Wall clock time and date at job start Tue Mar 31 2020 01:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47383 * 2 1 4 4 C 1.46498 * 119.99878 * 275.85698 * 3 2 1 5 5 C 1.50702 * 109.47043 * 274.99479 * 4 3 2 6 6 H 1.08001 * 119.99786 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00153 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99737 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99926 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47037 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46563 * 120.00319 * 9 7 5 12 12 H 1.48497 * 109.47104 * 240.00136 * 9 7 5 13 13 S 1.65603 * 119.99947 * 95.85188 * 3 2 1 14 14 O 1.42100 * 106.40293 * 337.18534 * 13 3 2 15 15 O 1.42102 * 106.40205 * 204.26605 * 13 3 2 16 16 N 1.65600 * 107.21742 * 90.72689 * 13 3 2 17 17 C 1.46498 * 120.00071 * 68.29813 * 16 13 3 18 18 H 1.09001 * 111.02112 * 334.13698 * 17 16 13 19 19 C 1.55569 * 111.22319 * 209.83381 * 17 16 13 20 20 C 1.54384 * 102.27285 * 207.98653 * 19 17 16 21 21 O 1.43233 * 107.58973 * 21.35258 * 20 19 17 22 22 C 1.43645 * 109.97157 * 1.71502 * 21 20 19 23 23 H 1.08997 * 109.47256 * 185.02213 * 1 2 3 24 24 H 1.08997 * 109.47397 * 305.02411 * 1 2 3 25 25 H 1.08997 * 109.46525 * 65.02002 * 1 2 3 26 26 H 1.08999 * 109.47625 * 239.99664 * 2 1 3 27 27 H 1.09007 * 109.47312 * 119.99509 * 2 1 3 28 28 H 1.08997 * 109.47364 * 34.99796 * 4 3 2 29 29 H 1.09000 * 109.46904 * 155.00014 * 4 3 2 30 30 H 0.96999 * 119.99514 * 180.02562 * 8 7 5 31 31 H 0.97002 * 119.99530 * 248.30290 * 16 13 3 32 32 H 1.08994 * 110.83905 * 89.78704 * 19 17 16 33 33 H 1.09003 * 110.83526 * 326.18009 * 19 17 16 34 34 H 1.08998 * 109.82695 * 261.84333 * 20 19 17 35 35 H 1.09005 * 109.90662 * 140.91485 * 20 19 17 36 36 H 1.09001 * 110.30897 * 94.48495 * 22 21 20 37 37 H 1.09001 * 110.31147 * 216.55459 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1405 2.1149 -1.2621 5 6 3.4683 1.7982 -1.9008 6 1 4.1524 1.1180 -1.4154 7 6 3.8091 2.3759 -3.1054 8 7 2.9757 3.2038 -3.6968 9 14 5.4552 1.9838 -3.8968 10 1 6.2037 1.0324 -3.0367 11 1 5.2296 1.3723 -5.2311 12 1 6.2403 3.2347 -4.0519 13 16 2.4323 2.1131 1.4267 14 8 1.7345 1.4185 2.4513 15 8 2.3062 3.5120 1.2114 16 7 4.0431 1.8219 1.6777 17 6 5.0438 2.4379 0.8030 18 1 4.6226 2.6597 -0.1776 19 6 6.3109 1.5437 0.6799 20 6 7.4190 2.5816 0.3997 21 8 6.9484 3.8528 0.8624 22 6 5.6466 3.7089 1.4523 23 1 -0.3633 -1.0237 0.0900 24 1 -0.3634 0.5898 0.8415 25 1 -0.3632 0.4340 -0.9315 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.3345 1.8194 -1.9337 29 1 2.0772 3.1856 -1.0675 30 1 3.2154 3.6099 -4.5445 31 1 4.3239 1.2434 2.4040 32 1 6.2138 0.8459 -0.1518 33 1 6.5032 1.0132 1.6125 34 1 7.6193 2.6287 -0.6706 35 1 8.3285 2.3070 0.9343 36 1 5.7324 3.5783 2.5311 37 1 5.0300 4.5786 1.2251 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336885733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:11 Heat of formation + Delta-G solvation = -128.030333 kcal Electronic energy + Delta-G solvation = -21693.269142 eV Core-core repulsion = 18404.283934 eV Total energy + Delta-G solvation = -3288.985208 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.12908 -36.69510 -36.09767 -35.25210 -34.51904 -32.81151 -30.31078 -29.99719 -27.99105 -26.69869 -23.21015 -22.21512 -21.78675 -21.28260 -18.99565 -17.36179 -16.96185 -16.60281 -16.27349 -15.93453 -15.33786 -14.76768 -14.54283 -14.03260 -13.51864 -13.38506 -13.29082 -12.98668 -12.54909 -12.14042 -12.02687 -11.84209 -11.73818 -11.51747 -11.39083 -11.35217 -11.18474 -11.13471 -11.00230 -10.62230 -10.54585 -10.35956 -10.10953 -9.81405 -9.38862 -9.03269 -8.59096 -8.13263 -6.21413 -4.28910 1.23782 3.17967 3.24534 3.27933 3.43280 4.07207 4.21624 4.27310 4.74117 4.94743 5.08685 5.18512 5.22444 5.37967 5.43888 5.55110 5.68096 5.73891 5.83321 5.92525 5.99315 6.06474 6.08601 6.27574 6.29635 6.58867 6.63403 6.67071 7.15641 7.25214 7.31165 7.41305 7.60589 7.76182 8.04914 8.76167 9.37067 10.85992 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.010766 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.783710 B = 2600.213401 C = 4006.950606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 N -0.992 5.992 4 C 0.241 3.759 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.887 3.113 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.279 1.279 13 S 2.784 3.216 14 O -0.999 6.999 15 O -0.976 6.976 16 N -1.116 6.116 17 C 0.109 3.891 18 H 0.149 0.851 19 C -0.159 4.159 20 C 0.052 3.948 21 O -0.382 6.382 22 C 0.036 3.964 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.052 0.948 30 H 0.266 0.734 31 H 0.406 0.594 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 -5.584 7.598 10.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.834 5.834 4 C 0.119 3.881 5 C -0.588 4.588 6 H 0.085 0.915 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.714 3.286 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.205 1.205 13 S 2.792 3.208 14 O -0.983 6.983 15 O -0.960 6.960 16 N -0.872 5.872 17 C 0.001 3.999 18 H 0.166 0.834 19 C -0.198 4.198 20 C -0.025 4.025 21 O -0.301 6.301 22 C -0.043 4.043 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.238 0.762 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.108 -4.630 7.820 9.605 hybrid contribution 1.222 -0.972 -0.533 1.650 sum 4.330 -5.602 7.287 10.160 Atomic orbital electron populations 1.22192 0.96904 1.01329 1.02372 1.20974 0.93689 0.82809 1.02109 1.57719 1.78345 1.22922 1.24370 1.19244 0.97471 0.92213 0.79154 1.21605 1.02808 1.28184 1.06180 0.91524 1.24961 0.97118 0.94650 0.96829 1.69935 1.35698 1.28996 1.17251 0.86620 0.83900 0.78505 0.79562 1.19445 1.20873 1.20511 1.01822 0.72543 0.73768 0.72697 1.93551 1.71501 1.75726 1.57569 1.93589 1.85557 1.30967 1.85852 1.55960 1.25574 1.63283 1.42428 1.23010 0.89389 0.91132 0.96385 0.83412 1.23375 0.94423 0.98803 1.03197 1.23042 0.96406 0.83249 0.99820 1.88397 1.33226 1.29349 1.79083 1.23894 0.83754 0.99762 0.96847 0.92364 0.92730 0.92097 0.90218 0.91882 0.94233 0.93038 0.92440 0.76176 0.89042 0.90649 0.91067 0.91721 0.92462 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 10.23 37.16 0.38 -2.21 16 2 C 0.13 2.17 6.08 -4.04 -0.02 2.15 16 3 N -0.99 -19.41 2.83 -115.66 -0.33 -19.74 16 4 C 0.24 5.65 5.36 -5.19 -0.03 5.63 16 5 C -0.55 -13.27 7.00 -34.44 -0.24 -13.51 16 6 H 0.07 1.53 7.18 -52.49 -0.38 1.15 16 7 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.88 -24.12 13.29 55.43 0.74 -23.38 16 9 Si 0.89 19.56 29.54 -169.99 -5.02 14.54 16 10 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 S 2.78 53.03 6.08 -107.50 -0.65 52.38 16 14 O -1.00 -19.65 17.07 -57.17 -0.98 -20.63 16 15 O -0.98 -21.84 16.40 -57.17 -0.94 -22.78 16 16 N -1.12 -17.57 5.72 -2.87 -0.02 -17.58 16 17 C 0.11 1.85 3.33 -65.54 -0.22 1.63 16 18 H 0.15 3.02 4.85 -51.93 -0.25 2.76 16 19 C -0.16 -2.25 6.71 -24.64 -0.17 -2.42 16 20 C 0.05 0.76 7.80 37.88 0.30 1.05 16 21 O -0.38 -6.58 11.36 -35.23 -0.40 -6.98 16 22 C 0.04 0.60 7.47 38.18 0.29 0.88 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 27 H 0.06 0.93 7.56 -51.92 -0.39 0.54 16 28 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 29 H 0.05 1.34 6.92 -51.93 -0.36 0.98 16 30 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.41 5.12 8.76 -34.47 -0.30 4.81 16 32 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.07 0.88 8.03 -51.93 -0.42 0.46 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 315.99 15.07 4.76 4.76 Total: -1.00 -29.79 315.99 -8.11 -37.89 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.46 Total: 6.65 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 0.19 Total: -5.14 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: 0.39 Total: -60.70 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -2.31 Total: -50.39 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 16 Polarization: 53.03 SS G_CDS: -0.65 Total: 52.38 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.79 -8.11 -37.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336885733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.136 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds