Wall clock time and date at job start Tue Mar 31 2020 01:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34674 * 116.99701 * 2 1 4 4 O 1.21423 * 119.99972 * 359.97438 * 3 2 1 5 5 C 1.48128 * 119.99507 * 180.26997 * 3 2 1 6 6 C 1.39673 * 119.65164 * 179.44605 * 5 3 2 7 7 C 1.38543 * 119.23613 * 179.77340 * 6 5 3 8 8 C 1.38577 * 118.56097 * 0.49734 * 7 6 5 9 9 C 1.39613 * 119.25314 * 359.74454 * 8 7 6 10 10 C 1.48221 * 119.65470 * 179.97438 * 9 8 7 11 11 O 1.21506 * 120.00088 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99957 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00129 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47539 * 34.98634 * 13 12 10 15 15 C 1.53006 * 109.46632 * 274.99578 * 13 12 10 16 16 C 1.50704 * 109.47591 * 154.99556 * 13 12 10 17 17 H 1.07998 * 119.99403 * 359.97438 * 16 13 12 18 18 C 1.37870 * 119.99831 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00437 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99836 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46963 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47255 * 120.00037 * 20 18 16 23 23 H 1.48510 * 109.47097 * 240.00272 * 20 18 16 24 24 N 1.32356 * 120.69190 * 0.02562 * 9 8 7 25 25 H 1.08998 * 109.47630 * 300.00523 * 1 2 3 26 26 H 1.09004 * 109.46770 * 60.00927 * 1 2 3 27 27 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 28 28 H 1.07994 * 120.37873 * 0.02562 * 6 5 3 29 29 H 1.08001 * 120.72130 * 180.24638 * 7 6 5 30 30 H 1.07996 * 120.38071 * 179.77508 * 8 7 6 31 31 H 0.97006 * 120.00376 * 359.97438 * 12 10 9 32 32 H 1.09008 * 109.46665 * 180.02562 * 15 13 12 33 33 H 1.09004 * 109.47063 * 299.99451 * 15 13 12 34 34 H 1.08995 * 109.47263 * 60.00023 * 15 13 12 35 35 H 0.97000 * 119.99962 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4020 2.2183 -0.0005 5 6 3.5426 1.2775 -0.0060 6 6 4.1691 2.5257 -0.0177 7 6 5.5531 2.5882 -0.0185 8 6 6.2699 1.4022 -0.0182 9 6 5.5803 0.1883 -0.0116 10 6 6.3380 -1.0856 -0.0118 11 8 7.5529 -1.0699 -0.0171 12 7 5.6793 -2.2614 -0.0060 13 6 6.4282 -3.5206 -0.0056 14 1 7.3399 -3.4010 0.5797 15 6 6.7911 -3.8985 -1.4432 16 6 5.5807 -4.6090 0.6013 17 1 4.5841 -4.3851 0.9520 18 6 6.0778 -5.8905 0.7087 19 7 7.2916 -6.1631 0.2820 20 14 5.0276 -7.2395 1.4616 21 1 3.7123 -6.6778 1.8615 22 1 4.8222 -8.3212 0.4652 23 1 5.7136 -7.7917 2.6574 24 7 4.2570 0.1631 -0.0063 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.5814 3.4318 -0.0220 29 1 6.0625 3.5406 -0.0235 30 1 7.3497 1.4166 -0.0225 31 1 4.7093 -2.2741 -0.0014 32 1 7.3479 -4.8356 -1.4429 33 1 5.8794 -4.0182 -2.0285 34 1 7.4040 -3.1113 -1.8821 35 1 7.6410 -7.0648 0.3573 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299684430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:55 Heat of formation + Delta-G solvation = -104.150795 kcal Electronic energy + Delta-G solvation = -20932.000037 eV Core-core repulsion = 17508.606372 eV Total energy + Delta-G solvation = -3423.393665 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.09786 -41.12781 -39.87590 -37.62923 -36.79450 -34.52969 -33.77524 -32.97750 -30.73039 -28.86535 -27.35428 -26.07124 -25.74343 -23.28728 -22.28123 -21.32105 -19.76744 -19.22849 -18.18512 -17.73106 -17.54803 -17.20738 -17.09034 -16.52231 -16.23244 -16.06040 -15.19463 -14.93028 -14.77458 -14.41971 -14.31279 -14.07102 -13.70050 -13.25099 -13.02011 -12.99863 -12.88382 -12.75585 -12.29255 -12.19770 -12.11172 -11.83674 -11.33145 -11.16229 -11.11610 -10.70529 -10.60246 -10.50614 -9.80263 -8.17842 -6.34799 -0.75289 -0.25465 1.12342 1.44874 1.45712 1.49306 1.58362 1.81625 2.22494 2.45790 2.73635 2.85915 3.12600 3.59485 3.71963 3.82177 3.87930 4.22710 4.27767 4.34282 4.36986 4.70939 4.72650 4.87221 4.90508 4.93133 5.06613 5.15745 5.33044 5.39837 5.56807 5.65665 5.84834 6.07660 6.21324 6.60527 6.70718 6.88090 7.25997 7.41738 8.88812 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016822 B = 0.004906 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.136683 B = 5705.916784 C = 7121.657160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.528 3.472 4 O -0.511 6.511 5 C 0.066 3.934 6 C -0.075 4.075 7 C -0.062 4.062 8 C -0.081 4.081 9 C 0.065 3.935 10 C 0.551 3.449 11 O -0.580 6.580 12 N -0.684 5.684 13 C 0.267 3.733 14 H 0.008 0.992 15 C -0.133 4.133 16 C -0.548 4.548 17 H 0.068 0.932 18 C 0.018 3.982 19 N -0.915 5.915 20 Si 0.973 3.027 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.281 1.281 24 N -0.430 5.430 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.126 0.874 28 H 0.183 0.817 29 H 0.205 0.795 30 H 0.164 0.836 31 H 0.408 0.592 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.016 0.984 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.444 17.605 -1.049 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C 0.372 3.628 4 O -0.400 6.400 5 C -0.073 4.073 6 C -0.095 4.095 7 C -0.087 4.087 8 C -0.102 4.102 9 C -0.076 4.076 10 C 0.336 3.664 11 O -0.461 6.461 12 N -0.331 5.331 13 C 0.164 3.836 14 H 0.026 0.974 15 C -0.192 4.192 16 C -0.586 4.586 17 H 0.086 0.914 18 C -0.183 4.183 19 N -0.553 5.553 20 Si 0.797 3.203 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.207 1.207 24 N -0.145 5.145 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.144 0.856 28 H 0.200 0.800 29 H 0.222 0.778 30 H 0.182 0.818 31 H 0.244 0.756 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.035 0.965 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.163 16.870 -1.066 19.723 hybrid contribution -0.385 -0.388 0.302 0.625 sum -10.549 16.482 -0.764 19.583 Atomic orbital electron populations 1.23671 0.73915 1.05884 1.03175 1.86709 1.25476 1.31521 1.82718 1.20835 0.87879 0.81875 0.72208 1.90817 1.66045 1.36296 1.46843 1.20265 0.90804 0.90664 1.05585 1.22634 0.96263 0.97766 0.92838 1.22151 0.92457 0.99858 0.94246 1.22685 1.03616 0.91353 0.92502 1.21133 0.89151 0.94484 1.02809 1.18375 0.86739 0.84086 0.77175 1.90713 1.14271 1.87669 1.53417 1.46281 1.11254 1.05768 1.69828 1.18515 0.91496 0.79831 0.93764 0.97416 1.21897 0.99405 1.00841 0.97041 1.21518 1.01616 0.94066 1.41367 0.91384 1.25756 0.96287 1.00801 0.95421 1.70041 1.17069 1.21470 1.46736 0.85288 0.78772 0.78312 0.77906 1.18750 1.20181 1.20705 1.67333 1.07377 1.32266 1.07492 0.91056 0.90990 0.85628 0.80011 0.77796 0.81815 0.75633 0.90997 0.94359 0.96478 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.65 16 2 O -0.35 -9.16 10.38 -55.83 -0.58 -9.74 16 3 C 0.53 13.79 7.95 70.45 0.56 14.35 16 4 O -0.51 -13.44 16.11 20.08 0.32 -13.12 16 5 C 0.07 1.69 6.75 42.04 0.28 1.98 16 6 C -0.08 -1.30 9.64 22.69 0.22 -1.08 16 7 C -0.06 -0.90 10.16 22.42 0.23 -0.67 16 8 C -0.08 -1.89 9.63 22.68 0.22 -1.67 16 9 C 0.07 2.13 6.75 42.05 0.28 2.41 16 10 C 0.55 23.54 7.78 86.90 0.68 24.22 16 11 O -0.58 -28.04 15.98 -3.73 -0.06 -28.10 16 12 N -0.68 -31.27 5.06 -448.60 -2.27 -33.54 16 13 C 0.27 14.32 2.56 44.25 0.11 14.43 16 14 H 0.01 0.49 7.58 -2.39 -0.02 0.47 16 15 C -0.13 -6.89 9.26 71.98 0.67 -6.23 16 16 C -0.55 -29.99 8.73 25.60 0.22 -29.77 16 17 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 18 C 0.02 0.96 5.30 84.65 0.45 1.41 16 19 N -0.91 -52.57 11.32 21.45 0.24 -52.33 16 20 Si 0.97 42.68 29.54 68.60 2.03 44.70 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 23 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 24 N -0.43 -13.55 9.29 -174.12 -1.62 -15.16 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.11 8.14 -2.38 -0.02 1.10 16 27 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.18 2.14 7.64 -2.91 -0.02 2.12 16 29 H 0.21 0.91 8.06 -2.91 -0.02 0.88 16 30 H 0.16 3.61 7.64 -2.91 -0.02 3.58 16 31 H 0.41 17.39 7.87 -92.70 -0.73 16.66 16 32 H 0.07 4.02 6.07 -2.38 -0.01 4.00 16 33 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -71.47 315.65 3.59 -67.88 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.40 Total: 18.38 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: 5.12 Total: 21.02 kcal Atomic # 7 Polarization: -97.39 SS G_CDS: -3.64 Total: -101.03 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -0.32 Total: -50.95 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -71.47 3.59 -67.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299684430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.266 kcal (2) G-P(sol) polarization free energy of solvation -71.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds