Wall clock time and date at job start Tue Mar 31 2020 01:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47179 * 2 1 4 4 C 1.46498 * 120.00355 * 274.99723 * 3 2 1 5 5 C 1.50698 * 109.47248 * 276.76391 * 4 3 2 6 6 H 1.08002 * 119.99904 * 4.96093 * 5 4 3 7 7 C 1.37875 * 120.00347 * 184.96227 * 5 4 3 8 8 N 1.31519 * 119.99530 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00363 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46882 * 59.99815 * 9 7 5 11 11 H 1.48496 * 109.47235 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47106 * 300.00045 * 9 7 5 13 13 S 1.65602 * 119.99970 * 94.99973 * 3 2 1 14 14 O 1.42105 * 106.40117 * 342.01194 * 13 3 2 15 15 O 1.42099 * 106.40251 * 209.09515 * 13 3 2 16 16 N 1.65600 * 107.22216 * 95.55455 * 13 3 2 17 17 C 1.46503 * 119.99793 * 295.84035 * 16 13 3 18 18 H 1.09001 * 110.43474 * 26.85991 * 17 16 13 19 19 C 1.54806 * 110.60158 * 149.48408 * 17 16 13 20 20 C 1.54990 * 102.09239 * 139.61148 * 19 17 16 21 21 O 1.44575 * 103.58870 * 323.05460 * 20 19 17 22 22 C 1.43746 * 106.86379 * 39.87827 * 21 20 19 23 23 H 1.09002 * 109.46890 * 60.00219 * 1 2 3 24 24 H 1.08994 * 109.47272 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47217 * 300.00324 * 1 2 3 26 26 H 1.08998 * 109.47217 * 239.99676 * 2 1 3 27 27 H 1.09002 * 109.46890 * 119.99781 * 2 1 3 28 28 H 1.09001 * 109.46725 * 36.76197 * 4 3 2 29 29 H 1.09005 * 109.47491 * 156.76161 * 4 3 2 30 30 H 0.97008 * 119.99702 * 179.97438 * 8 7 5 31 31 H 0.96994 * 120.00133 * 115.84129 * 16 13 3 32 32 H 1.09005 * 110.90911 * 257.81175 * 19 17 16 33 33 H 1.09008 * 110.90570 * 21.37768 * 19 17 16 34 34 H 1.08997 * 110.61696 * 81.48219 * 20 19 17 35 35 H 1.09003 * 110.61958 * 204.31695 * 20 19 17 36 36 H 1.09001 * 109.87707 * 214.16772 * 22 21 20 37 37 H 1.09004 * 109.87968 * 93.17492 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 3.4763 1.7554 -1.9035 6 1 4.1069 0.9995 -1.4591 7 6 3.8773 2.3972 -3.0560 8 7 3.1092 3.3173 -3.5975 9 14 5.5113 1.9598 -3.8485 10 1 5.5123 0.5218 -4.2196 11 1 5.7076 2.7861 -5.0666 12 1 6.6133 2.2241 -2.8889 13 16 2.4122 2.1201 1.4287 14 8 1.7912 1.3615 2.4574 15 8 2.1800 3.5092 1.2393 16 7 4.0453 1.9434 1.6382 17 6 4.6215 0.6073 1.8096 18 1 3.9952 -0.1421 1.3256 19 6 6.0613 0.5582 1.2429 20 6 6.7987 -0.2978 2.3039 21 8 6.1999 0.1185 3.5522 22 6 4.7932 0.2819 3.3059 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.3439 1.8331 -1.9338 29 1 2.1236 3.1811 -1.0716 30 1 3.3915 3.7691 -4.4082 31 1 4.6205 2.7244 1.6475 32 1 6.0793 0.0702 0.2684 33 1 6.4900 1.5586 1.1830 34 1 6.6220 -1.3594 2.1309 35 1 7.8671 -0.0816 2.2965 36 1 4.4038 1.1010 3.9105 37 1 4.2650 -0.6405 3.5477 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336885744.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:13 Heat of formation + Delta-G solvation = -150.818323 kcal Electronic energy + Delta-G solvation = -21415.743257 eV Core-core repulsion = 18125.769888 eV Total energy + Delta-G solvation = -3289.973369 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.39151 -38.30920 -37.67596 -36.89749 -35.78722 -34.66915 -31.54339 -31.44042 -29.17923 -28.48799 -24.94739 -23.67834 -23.27439 -22.37749 -20.44596 -18.75081 -18.53729 -18.24945 -17.89030 -17.11502 -16.99572 -16.38953 -16.11917 -15.51949 -15.15496 -14.74265 -14.65771 -14.10413 -13.90935 -13.75708 -13.59170 -13.33105 -13.20267 -13.16750 -13.05165 -12.73459 -12.66782 -12.51035 -12.38207 -12.21684 -12.08311 -11.90572 -11.71666 -11.59052 -10.88517 -10.55248 -10.31375 -9.78547 -8.14128 -6.27928 -0.28928 1.45932 1.47281 1.54673 1.95651 2.44782 2.59152 3.00883 3.18078 3.42076 3.51708 3.89986 3.93205 4.03328 4.16046 4.32934 4.35724 4.44066 4.50483 4.71798 4.80054 4.86657 4.93931 4.99555 5.06291 5.15309 5.20967 5.28556 5.41270 5.52894 5.77865 5.85824 5.91541 6.12450 6.13219 6.84831 7.42448 8.93880 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.008818 C = 0.006372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.738901 B = 3174.670936 C = 4392.931903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.117 3.883 3 N -0.994 5.994 4 C 0.261 3.739 5 C -0.535 4.535 6 H 0.078 0.922 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.960 3.040 10 H -0.264 1.264 11 H -0.294 1.294 12 H -0.263 1.263 13 S 2.798 3.202 14 O -0.998 6.998 15 O -1.022 7.022 16 N -1.108 6.108 17 C 0.120 3.880 18 H 0.106 0.894 19 C -0.157 4.157 20 C 0.046 3.954 21 O -0.396 6.396 22 C 0.033 3.967 23 H 0.046 0.954 24 H 0.092 0.908 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.018 0.982 29 H 0.015 0.985 30 H 0.264 0.736 31 H 0.420 0.580 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.873 -10.031 8.813 14.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.008 4.008 3 N -0.836 5.836 4 C 0.137 3.863 5 C -0.575 4.575 6 H 0.096 0.904 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.785 3.215 10 H -0.189 1.189 11 H -0.221 1.221 12 H -0.188 1.188 13 S 2.806 3.194 14 O -0.982 6.982 15 O -1.007 7.007 16 N -0.868 5.868 17 C 0.012 3.988 18 H 0.123 0.877 19 C -0.196 4.196 20 C -0.030 4.030 21 O -0.315 6.315 22 C -0.046 4.046 23 H 0.065 0.935 24 H 0.111 0.889 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.107 0.893 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.072 0.928 31 H 0.255 0.745 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.221 -9.600 9.465 14.126 hybrid contribution 0.790 0.577 -1.277 1.608 sum 5.011 -9.023 8.188 13.175 Atomic orbital electron populations 1.22195 0.96041 1.03304 1.01246 1.21347 0.94722 0.81266 1.03495 1.57603 1.79239 1.24075 1.22634 1.18713 0.96577 0.90738 0.80235 1.21818 1.04598 1.21765 1.09289 0.90364 1.25864 1.00791 0.94744 0.97819 1.70084 1.39389 1.26381 1.21365 0.85571 0.79804 0.78440 0.77643 1.18878 1.22056 1.18809 1.01209 0.73392 0.71984 0.72778 1.93539 1.75524 1.72962 1.56159 1.93537 1.85187 1.35028 1.86904 1.55809 1.27585 1.14146 1.89298 1.22233 0.97247 0.83430 0.95846 0.87660 1.23436 0.93031 1.02592 1.00561 1.23767 0.99085 0.98683 0.81498 1.88894 1.20257 1.89347 1.32992 1.23750 0.82941 1.02338 0.95556 0.93454 0.88935 0.93588 0.89717 0.89283 0.96395 0.96646 0.92750 0.74534 0.88444 0.89915 0.90035 0.87146 0.89994 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.90 10.24 71.98 0.74 -4.16 16 2 C 0.12 3.64 5.84 86.38 0.50 4.14 16 3 N -0.99 -38.75 2.83 -519.86 -1.47 -40.22 16 4 C 0.26 12.74 5.45 85.63 0.47 13.20 16 5 C -0.54 -26.47 9.37 25.60 0.24 -26.23 16 6 H 0.08 3.53 7.81 -2.91 -0.02 3.50 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -53.26 13.29 21.45 0.28 -52.98 16 9 Si 0.96 40.25 29.54 68.60 2.03 42.28 16 10 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 11 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 13 S 2.80 106.66 6.04 -56.49 -0.34 106.31 16 14 O -1.00 -37.61 16.70 -128.00 -2.14 -39.75 16 15 O -1.02 -47.96 16.81 -128.00 -2.15 -50.12 16 16 N -1.11 -34.40 5.53 -165.28 -0.91 -35.31 16 17 C 0.12 3.09 3.60 45.98 0.17 3.25 16 18 H 0.11 2.51 7.02 -2.39 -0.02 2.49 16 19 C -0.16 -3.51 6.88 31.89 0.22 -3.29 16 20 C 0.05 0.87 7.72 72.66 0.56 1.43 16 21 O -0.40 -9.84 11.54 -148.98 -1.72 -11.56 16 22 C 0.03 0.81 7.50 72.35 0.54 1.35 16 23 H 0.05 1.49 8.13 -2.39 -0.02 1.47 16 24 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 26 H 0.08 2.57 8.11 -2.39 -0.02 2.55 16 27 H 0.09 2.32 6.69 -2.39 -0.02 2.31 16 28 H 0.02 0.93 8.11 -2.39 -0.02 0.91 16 29 H 0.02 0.87 6.97 -2.38 -0.02 0.85 16 30 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 31 H 0.42 12.32 8.61 -96.75 -0.83 11.48 16 32 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.08 1.93 7.83 -2.38 -0.02 1.91 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 2.16 7.93 -2.39 -0.02 2.14 16 37 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -66.60 320.01 -2.29 -68.89 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.23 Total: 21.92 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 3.90 Total: -9.48 kcal Atomic # 7 Polarization: -126.41 SS G_CDS: -2.10 Total: -128.51 kcal Atomic # 8 Polarization: -95.42 SS G_CDS: -6.01 Total: -101.42 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Atomic # 16 Polarization: 106.66 SS G_CDS: -0.34 Total: 106.31 kcal Total: -66.60 -2.29 -68.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336885744.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.925 kcal (2) G-P(sol) polarization free energy of solvation -66.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds