Wall clock time and date at job start Tue Mar 31 2020 01:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34660 * 116.99849 * 2 1 4 4 O 1.21413 * 119.99818 * 359.97438 * 3 2 1 5 5 C 1.48249 * 120.00044 * 180.27036 * 3 2 1 6 6 C 1.39325 * 119.57407 * 179.45113 * 5 3 2 7 7 C 1.38464 * 119.18780 * 179.73455 * 6 5 3 8 8 C 1.39865 * 118.35315 * 0.52556 * 7 6 5 9 9 C 1.48014 * 120.45414 * 179.71071 * 8 7 6 10 10 O 1.21523 * 120.00528 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99427 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99657 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47590 * 324.99890 * 12 11 9 14 14 C 1.53003 * 109.47139 * 85.00179 * 12 11 9 15 15 C 1.50707 * 109.46981 * 205.00140 * 12 11 9 16 16 H 1.07997 * 119.99995 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00014 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99787 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00022 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47247 * 90.00057 * 19 17 15 21 21 H 1.48504 * 109.47072 * 209.99800 * 19 17 15 22 22 H 1.48499 * 109.47028 * 329.99751 * 19 17 15 23 23 C 1.39739 * 119.07928 * 359.73455 * 8 7 6 24 24 N 1.31401 * 120.72708 * 0.02562 * 23 8 7 25 25 H 1.08998 * 109.47630 * 300.00525 * 1 2 3 26 26 H 1.09004 * 109.46770 * 60.00929 * 1 2 3 27 27 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 28 28 H 1.08005 * 120.41249 * 359.97438 * 6 5 3 29 29 H 1.07994 * 120.82588 * 180.26347 * 7 6 5 30 30 H 0.96996 * 120.00279 * 0.02562 * 11 9 8 31 31 H 1.08994 * 109.46898 * 179.97438 * 14 12 11 32 32 H 1.08998 * 109.47080 * 299.99815 * 14 12 11 33 33 H 1.09000 * 109.46658 * 60.00041 * 14 12 11 34 34 H 0.97001 * 119.99983 * 180.02562 * 18 17 15 35 35 H 1.08005 * 119.63504 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4020 2.2181 -0.0005 5 6 3.5438 1.2775 -0.0061 6 6 4.1670 2.5235 -0.0176 7 6 5.5502 2.5868 -0.0176 8 6 6.2699 1.3875 -0.0172 9 6 7.7500 1.4009 -0.0236 10 8 8.3482 2.4587 -0.0288 11 7 8.4343 0.2397 -0.0237 12 6 9.8992 0.2528 -0.0306 13 1 10.2523 1.0963 -0.6240 14 6 10.4148 0.3870 1.4037 15 6 10.4102 -1.0320 -0.6300 16 1 9.7135 -1.7833 -0.9713 17 6 11.7673 -1.2487 -0.7418 18 7 12.6157 -0.3339 -0.3258 19 14 12.4007 -2.8415 -1.4842 20 1 12.5578 -2.6757 -2.9515 21 1 13.7146 -3.1806 -0.8809 22 1 11.4334 -3.9343 -1.2102 23 6 5.5723 0.1768 -0.0111 24 7 4.2584 0.1589 -0.0064 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.5784 3.4292 -0.0226 29 1 6.0606 3.5385 -0.0222 30 1 7.9568 -0.6046 -0.0199 31 1 11.5047 0.3963 1.3985 32 1 10.0452 1.3162 1.8372 33 1 10.0618 -0.4565 1.9970 34 1 13.5704 -0.4862 -0.4048 35 1 6.1191 -0.7546 -0.0112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299650381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:11 Heat of formation + Delta-G solvation = -103.810705 kcal Electronic energy + Delta-G solvation = -20506.150328 eV Core-core repulsion = 17082.771411 eV Total energy + Delta-G solvation = -3423.378917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.13401 -41.17939 -39.95681 -37.66147 -36.81745 -34.52252 -33.89401 -33.02577 -30.78902 -28.89967 -27.33783 -26.49518 -24.84623 -23.55092 -22.44675 -21.38959 -19.79051 -19.27317 -18.49995 -17.80529 -17.56319 -17.53824 -16.84731 -16.25602 -16.12129 -15.88446 -15.37922 -15.05211 -14.73493 -14.46233 -14.27805 -14.11727 -13.86868 -13.65517 -13.02271 -12.98312 -12.88661 -12.75614 -12.25326 -12.12551 -12.06095 -11.84950 -11.31351 -11.20140 -11.09685 -10.72347 -10.58701 -10.55554 -9.83797 -8.16762 -6.34005 -1.04863 -0.02871 0.96469 1.42562 1.47994 1.48549 1.58911 1.89532 2.22895 2.48624 2.66243 2.87650 3.14648 3.52272 3.58728 3.70692 3.81358 3.87688 4.27614 4.34961 4.44937 4.64652 4.73515 4.78158 4.87252 4.93545 5.09081 5.12091 5.19436 5.41111 5.56126 5.67521 5.87382 6.09264 6.24409 6.60605 6.71877 6.81285 7.26661 7.42416 8.89547 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030370 B = 0.003401 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.734922 B = 8231.488924 C = 8942.121084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.343 6.343 3 C 0.528 3.472 4 O -0.511 6.511 5 C 0.092 3.908 6 C -0.099 4.099 7 C -0.023 4.023 8 C -0.150 4.150 9 C 0.546 3.454 10 O -0.582 6.582 11 N -0.691 5.691 12 C 0.270 3.730 13 H 0.005 0.995 14 C -0.136 4.136 15 C -0.548 4.548 16 H 0.077 0.923 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.971 3.029 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.258 1.258 23 C 0.138 3.862 24 N -0.447 5.447 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.132 0.868 28 H 0.178 0.822 29 H 0.166 0.834 30 H 0.407 0.593 31 H 0.068 0.932 32 H 0.015 0.985 33 H 0.043 0.957 34 H 0.265 0.735 35 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.986 -0.646 1.101 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.258 6.258 3 C 0.371 3.629 4 O -0.399 6.399 5 C -0.044 4.044 6 C -0.119 4.119 7 C -0.050 4.050 8 C -0.156 4.156 9 C 0.332 3.668 10 O -0.464 6.464 11 N -0.340 5.340 12 C 0.167 3.833 13 H 0.023 0.977 14 C -0.195 4.195 15 C -0.586 4.586 16 H 0.095 0.905 17 C -0.184 4.184 18 N -0.555 5.555 19 Si 0.796 3.204 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.182 1.182 23 C -0.023 4.023 24 N -0.158 5.158 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.151 0.849 28 H 0.196 0.804 29 H 0.184 0.816 30 H 0.243 0.757 31 H 0.087 0.913 32 H 0.034 0.966 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -21.075 -0.414 1.122 21.109 hybrid contribution 0.900 0.006 -0.315 0.954 sum -20.175 -0.408 0.806 20.195 Atomic orbital electron populations 1.23707 0.73778 1.06146 1.03099 1.86673 1.25474 1.30945 1.82707 1.20782 0.87679 0.82027 0.72391 1.90840 1.66084 1.36610 1.46397 1.20390 0.91242 0.90716 1.02029 1.22221 0.94361 0.98782 0.96515 1.21932 0.93039 0.99125 0.90866 1.21352 0.93678 0.96719 1.03822 1.18469 0.87042 0.84341 0.76970 1.90730 1.71105 1.31999 1.52588 1.46248 1.08882 1.07770 1.71113 1.18444 0.74734 0.96508 0.93589 0.97690 1.21924 1.02999 0.97359 0.97247 1.21552 0.92669 1.02735 1.41643 0.90470 1.25764 0.96955 1.00266 0.95434 1.70043 1.02853 1.35739 1.46865 0.85359 0.77735 0.79250 0.78093 1.20489 1.21168 1.18213 1.23324 0.88926 0.97891 0.92203 1.67687 1.07973 1.30078 1.10057 0.91222 0.91266 0.84942 0.80435 0.81644 0.75659 0.91334 0.96613 0.93828 0.92533 0.79213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.34 -7.20 10.38 -55.69 -0.58 -7.77 16 3 C 0.53 12.29 7.95 70.48 0.56 12.85 16 4 O -0.51 -12.83 16.10 20.12 0.32 -12.51 16 5 C 0.09 2.20 6.75 41.93 0.28 2.48 16 6 C -0.10 -2.08 9.62 22.59 0.22 -1.86 16 7 C -0.02 -0.56 9.71 22.72 0.22 -0.34 16 8 C -0.15 -4.24 5.90 -19.93 -0.12 -4.36 16 9 C 0.55 20.56 7.75 86.84 0.67 21.23 16 10 O -0.58 -26.73 16.07 -3.79 -0.06 -26.79 16 11 N -0.69 -26.78 5.02 -448.80 -2.25 -29.04 16 12 C 0.27 13.34 2.56 44.25 0.11 13.46 16 13 H 0.01 0.30 7.58 -2.39 -0.02 0.29 16 14 C -0.14 -6.62 9.26 71.98 0.67 -5.96 16 15 C -0.55 -27.70 8.73 25.60 0.22 -27.48 16 16 H 0.08 3.59 7.74 -2.91 -0.02 3.57 16 17 C 0.02 0.84 5.30 84.65 0.45 1.29 16 18 N -0.92 -51.13 11.32 21.45 0.24 -50.89 16 19 Si 0.97 40.70 29.54 68.60 2.03 42.72 16 20 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.29 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 23 C 0.14 3.36 10.71 85.12 0.91 4.27 16 24 N -0.45 -11.22 10.10 -183.95 -1.86 -13.08 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.18 2.93 7.63 -2.91 -0.02 2.91 16 29 H 0.17 3.79 7.73 -2.91 -0.02 3.77 16 30 H 0.41 12.78 6.60 -92.71 -0.61 12.17 16 31 H 0.07 3.67 6.07 -2.39 -0.01 3.65 16 32 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 35 H 0.19 3.77 6.41 -2.91 -0.02 3.75 16 Total: -1.00 -67.17 313.41 3.76 -63.40 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.52 Total: 16.85 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 5.40 Total: 17.10 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -3.87 Total: -93.00 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -0.31 Total: -47.07 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Total: -67.17 3.76 -63.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299650381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.407 kcal (2) G-P(sol) polarization free energy of solvation -67.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds