Wall clock time and date at job start Tue Mar 31 2020 01:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47144 * 2 1 4 4 N 1.46504 * 109.46799 * 240.00532 * 2 1 3 5 5 C 1.34779 * 120.00009 * 84.99832 * 4 2 1 6 6 O 1.21588 * 119.99843 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00335 * 179.97438 * 5 4 2 8 8 C 1.39954 * 120.00272 * 174.82080 * 7 5 4 9 9 C 1.39290 * 119.95058 * 146.38769 * 8 7 5 10 10 C 1.38487 * 120.43268 * 179.97438 * 9 8 7 11 11 C 1.37674 * 120.32005 * 359.97438 * 10 9 8 12 12 C 1.40742 * 119.88737 * 0.02940 * 11 10 9 13 13 C 1.41412 * 120.21366 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99823 * 151.77083 * 13 12 11 15 15 C 1.39928 * 119.99698 * 331.76988 * 13 12 11 16 16 N 1.30832 * 120.00172 * 348.98597 * 15 13 12 17 17 Si 1.86800 * 120.00009 * 168.99369 * 15 13 12 18 18 H 1.48498 * 109.47464 * 89.99306 * 17 15 13 19 19 H 1.48498 * 109.47200 * 209.99820 * 17 15 13 20 20 H 1.48507 * 109.46951 * 329.99849 * 17 15 13 21 21 C 1.38240 * 119.94632 * 326.10768 * 8 7 5 22 22 C 1.50692 * 109.47381 * 120.00913 * 2 1 3 23 23 O 1.20826 * 120.00258 * 119.99634 * 22 2 1 24 24 O 1.34234 * 120.00151 * 299.99464 * 22 2 1 25 25 H 1.08994 * 109.47603 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46992 * 299.99411 * 1 2 3 27 27 H 1.09005 * 109.47425 * 59.98948 * 1 2 3 28 28 H 0.96992 * 120.00032 * 264.72728 * 4 2 1 29 29 H 0.97008 * 120.00049 * 354.82507 * 7 5 4 30 30 H 1.08000 * 119.77866 * 359.97438 * 9 8 7 31 31 H 1.08003 * 119.83573 * 180.02562 * 10 9 8 32 32 H 1.08000 * 120.05698 * 180.02562 * 11 10 9 33 33 H 0.97001 * 120.00198 * 180.02562 * 16 15 13 34 34 H 1.07995 * 120.15656 * 0.02562 * 21 8 7 35 35 H 0.96699 * 116.99995 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0181 -2.3572 6 8 1.8582 1.1618 -2.4116 7 7 2.5966 -0.6531 -3.4576 8 6 2.6278 0.0145 -4.6873 9 6 3.6375 -0.2654 -5.6051 10 6 3.6777 0.3889 -6.8250 11 6 2.7187 1.3238 -7.1442 12 6 1.6925 1.6171 -6.2268 13 6 0.7037 2.5757 -6.5477 14 1 -0.2841 2.4972 -6.1182 15 6 1.0051 3.6260 -7.4218 16 7 2.2456 3.8499 -7.7723 17 14 -0.3635 4.7088 -8.0880 18 1 -0.5739 5.8597 -7.1735 19 1 0.0120 5.2088 -9.4349 20 1 -1.6171 3.9184 -8.1852 21 6 1.6532 0.9466 -4.9914 22 6 2.0324 -0.7106 1.2303 23 8 2.7270 -1.6929 1.1193 24 8 1.7082 -0.2521 2.4495 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 2.2527 -1.6306 -1.1519 29 1 2.8985 -1.5730 -3.3974 30 1 4.3939 -0.9975 -5.3637 31 1 4.4647 0.1641 -7.5296 32 1 2.7540 1.8312 -8.0969 33 1 2.4546 4.5782 -8.3779 34 1 0.8677 1.1613 -4.2821 35 1 2.0537 -0.7414 3.2087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313486173.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:20 Heat of formation + Delta-G solvation = -96.666838 kcal Electronic energy + Delta-G solvation = -20876.556360 eV Core-core repulsion = 17453.487224 eV Total energy + Delta-G solvation = -3423.069136 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.88112 -39.77650 -37.44933 -36.52247 -35.19674 -34.31580 -33.03025 -30.81456 -29.76755 -27.75945 -25.35848 -25.20310 -22.42844 -21.03313 -20.70130 -20.17098 -18.64144 -18.10047 -17.74024 -16.50097 -16.20704 -15.60965 -15.31658 -14.99238 -14.67875 -14.38603 -14.09185 -13.57999 -13.24994 -12.92798 -12.74665 -12.46275 -12.09922 -11.94953 -11.85671 -11.64024 -11.27692 -11.06264 -10.78138 -10.63453 -10.47015 -10.17355 -9.72930 -9.60380 -9.24188 -9.11903 -8.88886 -7.37125 -6.83838 -6.61758 -4.30059 1.82129 2.30740 2.76897 2.91579 3.12727 3.15405 3.17757 3.24607 3.67069 4.01540 4.44990 4.72475 4.74922 4.87380 4.96263 5.47910 5.59691 5.75894 6.03142 6.10532 6.26078 6.35568 6.43340 6.74467 6.80181 7.08034 7.13515 7.28229 7.36445 7.49840 7.71659 7.83427 8.03113 8.14248 8.28526 8.41898 8.71128 8.90572 9.00805 9.04854 10.31534 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024123 B = 0.004006 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.428125 B = 6987.053801 C = 7906.066426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.175 3.825 3 H 0.129 0.871 4 N -0.741 5.741 5 C 0.703 3.297 6 O -0.560 6.560 7 N -0.677 5.677 8 C 0.166 3.834 9 C -0.259 4.259 10 C -0.094 4.094 11 C -0.169 4.169 12 C 0.119 3.881 13 C -0.458 4.458 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.802 5.802 17 Si 0.910 3.090 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.207 4.207 22 C 0.480 3.520 23 O -0.513 6.513 24 O -0.508 6.508 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.402 0.598 29 H 0.396 0.604 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.121 0.879 33 H 0.278 0.722 34 H 0.108 0.892 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.688 -7.982 13.571 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.067 3.933 3 H 0.147 0.853 4 N -0.401 5.401 5 C 0.404 3.596 6 O -0.435 6.435 7 N -0.323 5.323 8 C 0.074 3.926 9 C -0.281 4.281 10 C -0.113 4.113 11 C -0.188 4.188 12 C 0.116 3.884 13 C -0.488 4.488 14 H 0.094 0.906 15 C -0.143 4.143 16 N -0.428 5.428 17 Si 0.735 3.265 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.186 1.186 21 C -0.229 4.229 22 C 0.322 3.678 23 O -0.401 6.401 24 O -0.320 6.320 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.238 0.762 29 H 0.230 0.770 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.139 0.861 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -1.799 -6.768 13.043 14.805 hybrid contribution 0.179 -0.725 0.385 0.840 sum -1.620 -7.493 13.429 15.463 Atomic orbital electron populations 1.22170 0.91811 1.03131 1.04659 1.20051 0.96036 0.97650 0.79561 0.85330 1.44904 1.73046 1.14186 1.07949 1.15811 0.78930 0.85063 0.79826 1.91012 1.55254 1.13501 1.83716 1.42537 1.67164 1.15837 1.06786 1.17233 0.96046 0.96570 0.82797 1.20032 1.01057 1.09248 0.97726 1.20464 0.98313 0.97160 0.95323 1.21403 0.97558 0.99213 1.00663 1.17501 0.91969 0.89898 0.89012 1.19533 0.98651 1.07421 1.23194 0.90590 1.25871 0.96110 0.97726 0.94566 1.69806 1.18674 1.26972 1.27338 0.86281 0.81679 0.80033 0.78492 1.19554 1.20227 1.18587 1.20997 1.00649 1.03684 0.97537 1.23561 0.76708 0.82371 0.85178 1.90720 1.35857 1.26344 1.87152 1.84515 1.72070 1.58872 1.16501 0.92013 0.90251 0.89688 0.76204 0.77049 0.89305 0.89015 0.86090 0.91073 0.87389 0.72793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.42 37.16 0.35 -1.27 16 2 C 0.17 2.03 3.09 -69.08 -0.21 1.82 16 3 H 0.13 1.62 7.58 -51.93 -0.39 1.23 16 4 N -0.74 -9.95 4.96 -59.82 -0.30 -10.25 16 5 C 0.70 12.78 8.26 -86.92 -0.72 12.06 16 6 O -0.56 -12.61 13.72 5.29 0.07 -12.54 16 7 N -0.68 -12.25 5.35 -14.27 -0.08 -12.33 16 8 C 0.17 3.78 6.26 -83.76 -0.52 3.25 16 9 C -0.26 -5.75 9.97 -39.10 -0.39 -6.14 16 10 C -0.09 -2.20 10.02 -39.70 -0.40 -2.60 16 11 C -0.17 -4.45 8.66 -38.84 -0.34 -4.79 16 12 C 0.12 3.29 5.55 -106.85 -0.59 2.70 16 13 C -0.46 -12.62 9.06 -37.74 -0.34 -12.96 16 14 H 0.08 2.03 7.87 -52.49 -0.41 1.62 16 15 C 0.07 1.91 5.25 -17.34 -0.09 1.82 16 16 N -0.80 -21.36 10.82 55.55 0.60 -20.76 16 17 Si 0.91 19.29 29.57 -169.99 -5.03 14.26 16 18 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 21 C -0.21 -5.37 8.39 -38.68 -0.32 -5.70 16 22 C 0.48 4.93 7.69 36.00 0.28 5.21 16 23 O -0.51 -6.46 16.59 -18.75 -0.31 -6.77 16 24 O -0.51 -3.68 13.33 -39.27 -0.52 -4.20 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.66 8.11 -51.92 -0.42 0.24 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.40 4.65 7.80 -40.82 -0.32 4.33 16 29 H 0.40 5.58 8.83 -40.82 -0.36 5.22 16 30 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 32 H 0.12 3.28 6.18 -52.49 -0.32 2.96 16 33 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 34 H 0.11 2.87 6.44 -52.49 -0.34 2.54 16 35 H 0.41 1.17 9.10 45.56 0.41 1.58 16 LS Contribution 309.89 15.07 4.67 4.67 Total: -1.00 -33.32 309.89 -7.17 -40.50 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -2.98 Total: 14.04 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -3.30 Total: -6.61 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.23 Total: -43.33 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.76 Total: -23.52 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.32 -7.17 -40.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313486173.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.171 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds