Wall clock time and date at job start Tue Mar 31 2020 01:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34674 * 116.99701 * 2 1 4 4 O 1.21423 * 119.99972 * 359.97438 * 3 2 1 5 5 C 1.48128 * 119.99507 * 180.26997 * 3 2 1 6 6 C 1.39673 * 119.65164 * 179.44605 * 5 3 2 7 7 C 1.38543 * 119.23613 * 179.77340 * 6 5 3 8 8 C 1.38577 * 118.56097 * 0.49734 * 7 6 5 9 9 C 1.39613 * 119.25314 * 359.74454 * 8 7 6 10 10 C 1.48221 * 119.65470 * 179.97438 * 9 8 7 11 11 O 1.21506 * 120.00088 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99957 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00129 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47015 * 324.99085 * 13 12 10 15 15 C 1.53002 * 109.47718 * 84.99076 * 13 12 10 16 16 C 1.50702 * 109.47170 * 204.99563 * 13 12 10 17 17 H 1.07999 * 119.99974 * 359.97438 * 16 13 12 18 18 C 1.37883 * 120.00022 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99627 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99833 * 180.02562 * 18 16 13 21 21 H 1.48493 * 109.47252 * 60.00224 * 20 18 16 22 22 H 1.48502 * 109.46922 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47008 * 299.99782 * 20 18 16 24 24 N 1.32356 * 120.69190 * 0.02562 * 9 8 7 25 25 H 1.09004 * 109.46770 * 60.00927 * 1 2 3 26 26 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47630 * 300.00523 * 1 2 3 28 28 H 1.07994 * 120.37873 * 0.02562 * 6 5 3 29 29 H 1.08001 * 120.72130 * 180.24638 * 7 6 5 30 30 H 1.07996 * 120.38071 * 179.77508 * 8 7 6 31 31 H 0.97006 * 120.00376 * 359.97438 * 12 10 9 32 32 H 1.08998 * 109.47163 * 180.02562 * 15 13 12 33 33 H 1.08993 * 109.46961 * 300.00555 * 15 13 12 34 34 H 1.09004 * 109.46264 * 60.00358 * 15 13 12 35 35 H 0.97003 * 119.99572 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4020 2.2183 -0.0005 5 6 3.5426 1.2775 -0.0060 6 6 4.1691 2.5257 -0.0177 7 6 5.5531 2.5882 -0.0185 8 6 6.2699 1.4022 -0.0182 9 6 5.5803 0.1883 -0.0116 10 6 6.3380 -1.0856 -0.0118 11 8 7.5529 -1.0699 -0.0171 12 7 5.6793 -2.2614 -0.0060 13 6 6.4282 -3.5206 -0.0056 14 1 7.3350 -3.4042 -0.5991 15 6 6.8029 -3.8908 1.4309 16 6 5.5758 -4.6122 -0.5996 17 1 4.5761 -4.3904 -0.9427 18 6 6.0723 -5.8942 -0.7051 19 7 7.2895 -6.1644 -0.2868 20 14 5.0159 -7.2471 -1.4421 21 1 4.6525 -6.8874 -2.8362 22 1 5.7750 -8.5235 -1.4416 23 1 3.7805 -7.4063 -0.6338 24 7 4.2570 0.1631 -0.0063 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.5814 3.4318 -0.0220 29 1 6.0625 3.5406 -0.0235 30 1 7.3497 1.4166 -0.0225 31 1 4.7093 -2.2741 -0.0014 32 1 7.3605 -4.8274 1.4310 33 1 7.4194 -3.1012 1.8605 34 1 5.8960 -4.0073 2.0243 35 1 7.6386 -7.0664 -0.3607 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299684431.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:58 Heat of formation + Delta-G solvation = -82.088965 kcal Electronic energy + Delta-G solvation = -20930.553296 eV Core-core repulsion = 17508.116304 eV Total energy + Delta-G solvation = -3422.436992 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.04218 -39.96104 -38.37348 -36.63166 -34.88130 -33.11625 -32.29302 -31.77671 -28.84473 -28.05289 -25.26240 -24.95781 -24.60500 -21.92975 -20.94165 -19.59892 -18.50098 -17.97788 -16.86025 -16.57986 -16.34993 -16.10228 -15.44607 -15.08681 -14.76772 -14.37166 -14.04484 -13.72752 -13.60915 -13.14443 -12.98115 -12.40698 -12.35954 -12.17047 -11.69323 -11.12710 -11.09039 -10.94702 -10.94581 -10.75886 -10.34703 -10.23665 -10.21281 -10.04182 -9.42347 -9.25808 -9.04112 -8.53870 -7.94264 -6.10528 -4.19261 0.24624 0.76895 2.13408 2.39213 3.13788 3.28688 3.33203 3.35044 3.64506 3.99010 4.02626 4.37617 4.54420 4.65376 4.74330 4.93975 4.96095 5.03683 5.21980 5.23698 5.39927 5.42211 5.71680 5.85366 6.08885 6.25833 6.82440 6.96395 7.13410 7.22497 7.39580 7.53968 7.64442 7.72661 7.91583 8.14439 8.63021 8.75884 9.03677 9.47491 10.95587 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016819 B = 0.004907 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.390204 B = 5704.949906 C = 7121.787669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.329 6.329 3 C 0.528 3.472 4 O -0.503 6.503 5 C 0.085 3.915 6 C -0.095 4.095 7 C -0.089 4.089 8 C -0.085 4.085 9 C 0.093 3.907 10 C 0.553 3.447 11 O -0.546 6.546 12 N -0.680 5.680 13 C 0.261 3.739 14 H 0.052 0.948 15 C -0.147 4.147 16 C -0.533 4.533 17 H 0.063 0.937 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.903 3.097 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 N -0.407 5.407 25 H 0.064 0.936 26 H 0.106 0.894 27 H 0.064 0.936 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.158 0.842 31 H 0.402 0.598 32 H 0.092 0.908 33 H 0.015 0.985 34 H 0.028 0.972 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.878 15.648 1.201 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.371 3.629 4 O -0.391 6.391 5 C -0.054 4.054 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.106 4.106 9 C -0.049 4.049 10 C 0.335 3.665 11 O -0.424 6.424 12 N -0.326 5.326 13 C 0.160 3.840 14 H 0.069 0.931 15 C -0.206 4.206 16 C -0.571 4.571 17 H 0.081 0.919 18 C -0.136 4.136 19 N -0.522 5.522 20 Si 0.730 3.270 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.201 1.201 24 N -0.122 5.122 25 H 0.082 0.918 26 H 0.125 0.875 27 H 0.082 0.918 28 H 0.170 0.830 29 H 0.170 0.830 30 H 0.176 0.824 31 H 0.236 0.764 32 H 0.110 0.890 33 H 0.034 0.966 34 H 0.047 0.953 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.564 14.887 1.215 17.217 hybrid contribution -0.854 0.104 -0.365 0.935 sum -9.418 14.992 0.850 17.725 Atomic orbital electron populations 1.23376 0.75900 1.04274 1.02429 1.86727 1.23322 1.31347 1.82927 1.20781 0.87754 0.81875 0.72456 1.90833 1.65886 1.36225 1.46169 1.19981 0.90822 0.90006 1.04605 1.22211 0.95530 0.98097 0.95722 1.21632 0.93143 0.99269 0.97421 1.22517 1.03134 0.91590 0.93322 1.21796 0.88786 0.95672 0.98618 1.17769 0.86821 0.83037 0.78918 1.90753 1.12649 1.86836 1.52200 1.46502 1.11202 1.06150 1.68749 1.18876 0.92719 0.78120 0.94286 0.93066 1.22082 0.99383 1.01960 0.97145 1.21181 1.00975 0.93333 1.41645 0.91894 1.24876 0.95143 0.98477 0.95141 1.69894 1.15345 1.21001 1.45966 0.86481 0.80143 0.80653 0.79676 1.20169 1.21162 1.20115 1.67565 1.07462 1.30476 1.06676 0.91775 0.87537 0.91774 0.82969 0.82989 0.82425 0.76375 0.88951 0.96582 0.95269 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.38 16 2 O -0.33 -4.43 10.38 -40.42 -0.42 -4.85 16 3 C 0.53 7.26 7.95 34.79 0.28 7.53 16 4 O -0.50 -7.13 16.11 -19.21 -0.31 -7.44 16 5 C 0.08 1.16 6.75 -83.04 -0.56 0.60 16 6 C -0.10 -1.01 9.64 -38.93 -0.38 -1.38 16 7 C -0.09 -0.84 10.16 -39.34 -0.40 -1.24 16 8 C -0.08 -1.08 9.63 -38.94 -0.38 -1.45 16 9 C 0.09 1.53 6.75 -83.03 -0.56 0.97 16 10 C 0.55 11.42 7.78 -12.16 -0.09 11.32 16 11 O -0.55 -12.69 15.98 5.36 0.09 -12.60 16 12 N -0.68 -14.97 5.06 -55.76 -0.28 -15.25 16 13 C 0.26 6.73 2.56 -69.08 -0.18 6.55 16 14 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 15 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 16 C -0.53 -14.30 8.73 -34.44 -0.30 -14.60 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 18 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 19 N -0.88 -24.84 11.32 55.43 0.63 -24.21 16 20 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 N -0.41 -6.50 9.29 -6.39 -0.06 -6.56 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.15 1.29 7.64 -52.49 -0.40 0.89 16 29 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.16 1.87 7.64 -52.49 -0.40 1.47 16 31 H 0.40 8.28 7.87 -40.82 -0.32 7.96 16 32 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 315.66 15.07 4.76 4.76 Total: -1.00 -31.69 315.66 -5.78 -37.46 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -3.91 Total: 4.89 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -1.25 Total: 8.06 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.29 Total: -46.02 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.64 Total: -24.89 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.69 -5.78 -37.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299684431.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.624 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds