Wall clock time and date at job start Tue Mar 31 2020 01:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47144 * 2 1 4 4 N 1.46504 * 109.46799 * 240.00532 * 2 1 3 5 5 C 1.34779 * 120.00009 * 84.99832 * 4 2 1 6 6 O 1.21588 * 119.99843 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00335 * 179.97438 * 5 4 2 8 8 C 1.39954 * 120.00272 * 174.82080 * 7 5 4 9 9 C 1.39290 * 119.95058 * 146.38769 * 8 7 5 10 10 C 1.38487 * 120.43268 * 179.97438 * 9 8 7 11 11 C 1.37674 * 120.32005 * 359.97438 * 10 9 8 12 12 C 1.40742 * 119.88737 * 0.02940 * 11 10 9 13 13 C 1.41412 * 120.21366 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99823 * 151.77083 * 13 12 11 15 15 C 1.39928 * 119.99698 * 331.76988 * 13 12 11 16 16 N 1.30832 * 120.00172 * 348.98597 * 15 13 12 17 17 Si 1.86800 * 120.00009 * 168.99369 * 15 13 12 18 18 H 1.48498 * 109.47464 * 89.99306 * 17 15 13 19 19 H 1.48498 * 109.47200 * 209.99820 * 17 15 13 20 20 H 1.48507 * 109.46951 * 329.99849 * 17 15 13 21 21 C 1.38240 * 119.94632 * 326.10768 * 8 7 5 22 22 C 1.50692 * 109.47381 * 120.00913 * 2 1 3 23 23 O 1.20826 * 120.00258 * 119.99634 * 22 2 1 24 24 O 1.34234 * 120.00151 * 299.99464 * 22 2 1 25 25 H 1.08994 * 109.47603 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46992 * 299.99411 * 1 2 3 27 27 H 1.09005 * 109.47425 * 59.98948 * 1 2 3 28 28 H 0.96992 * 120.00032 * 264.72728 * 4 2 1 29 29 H 0.97008 * 120.00049 * 354.82507 * 7 5 4 30 30 H 1.08000 * 119.77866 * 359.97438 * 9 8 7 31 31 H 1.08003 * 119.83573 * 180.02562 * 10 9 8 32 32 H 1.08000 * 120.05698 * 180.02562 * 11 10 9 33 33 H 0.97001 * 120.00198 * 180.02562 * 16 15 13 34 34 H 1.07995 * 120.15656 * 0.02562 * 21 8 7 35 35 H 0.96699 * 116.99995 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0181 -2.3572 6 8 1.8582 1.1618 -2.4116 7 7 2.5966 -0.6531 -3.4576 8 6 2.6278 0.0145 -4.6873 9 6 3.6375 -0.2654 -5.6051 10 6 3.6777 0.3889 -6.8250 11 6 2.7187 1.3238 -7.1442 12 6 1.6925 1.6171 -6.2268 13 6 0.7037 2.5757 -6.5477 14 1 -0.2841 2.4972 -6.1182 15 6 1.0051 3.6260 -7.4218 16 7 2.2456 3.8499 -7.7723 17 14 -0.3635 4.7088 -8.0880 18 1 -0.5739 5.8597 -7.1735 19 1 0.0120 5.2088 -9.4349 20 1 -1.6171 3.9184 -8.1852 21 6 1.6532 0.9466 -4.9914 22 6 2.0324 -0.7106 1.2303 23 8 2.7270 -1.6929 1.1193 24 8 1.7082 -0.2521 2.4495 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 2.2527 -1.6306 -1.1519 29 1 2.8985 -1.5730 -3.3974 30 1 4.3939 -0.9975 -5.3637 31 1 4.4647 0.1641 -7.5296 32 1 2.7540 1.8312 -8.0969 33 1 2.4546 4.5782 -8.3779 34 1 0.8677 1.1613 -4.2821 35 1 2.0537 -0.7414 3.2087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313486173.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:19 Heat of formation + Delta-G solvation = -121.161757 kcal Electronic energy + Delta-G solvation = -20877.618540 eV Core-core repulsion = 17453.487224 eV Total energy + Delta-G solvation = -3424.131315 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.92163 -41.07541 -39.17959 -37.33409 -36.50893 -35.96119 -34.84229 -32.01660 -31.71248 -29.47047 -27.22346 -26.21304 -23.82728 -22.77278 -22.10601 -21.60169 -19.91614 -19.51469 -18.98422 -17.86708 -17.15871 -17.14267 -16.84704 -16.46141 -16.24400 -16.02701 -15.40930 -14.92891 -14.70290 -14.48215 -14.08944 -13.81338 -13.55174 -13.31401 -13.09649 -12.80804 -12.74717 -12.63033 -12.54131 -12.19701 -12.00052 -11.65587 -11.56559 -11.35133 -11.05619 -10.72025 -10.40242 -9.32937 -8.67295 -8.54010 -6.35005 0.93902 1.00209 1.04091 1.27759 1.38707 1.50359 1.54170 2.04193 2.19178 2.24592 2.79668 3.17353 3.77000 3.89470 3.97999 4.10393 4.49119 4.64198 4.65629 4.72622 5.05578 5.12564 5.15130 5.17373 5.18765 5.24766 5.36637 5.46960 5.69463 5.84428 6.05762 6.13536 6.16620 6.39446 6.72545 6.84678 6.98236 6.99636 7.04660 7.50829 8.40656 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024123 B = 0.004006 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.428125 B = 6987.053801 C = 7906.066426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.166 3.834 3 H 0.118 0.882 4 N -0.721 5.721 5 C 0.703 3.297 6 O -0.607 6.607 7 N -0.667 5.667 8 C 0.173 3.827 9 C -0.248 4.248 10 C -0.092 4.092 11 C -0.194 4.194 12 C 0.089 3.911 13 C -0.501 4.501 14 H 0.067 0.933 15 C 0.032 3.968 16 N -0.833 5.833 17 Si 0.985 3.015 18 H -0.266 1.266 19 H -0.262 1.262 20 H -0.259 1.259 21 C -0.231 4.231 22 C 0.497 3.503 23 O -0.536 6.536 24 O -0.497 6.497 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.415 0.585 29 H 0.418 0.582 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.287 0.713 34 H 0.089 0.911 35 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.279 -9.162 14.789 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.059 3.941 3 H 0.135 0.865 4 N -0.380 5.380 5 C 0.404 3.596 6 O -0.485 6.485 7 N -0.315 5.315 8 C 0.079 3.921 9 C -0.269 4.269 10 C -0.111 4.111 11 C -0.214 4.214 12 C 0.086 3.914 13 C -0.531 4.531 14 H 0.085 0.915 15 C -0.181 4.181 16 N -0.460 5.460 17 Si 0.805 3.195 18 H -0.191 1.191 19 H -0.186 1.186 20 H -0.183 1.183 21 C -0.253 4.253 22 C 0.339 3.661 23 O -0.426 6.426 24 O -0.311 6.311 25 H 0.094 0.906 26 H 0.120 0.880 27 H 0.076 0.924 28 H 0.253 0.747 29 H 0.256 0.744 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -1.374 -8.025 14.340 16.490 hybrid contribution 0.126 -0.467 0.191 0.520 sum -1.248 -8.491 14.531 16.876 Atomic orbital electron populations 1.22107 0.90596 1.03932 1.04411 1.20187 0.97031 0.97192 0.79709 0.86485 1.44673 1.71730 1.14542 1.07098 1.15935 0.78393 0.84572 0.80741 1.90993 1.57082 1.15847 1.84596 1.42294 1.67147 1.16681 1.05401 1.17278 0.94892 0.95460 0.84441 1.20451 1.00985 1.08901 0.96599 1.20829 0.97966 0.95859 0.96458 1.21367 0.98879 1.00934 1.00249 1.17839 0.92864 0.90692 0.90024 1.19764 0.98692 1.09181 1.25478 0.91497 1.26724 0.98688 0.98569 0.94102 1.69861 1.20430 1.27823 1.27835 0.85175 0.78256 0.77809 0.78231 1.19105 1.18592 1.18267 1.20963 1.01706 1.05577 0.97024 1.22984 0.76037 0.81542 0.85541 1.90724 1.36973 1.27332 1.87595 1.84454 1.71589 1.58802 1.16222 0.90648 0.87981 0.92435 0.74706 0.74395 0.85146 0.85917 0.87630 0.90287 0.89254 0.70114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.42 71.98 0.68 -2.25 16 2 C 0.17 3.67 3.09 44.24 0.14 3.81 16 3 H 0.12 2.93 7.58 -2.39 -0.02 2.91 16 4 N -0.72 -18.49 4.96 -461.42 -2.29 -20.78 16 5 C 0.70 25.33 8.26 179.06 1.48 26.81 16 6 O -0.61 -28.10 13.72 -3.99 -0.05 -28.16 16 7 N -0.67 -23.28 5.35 -317.32 -1.70 -24.98 16 8 C 0.17 7.81 6.26 38.10 0.24 8.05 16 9 C -0.25 -10.47 9.97 22.58 0.23 -10.24 16 10 C -0.09 -4.24 10.02 22.20 0.22 -4.02 16 11 C -0.19 -10.53 8.66 22.75 0.20 -10.33 16 12 C 0.09 5.11 5.55 -21.31 -0.12 4.99 16 13 C -0.50 -29.08 9.06 23.46 0.21 -28.87 16 14 H 0.07 3.82 7.87 -2.91 -0.02 3.79 16 15 C 0.03 1.73 5.25 85.25 0.45 2.18 16 16 N -0.83 -45.66 10.82 21.82 0.24 -45.42 16 17 Si 0.98 40.44 29.57 68.60 2.03 42.47 16 18 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 19 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 20 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 21 C -0.23 -12.43 8.39 22.85 0.19 -12.24 16 22 C 0.50 9.05 7.69 71.23 0.55 9.59 16 23 O -0.54 -12.23 16.59 21.96 0.36 -11.87 16 24 O -0.50 -5.69 13.33 -51.46 -0.69 -6.38 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.10 1.50 8.11 -2.38 -0.02 1.48 16 27 H 0.06 1.45 8.14 -2.38 -0.02 1.44 16 28 H 0.41 8.72 7.80 -92.71 -0.72 8.00 16 29 H 0.42 10.68 8.83 -92.70 -0.82 9.86 16 30 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 31 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 32 H 0.11 5.95 6.18 -2.91 -0.02 5.93 16 33 H 0.29 14.15 8.30 -92.71 -0.77 13.38 16 34 H 0.09 5.05 6.44 -2.91 -0.02 5.03 16 35 H 0.44 0.96 9.10 -74.06 -0.67 0.29 16 Total: -1.00 -75.37 309.89 1.31 -74.06 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: -1.05 Total: 33.58 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 4.46 Total: -12.53 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -3.75 Total: -91.18 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -0.38 Total: -46.41 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -75.37 1.31 -74.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313486173.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.102 kcal (2) G-P(sol) polarization free energy of solvation -75.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds