Wall clock time and date at job start Tue Mar 31 2020 01:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34674 * 116.99701 * 2 1 4 4 O 1.21423 * 119.99972 * 359.97438 * 3 2 1 5 5 C 1.48128 * 119.99507 * 180.26997 * 3 2 1 6 6 C 1.39673 * 119.65164 * 179.44605 * 5 3 2 7 7 C 1.38543 * 119.23613 * 179.77340 * 6 5 3 8 8 C 1.38577 * 118.56097 * 0.49734 * 7 6 5 9 9 C 1.39613 * 119.25314 * 359.74454 * 8 7 6 10 10 C 1.48221 * 119.65470 * 179.97438 * 9 8 7 11 11 O 1.21506 * 120.00088 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99957 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00129 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47015 * 324.99085 * 13 12 10 15 15 C 1.53002 * 109.47718 * 84.99076 * 13 12 10 16 16 C 1.50702 * 109.47170 * 204.99563 * 13 12 10 17 17 H 1.07999 * 119.99974 * 359.97438 * 16 13 12 18 18 C 1.37883 * 120.00022 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99627 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99833 * 180.02562 * 18 16 13 21 21 H 1.48493 * 109.47252 * 60.00224 * 20 18 16 22 22 H 1.48502 * 109.46922 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47008 * 299.99782 * 20 18 16 24 24 N 1.32356 * 120.69190 * 0.02562 * 9 8 7 25 25 H 1.09004 * 109.46770 * 60.00927 * 1 2 3 26 26 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47630 * 300.00523 * 1 2 3 28 28 H 1.07994 * 120.37873 * 0.02562 * 6 5 3 29 29 H 1.08001 * 120.72130 * 180.24638 * 7 6 5 30 30 H 1.07996 * 120.38071 * 179.77508 * 8 7 6 31 31 H 0.97006 * 120.00376 * 359.97438 * 12 10 9 32 32 H 1.08998 * 109.47163 * 180.02562 * 15 13 12 33 33 H 1.08993 * 109.46961 * 300.00555 * 15 13 12 34 34 H 1.09004 * 109.46264 * 60.00358 * 15 13 12 35 35 H 0.97003 * 119.99572 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4020 2.2183 -0.0005 5 6 3.5426 1.2775 -0.0060 6 6 4.1691 2.5257 -0.0177 7 6 5.5531 2.5882 -0.0185 8 6 6.2699 1.4022 -0.0182 9 6 5.5803 0.1883 -0.0116 10 6 6.3380 -1.0856 -0.0118 11 8 7.5529 -1.0699 -0.0171 12 7 5.6793 -2.2614 -0.0060 13 6 6.4282 -3.5206 -0.0056 14 1 7.3350 -3.4042 -0.5991 15 6 6.8029 -3.8908 1.4309 16 6 5.5758 -4.6122 -0.5996 17 1 4.5761 -4.3904 -0.9427 18 6 6.0723 -5.8942 -0.7051 19 7 7.2895 -6.1644 -0.2868 20 14 5.0159 -7.2471 -1.4421 21 1 4.6525 -6.8874 -2.8362 22 1 5.7750 -8.5235 -1.4416 23 1 3.7805 -7.4063 -0.6338 24 7 4.2570 0.1631 -0.0063 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.5814 3.4318 -0.0220 29 1 6.0625 3.5406 -0.0235 30 1 7.3497 1.4166 -0.0225 31 1 4.7093 -2.2741 -0.0014 32 1 7.3605 -4.8274 1.4310 33 1 7.4194 -3.1012 1.8605 34 1 5.8960 -4.0073 2.0243 35 1 7.6386 -7.0664 -0.3607 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299684431.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:58 Heat of formation + Delta-G solvation = -104.045106 kcal Electronic energy + Delta-G solvation = -20931.505386 eV Core-core repulsion = 17508.116304 eV Total energy + Delta-G solvation = -3423.389082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.09802 -41.12785 -39.87588 -37.62920 -36.79286 -34.52821 -33.77503 -32.97757 -30.73011 -28.86526 -27.34921 -26.07112 -25.74339 -23.28615 -22.28070 -21.32123 -19.76678 -19.22833 -18.18078 -17.72989 -17.54780 -17.20299 -17.08915 -16.52367 -16.23412 -16.06375 -15.19452 -14.93209 -14.77414 -14.41363 -14.31354 -14.06940 -13.68947 -13.25151 -13.02066 -13.00488 -12.87199 -12.74679 -12.28729 -12.20231 -12.12753 -11.83667 -11.33048 -11.16320 -11.13658 -10.70352 -10.58963 -10.50602 -9.80277 -8.17329 -6.34490 -0.75313 -0.25496 1.12318 1.45673 1.47966 1.49294 1.55830 1.81618 2.22444 2.46099 2.73610 2.85922 3.12913 3.59481 3.71941 3.82156 3.87907 4.22707 4.27774 4.34297 4.36960 4.70963 4.72705 4.87195 4.90499 4.93110 5.06647 5.15735 5.33017 5.39897 5.56571 5.65678 5.84997 6.07732 6.21321 6.60521 6.70429 6.88149 7.26018 7.41850 8.88884 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016819 B = 0.004907 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.390204 B = 5704.949906 C = 7121.787669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.349 6.349 3 C 0.528 3.472 4 O -0.511 6.511 5 C 0.066 3.934 6 C -0.075 4.075 7 C -0.062 4.062 8 C -0.081 4.081 9 C 0.065 3.935 10 C 0.551 3.449 11 O -0.580 6.580 12 N -0.684 5.684 13 C 0.267 3.733 14 H 0.008 0.992 15 C -0.133 4.133 16 C -0.550 4.550 17 H 0.068 0.932 18 C 0.018 3.982 19 N -0.915 5.915 20 Si 0.973 3.027 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.265 1.265 24 N -0.430 5.430 25 H 0.071 0.929 26 H 0.126 0.874 27 H 0.071 0.929 28 H 0.183 0.817 29 H 0.205 0.795 30 H 0.164 0.836 31 H 0.408 0.592 32 H 0.071 0.929 33 H 0.016 0.984 34 H 0.037 0.963 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.433 17.582 1.006 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C 0.372 3.628 4 O -0.400 6.400 5 C -0.073 4.073 6 C -0.095 4.095 7 C -0.087 4.087 8 C -0.102 4.102 9 C -0.076 4.076 10 C 0.336 3.664 11 O -0.461 6.461 12 N -0.331 5.331 13 C 0.165 3.835 14 H 0.026 0.974 15 C -0.192 4.192 16 C -0.588 4.588 17 H 0.086 0.914 18 C -0.182 4.182 19 N -0.553 5.553 20 Si 0.797 3.203 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.190 1.190 24 N -0.145 5.145 25 H 0.089 0.911 26 H 0.144 0.856 27 H 0.090 0.910 28 H 0.200 0.800 29 H 0.222 0.778 30 H 0.182 0.818 31 H 0.244 0.756 32 H 0.090 0.910 33 H 0.035 0.965 34 H 0.056 0.944 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.145 16.841 1.023 19.687 hybrid contribution -0.407 -0.373 -0.301 0.629 sum -10.551 16.468 0.722 19.571 Atomic orbital electron populations 1.23671 0.73914 1.05887 1.03173 1.86709 1.25477 1.31518 1.82718 1.20834 0.87877 0.81876 0.72208 1.90817 1.66044 1.36297 1.46841 1.20266 0.90806 0.90663 1.05583 1.22635 0.96263 0.97768 0.92838 1.22151 0.92457 0.99857 0.94246 1.22685 1.03617 0.91354 0.92504 1.21133 0.89152 0.94483 1.02809 1.18376 0.86741 0.84088 0.77175 1.90713 1.14273 1.87667 1.53421 1.46281 1.11254 1.05768 1.69829 1.18502 0.91479 0.79814 0.93745 0.97437 1.21896 0.99376 1.00834 0.97071 1.21465 1.01303 0.93980 1.42061 0.91377 1.25758 0.96316 1.00812 0.95335 1.70030 1.16924 1.21584 1.46725 0.85391 0.78572 0.77434 0.78907 1.19696 1.20806 1.19015 1.67332 1.07375 1.32265 1.07495 0.91068 0.85621 0.90985 0.80010 0.77797 0.81816 0.75632 0.90991 0.96489 0.94370 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.35 -9.15 10.38 -55.83 -0.58 -9.73 16 3 C 0.53 13.78 7.95 70.45 0.56 14.34 16 4 O -0.51 -13.44 16.11 20.08 0.32 -13.11 16 5 C 0.07 1.69 6.75 42.04 0.28 1.98 16 6 C -0.08 -1.30 9.64 22.69 0.22 -1.08 16 7 C -0.06 -0.90 10.16 22.42 0.23 -0.67 16 8 C -0.08 -1.89 9.63 22.68 0.22 -1.67 16 9 C 0.07 2.13 6.75 42.05 0.28 2.41 16 10 C 0.55 23.55 7.78 86.90 0.68 24.23 16 11 O -0.58 -28.05 15.98 -3.73 -0.06 -28.11 16 12 N -0.68 -31.28 5.06 -448.61 -2.27 -33.55 16 13 C 0.27 14.36 2.56 44.25 0.11 14.48 16 14 H 0.01 0.48 7.58 -2.39 -0.02 0.46 16 15 C -0.13 -6.89 9.26 71.98 0.67 -6.23 16 16 C -0.55 -30.14 8.73 25.60 0.22 -29.91 16 17 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 18 C 0.02 0.99 5.30 84.66 0.45 1.44 16 19 N -0.91 -52.58 11.32 21.45 0.24 -52.33 16 20 Si 0.97 42.64 29.54 68.60 2.03 44.67 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 N -0.43 -13.55 9.29 -174.12 -1.62 -15.16 16 25 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 28 H 0.18 2.15 7.64 -2.91 -0.02 2.12 16 29 H 0.21 0.91 8.06 -2.91 -0.02 0.89 16 30 H 0.16 3.61 7.64 -2.91 -0.02 3.59 16 31 H 0.41 17.38 7.87 -92.70 -0.73 16.65 16 32 H 0.07 4.02 6.07 -2.39 -0.01 4.00 16 33 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -71.42 315.66 3.59 -67.83 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.40 Total: 18.55 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 5.12 Total: 20.95 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -3.64 Total: -101.05 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -0.32 Total: -50.96 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -71.42 3.59 -67.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299684431.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.215 kcal (2) G-P(sol) polarization free energy of solvation -71.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds