Wall clock time and date at job start Tue Mar 31 2020 01:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34660 * 116.99849 * 2 1 4 4 O 1.21413 * 119.99818 * 359.97438 * 3 2 1 5 5 C 1.48249 * 120.00044 * 180.27036 * 3 2 1 6 6 C 1.39325 * 119.57407 * 179.45113 * 5 3 2 7 7 C 1.38464 * 119.18780 * 179.73455 * 6 5 3 8 8 C 1.39865 * 118.35315 * 0.52556 * 7 6 5 9 9 C 1.48014 * 120.45414 * 179.71071 * 8 7 6 10 10 O 1.21523 * 120.00528 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99427 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99657 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47590 * 324.99890 * 12 11 9 14 14 C 1.53003 * 109.47139 * 85.00179 * 12 11 9 15 15 C 1.50707 * 109.46981 * 205.00140 * 12 11 9 16 16 H 1.07997 * 119.99995 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00014 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99787 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00022 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47247 * 90.00057 * 19 17 15 21 21 H 1.48504 * 109.47072 * 209.99800 * 19 17 15 22 22 H 1.48499 * 109.47028 * 329.99751 * 19 17 15 23 23 C 1.39739 * 119.07928 * 359.73455 * 8 7 6 24 24 N 1.31401 * 120.72708 * 0.02562 * 23 8 7 25 25 H 1.08998 * 109.47630 * 300.00525 * 1 2 3 26 26 H 1.09004 * 109.46770 * 60.00929 * 1 2 3 27 27 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 28 28 H 1.08005 * 120.41249 * 359.97438 * 6 5 3 29 29 H 1.07994 * 120.82588 * 180.26347 * 7 6 5 30 30 H 0.96996 * 120.00279 * 0.02562 * 11 9 8 31 31 H 1.08994 * 109.46898 * 179.97438 * 14 12 11 32 32 H 1.08998 * 109.47080 * 299.99815 * 14 12 11 33 33 H 1.09000 * 109.46658 * 60.00041 * 14 12 11 34 34 H 0.97001 * 119.99983 * 180.02562 * 18 17 15 35 35 H 1.08005 * 119.63504 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4020 2.2181 -0.0005 5 6 3.5438 1.2775 -0.0061 6 6 4.1670 2.5235 -0.0176 7 6 5.5502 2.5868 -0.0176 8 6 6.2699 1.3875 -0.0172 9 6 7.7500 1.4009 -0.0236 10 8 8.3482 2.4587 -0.0288 11 7 8.4343 0.2397 -0.0237 12 6 9.8992 0.2528 -0.0306 13 1 10.2523 1.0963 -0.6240 14 6 10.4148 0.3870 1.4037 15 6 10.4102 -1.0320 -0.6300 16 1 9.7135 -1.7833 -0.9713 17 6 11.7673 -1.2487 -0.7418 18 7 12.6157 -0.3339 -0.3258 19 14 12.4007 -2.8415 -1.4842 20 1 12.5578 -2.6757 -2.9515 21 1 13.7146 -3.1806 -0.8809 22 1 11.4334 -3.9343 -1.2102 23 6 5.5723 0.1768 -0.0111 24 7 4.2584 0.1589 -0.0064 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.5784 3.4292 -0.0226 29 1 6.0606 3.5385 -0.0222 30 1 7.9568 -0.6046 -0.0199 31 1 11.5047 0.3963 1.3985 32 1 10.0452 1.3162 1.8372 33 1 10.0618 -0.4565 1.9970 34 1 13.5704 -0.4862 -0.4048 35 1 6.1191 -0.7546 -0.0112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299650381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:12 Heat of formation + Delta-G solvation = -82.990388 kcal Electronic energy + Delta-G solvation = -20505.247492 eV Core-core repulsion = 17082.771411 eV Total energy + Delta-G solvation = -3422.476080 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.10926 -40.06348 -38.55195 -36.75378 -35.02126 -32.86210 -32.73763 -31.76150 -29.10934 -28.08817 -25.49302 -25.25563 -23.81256 -22.19566 -21.12659 -19.77780 -18.64575 -17.95213 -17.50242 -16.69053 -16.42490 -15.97871 -15.19875 -15.12102 -14.72738 -14.53417 -14.15397 -13.92931 -13.47601 -13.23105 -13.16385 -12.75806 -12.48960 -12.34862 -11.80458 -11.15916 -11.10526 -11.08029 -11.04605 -10.86511 -10.39906 -10.30937 -10.14457 -10.03920 -9.48316 -9.31943 -9.14329 -8.63403 -8.10189 -6.19215 -4.29261 0.02644 0.96901 1.99880 2.27682 3.17034 3.21604 3.28536 3.30062 3.70575 3.85540 3.85920 4.30097 4.50400 4.59949 4.68462 4.81391 4.89641 4.91231 5.11330 5.14358 5.23086 5.36927 5.70145 5.89965 5.98982 6.20021 6.73265 6.85546 7.03966 7.20635 7.26194 7.42027 7.58083 7.60007 7.80400 8.05350 8.44933 8.64483 8.87907 9.38273 10.86785 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030370 B = 0.003401 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.734922 B = 8231.488924 C = 8942.121084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.333 6.333 3 C 0.526 3.474 4 O -0.499 6.499 5 C 0.095 3.905 6 C -0.110 4.110 7 C -0.031 4.031 8 C -0.137 4.137 9 C 0.543 3.457 10 O -0.541 6.541 11 N -0.695 5.695 12 C 0.264 3.736 13 H 0.052 0.948 14 C -0.148 4.148 15 C -0.537 4.537 16 H 0.063 0.937 17 C 0.067 3.933 18 N -0.883 5.883 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.127 3.873 24 N -0.437 5.437 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.155 0.845 29 H 0.160 0.840 30 H 0.390 0.610 31 H 0.092 0.908 32 H 0.016 0.984 33 H 0.028 0.972 34 H 0.265 0.735 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.961 0.756 1.278 19.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.247 6.247 3 C 0.369 3.631 4 O -0.386 6.386 5 C -0.041 4.041 6 C -0.131 4.131 7 C -0.057 4.057 8 C -0.142 4.142 9 C 0.326 3.674 10 O -0.420 6.420 11 N -0.343 5.343 12 C 0.163 3.837 13 H 0.070 0.930 14 C -0.207 4.207 15 C -0.576 4.576 16 H 0.081 0.919 17 C -0.136 4.136 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.034 4.034 24 N -0.148 5.148 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.173 0.827 29 H 0.178 0.822 30 H 0.223 0.777 31 H 0.111 0.889 32 H 0.035 0.965 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -18.994 1.022 1.296 19.066 hybrid contribution 0.406 -0.473 -0.373 0.727 sum -18.588 0.549 0.922 18.619 Atomic orbital electron populations 1.23365 0.75999 1.04072 1.02615 1.86692 1.23249 1.31606 1.83199 1.20858 0.87847 0.81789 0.72600 1.90846 1.65877 1.36192 1.45684 1.20102 0.90751 0.90381 1.02882 1.22068 0.95022 0.98262 0.97722 1.21809 0.92527 0.99435 0.91930 1.21753 0.96586 0.95119 1.00750 1.17986 0.85357 0.85446 0.78616 1.90754 1.69694 1.30640 1.50868 1.46564 1.10562 1.06421 1.70703 1.18861 0.72078 0.98490 0.94321 0.92994 1.22094 1.04628 0.96881 0.97096 1.21192 0.92169 1.02317 1.41895 0.91883 1.24883 0.96590 0.97105 0.95038 1.69896 1.02646 1.33771 1.45658 0.86419 0.78326 0.82930 0.79277 1.20511 1.21041 1.19739 1.23134 0.88994 0.97859 0.93399 1.67627 1.08078 1.29711 1.09392 0.91713 0.91719 0.87714 0.82692 0.82239 0.77651 0.88908 0.96519 0.95249 0.92457 0.81013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.33 -3.84 10.38 -40.38 -0.42 -4.26 16 3 C 0.53 6.66 7.95 34.85 0.28 6.93 16 4 O -0.50 -6.77 16.10 -19.20 -0.31 -7.08 16 5 C 0.10 1.23 6.75 -82.96 -0.56 0.67 16 6 C -0.11 -1.28 9.62 -39.09 -0.38 -1.66 16 7 C -0.03 -0.39 9.71 -38.89 -0.38 -0.77 16 8 C -0.14 -2.00 5.90 -104.72 -0.62 -2.62 16 9 C 0.54 10.20 7.75 -12.25 -0.09 10.11 16 10 O -0.54 -12.10 16.07 5.35 0.09 -12.01 16 11 N -0.69 -13.53 5.02 -55.82 -0.28 -13.81 16 12 C 0.26 6.39 2.56 -69.08 -0.18 6.22 16 13 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 14 C -0.15 -3.54 9.26 37.16 0.34 -3.19 16 15 C -0.54 -13.65 8.73 -34.44 -0.30 -13.95 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -24.14 11.32 55.43 0.63 -23.51 16 19 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 23 C 0.13 1.67 10.71 -17.18 -0.18 1.49 16 24 N -0.44 -5.94 10.10 -9.49 -0.10 -6.03 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.16 1.49 7.63 -52.48 -0.40 1.09 16 29 H 0.16 1.91 7.73 -52.49 -0.41 1.50 16 30 H 0.39 6.38 6.60 -40.82 -0.27 6.11 16 31 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.17 1.90 6.41 -52.48 -0.34 1.56 16 LS Contribution 313.41 15.07 4.72 4.72 Total: -1.00 -31.03 313.41 -5.56 -36.59 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -3.77 Total: 4.16 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -1.09 Total: 6.20 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.25 Total: -43.36 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.64 Total: -23.35 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.03 -5.56 -36.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299650381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.400 kcal (2) G-P(sol) polarization free energy of solvation -31.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds