 0.757 31 H 0.062 0.938 32 H 0.034 0.966 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -21.099 -0.401 -0.952 21.124 hybrid contribution 0.914 0.004 0.292 0.960 sum -20.185 -0.397 -0.660 20.199 Atomic orbital electron populations 1.23707 0.73780 1.06144 1.03097 1.86672 1.25472 1.30952 1.82710 1.20779 0.87678 0.82025 0.72392 1.90838 1.66084 1.36612 1.46394 1.20394 0.91240 0.90715 1.02034 1.22223 0.94359 0.98780 0.96510 1.21929 0.93040 0.99126 0.90868 1.21350 0.93675 0.96718 1.03820 1.18474 0.87045 0.84342 0.76968 1.90734 1.71100 1.32000 1.52603 1.46250 1.08881 1.07769 1.71105 1.18449 0.74741 0.96525 0.93584 0.97671 1.21926 1.02996 0.97359 0.97254 1.21580 0.92643 1.02759 1.41505 0.90470 1.25767 0.96998 1.00239 0.95439 1.70049 1.02927 1.35678 1.46845 0.85308 0.78478 0.78926 0.77699 1.18197 1.20591 1.21166 1.23325 0.88926 0.97890 0.92203 1.67689 1.07976 1.30076 1.10055 0.84941 0.91254 0.91239 0.80435 0.81642 0.75658 0.93833 0.96616 0.91331 0.92539 0.79214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.34 -7.20 10.38 -55.72 -0.58 -7.78 16 3 C 0.53 12.29 7.95 70.48 0.56 12.85 16 4 O -0.51 -12.83 16.10 20.14 0.32 -12.50 16 5 C 0.09 2.19 6.75 41.93 0.28 2.48 16 6 C -0.10 -2.08 9.62 22.59 0.22 -1.86 16 7 C -0.02 -0.56 9.71 22.71 0.22 -0.34 16 8 C -0.15 -4.23 5.90 -19.93 -0.12 -4.35 16 9 C 0.55 20.55 7.75 86.84 0.67 21.22 16 10 O -0.58 -26.73 16.07 -3.83 -0.06 -26.79 16 11 N -0.69 -26.77 5.02 -448.80 -2.25 -29.03 16 12 C 0.27 13.33 2.56 44.24 0.11 13.44 16 13 H 0.01 0.31 7.58 -2.39 -0.02 0.30 16 14 C -0.14 -6.62 9.26 71.98 0.67 -5.96 16 15 C -0.55 -27.63 8.73 25.60 0.22 -27.41 16 16 H 0.08 3.60 7.74 -2.91 -0.02 3.58 16 17 C 0.02 0.82 5.30 84.66 0.45 1.27 16 18 N -0.92 -51.09 11.32 21.45 0.24 -50.84 16 19 Si 0.97 40.71 29.54 68.60 2.03 42.74 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 23 C 0.14 3.36 10.71 85.12 0.91 4.27 16 24 N -0.45 -11.22 10.10 -183.94 -1.86 -13.08 16 25 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.18 2.93 7.63 -2.91 -0.02 2.90 16 29 H 0.17 3.79 7.73 -2.91 -0.02 3.77 16 30 H 0.41 12.78 6.60 -92.70 -0.61 12.17 16 31 H 0.04 1.92 8.14 -2.39 -0.02 1.91 16 32 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 34 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 35 H 0.19 3.77 6.41 -2.91 -0.02 3.75 16 Total: -1.00 -67.17 313.40 3.76 -63.41 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.52 Total: 16.74 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 5.40 Total: 17.13 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -3.87 Total: -92.95 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -0.32 Total: -47.07 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -67.17 3.76 -63.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299650377.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.459 kcal (2) G-P(sol) polarization free energy of solvation -67.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds