Wall clock time and date at job start Tue Mar 31 2020 01:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47179 * 2 1 4 4 C 1.46498 * 120.00355 * 274.99723 * 3 2 1 5 5 C 1.50698 * 109.47248 * 276.76391 * 4 3 2 6 6 H 1.08002 * 119.99904 * 4.96093 * 5 4 3 7 7 C 1.37875 * 120.00347 * 184.96227 * 5 4 3 8 8 N 1.31519 * 119.99530 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00363 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46882 * 59.99815 * 9 7 5 11 11 H 1.48496 * 109.47235 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47106 * 300.00045 * 9 7 5 13 13 S 1.65602 * 119.99970 * 94.99973 * 3 2 1 14 14 O 1.42105 * 106.40117 * 342.01194 * 13 3 2 15 15 O 1.42099 * 106.40251 * 209.09515 * 13 3 2 16 16 N 1.65600 * 107.22216 * 95.55455 * 13 3 2 17 17 C 1.46503 * 119.99793 * 295.84035 * 16 13 3 18 18 H 1.09001 * 110.43474 * 26.85991 * 17 16 13 19 19 C 1.54806 * 110.60158 * 149.48408 * 17 16 13 20 20 C 1.54990 * 102.09239 * 139.61148 * 19 17 16 21 21 O 1.44575 * 103.58870 * 323.05460 * 20 19 17 22 22 C 1.43746 * 106.86379 * 39.87827 * 21 20 19 23 23 H 1.09002 * 109.46890 * 60.00219 * 1 2 3 24 24 H 1.08994 * 109.47272 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47217 * 300.00324 * 1 2 3 26 26 H 1.08998 * 109.47217 * 239.99676 * 2 1 3 27 27 H 1.09002 * 109.46890 * 119.99781 * 2 1 3 28 28 H 1.09001 * 109.46725 * 36.76197 * 4 3 2 29 29 H 1.09005 * 109.47491 * 156.76161 * 4 3 2 30 30 H 0.97008 * 119.99702 * 179.97438 * 8 7 5 31 31 H 0.96994 * 120.00133 * 115.84129 * 16 13 3 32 32 H 1.09005 * 110.90911 * 257.81175 * 19 17 16 33 33 H 1.09008 * 110.90570 * 21.37768 * 19 17 16 34 34 H 1.08997 * 110.61696 * 81.48219 * 20 19 17 35 35 H 1.09003 * 110.61958 * 204.31695 * 20 19 17 36 36 H 1.09001 * 109.87707 * 214.16772 * 22 21 20 37 37 H 1.09004 * 109.87968 * 93.17492 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 3.4763 1.7554 -1.9035 6 1 4.1069 0.9995 -1.4591 7 6 3.8773 2.3972 -3.0560 8 7 3.1092 3.3173 -3.5975 9 14 5.5113 1.9598 -3.8485 10 1 5.5123 0.5218 -4.2196 11 1 5.7076 2.7861 -5.0666 12 1 6.6133 2.2241 -2.8889 13 16 2.4122 2.1201 1.4287 14 8 1.7912 1.3615 2.4574 15 8 2.1800 3.5092 1.2393 16 7 4.0453 1.9434 1.6382 17 6 4.6215 0.6073 1.8096 18 1 3.9952 -0.1421 1.3256 19 6 6.0613 0.5582 1.2429 20 6 6.7987 -0.2978 2.3039 21 8 6.1999 0.1185 3.5522 22 6 4.7932 0.2819 3.3059 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.3439 1.8331 -1.9338 29 1 2.1236 3.1811 -1.0716 30 1 3.3915 3.7691 -4.4082 31 1 4.6205 2.7244 1.6475 32 1 6.0793 0.0702 0.2684 33 1 6.4900 1.5586 1.1830 34 1 6.6220 -1.3594 2.1309 35 1 7.8671 -0.0816 2.2965 36 1 4.4038 1.1010 3.9105 37 1 4.2650 -0.6405 3.5477 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336885744.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:13 Heat of formation + Delta-G solvation = -126.748752 kcal Electronic energy + Delta-G solvation = -21414.699523 eV Core-core repulsion = 18125.769888 eV Total energy + Delta-G solvation = -3288.929634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.37490 -36.69299 -36.08028 -35.25767 -34.59256 -32.76244 -30.43929 -29.98212 -28.10849 -26.67422 -23.21557 -22.71921 -21.74867 -21.29275 -18.97970 -17.24943 -16.95482 -16.69189 -16.39354 -16.01219 -15.53429 -15.14933 -14.54603 -14.15804 -13.81597 -13.36488 -13.03923 -12.97058 -12.68125 -12.15779 -12.07028 -11.96463 -11.72084 -11.53666 -11.48755 -11.41032 -11.13364 -11.08891 -11.01671 -10.91093 -10.54250 -10.42537 -10.14844 -9.84124 -9.83015 -9.13866 -8.54443 -8.12223 -6.15564 -4.22474 1.24889 3.20525 3.26119 3.27623 3.42122 3.96439 4.07975 4.31065 4.56913 4.86804 4.90431 5.03547 5.14416 5.18455 5.24250 5.36394 5.46704 5.67992 5.71640 5.77527 5.81211 5.90608 6.04774 6.06161 6.22599 6.32881 6.60878 6.62707 6.82069 7.18363 7.34321 7.42135 7.62031 7.81095 8.10697 8.81865 9.43392 10.92346 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.008818 C = 0.006372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.738901 B = 3174.670936 C = 4392.931903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.127 3.873 3 N -0.991 5.991 4 C 0.246 3.754 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 S 2.784 3.216 14 O -0.998 6.998 15 O -0.980 6.980 16 N -1.114 6.114 17 C 0.131 3.869 18 H 0.097 0.903 19 C -0.157 4.157 20 C 0.045 3.955 21 O -0.380 6.380 22 C 0.032 3.968 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.265 0.735 31 H 0.415 0.585 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.282 -7.801 8.353 11.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.833 5.833 4 C 0.124 3.876 5 C -0.578 4.578 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 S 2.792 3.208 14 O -0.981 6.981 15 O -0.964 6.964 16 N -0.871 5.871 17 C 0.022 3.978 18 H 0.115 0.885 19 C -0.196 4.196 20 C -0.032 4.032 21 O -0.299 6.299 22 C -0.047 4.047 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.249 0.751 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.632 -7.336 8.978 11.889 hybrid contribution 1.307 -0.077 -1.202 1.777 sum 3.939 -7.412 7.776 11.443 Atomic orbital electron populations 1.22191 0.96835 1.01442 1.02382 1.21042 0.93896 0.82993 1.02065 1.57719 1.78515 1.22879 1.24211 1.19183 0.97177 0.92322 0.78919 1.21484 1.04452 1.22137 1.09681 0.92033 1.24973 0.97250 0.94804 0.96976 1.69928 1.37248 1.24768 1.20750 0.86627 0.83920 0.78381 0.78845 1.20241 1.21241 1.20163 1.01801 0.72780 0.73154 0.73062 1.93548 1.74889 1.73248 1.56439 1.93595 1.84101 1.32289 1.86418 1.56059 1.28735 1.12713 1.89626 1.21935 0.96216 0.84712 0.94923 0.88535 1.23415 0.94007 1.02352 0.99840 1.23589 0.98466 0.97943 0.83234 1.88908 1.20246 1.89055 1.31644 1.23784 0.82622 1.01967 0.96338 0.92009 0.92279 0.92757 0.90161 0.91825 0.94657 0.92995 0.92499 0.75121 0.88974 0.89424 0.91997 0.88887 0.89029 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 10.24 37.16 0.38 -2.19 16 2 C 0.13 2.08 5.84 -4.04 -0.02 2.06 16 3 N -0.99 -19.51 2.83 -115.67 -0.33 -19.84 16 4 C 0.25 5.89 5.45 -5.20 -0.03 5.86 16 5 C -0.54 -13.45 9.37 -34.44 -0.32 -13.77 16 6 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 9 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 13 S 2.78 53.43 6.04 -107.50 -0.65 52.78 16 14 O -1.00 -19.36 16.70 -57.17 -0.95 -20.32 16 15 O -0.98 -22.42 16.81 -57.17 -0.96 -23.38 16 16 N -1.11 -17.86 5.53 -3.59 -0.02 -17.88 16 17 C 0.13 1.83 3.60 -66.41 -0.24 1.59 16 18 H 0.10 1.29 7.02 -51.93 -0.36 0.93 16 19 C -0.16 -1.97 6.88 -24.73 -0.17 -2.14 16 20 C 0.04 0.49 7.72 38.21 0.29 0.79 16 21 O -0.38 -5.20 11.54 -35.23 -0.41 -5.61 16 22 C 0.03 0.42 7.50 37.73 0.28 0.71 16 23 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 27 H 0.06 0.92 6.69 -51.93 -0.35 0.57 16 28 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 29 H 0.05 1.39 6.97 -51.93 -0.36 1.03 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.42 6.21 8.61 -34.47 -0.30 5.91 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.12 7.83 -51.92 -0.41 0.71 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.27 7.93 -51.93 -0.41 0.86 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 320.01 15.07 4.82 4.82 Total: -1.00 -31.13 320.01 -8.24 -39.37 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.53 Total: 4.79 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 0.08 Total: -5.53 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.39 Total: -61.91 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -2.32 Total: -49.31 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 53.43 SS G_CDS: -0.65 Total: 52.78 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.13 -8.24 -39.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336885744.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.383 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds