Wall clock time and date at job start Tue Mar 31 2020 01:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.46827 * 2 1 4 4 C 1.46494 * 120.00108 * 274.99665 * 3 2 1 5 5 C 1.50707 * 109.47192 * 275.00409 * 4 3 2 6 6 H 1.07999 * 119.99846 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00125 * 179.97438 * 5 4 3 8 8 N 1.31523 * 120.00152 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00309 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46921 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47445 * 120.00048 * 9 7 5 12 12 H 1.48498 * 109.47278 * 240.00454 * 9 7 5 13 13 S 1.65599 * 120.00151 * 95.00265 * 3 2 1 14 14 O 1.42103 * 106.40158 * 336.45638 * 13 3 2 15 15 O 1.42097 * 106.40367 * 203.53683 * 13 3 2 16 16 N 1.65597 * 107.22129 * 89.99231 * 13 3 2 17 17 C 1.47584 * 134.48956 * 90.00176 * 16 13 3 18 18 C 1.53947 * 86.11565 * 204.63941 * 17 16 13 19 19 O 1.42903 * 113.74176 * 222.04694 * 18 17 16 20 20 C 1.42901 * 113.99636 * 210.00297 * 19 18 17 21 21 C 1.47577 * 134.49748 * 270.00218 * 16 13 3 22 22 H 1.09003 * 109.46966 * 60.00437 * 1 2 3 23 23 H 1.09000 * 109.46942 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47218 * 300.00135 * 1 2 3 25 25 H 1.08993 * 109.47218 * 239.99865 * 2 1 3 26 26 H 1.09003 * 109.46966 * 119.99562 * 2 1 3 27 27 H 1.09002 * 109.47461 * 34.99839 * 4 3 2 28 28 H 1.08996 * 109.47611 * 155.00604 * 4 3 2 29 29 H 0.96999 * 119.99654 * 179.97438 * 8 7 5 30 30 H 1.09001 * 113.76908 * 90.33861 * 17 16 13 31 31 H 1.08997 * 113.76763 * 318.94123 * 17 16 13 32 32 H 1.08997 * 113.73914 * 90.73986 * 18 17 16 33 33 H 1.08997 * 109.47256 * 299.99484 * 20 19 18 34 34 H 1.08993 * 109.47127 * 60.00403 * 20 19 18 35 35 H 1.09007 * 109.46624 * 179.97438 * 20 19 18 36 36 H 1.08995 * 113.76947 * 41.05426 * 21 16 13 37 37 H 1.09005 * 113.76708 * 269.66338 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 3.4949 1.7888 -1.8823 6 1 4.1724 1.1117 -1.3835 7 6 3.8526 2.3605 -3.0847 8 7 3.0277 3.1855 -3.6920 9 14 5.5090 1.9635 -3.8517 10 1 6.2455 1.0164 -2.9764 11 1 5.3014 1.3458 -5.1860 12 1 6.2973 3.2130 -4.0019 13 16 2.4122 2.1202 1.4286 14 8 1.6869 1.4415 2.4448 15 8 2.3057 3.5186 1.1998 16 7 4.0144 1.8137 1.7138 17 6 5.2757 2.4971 1.3675 18 6 5.9405 1.1156 1.5065 19 8 7.1977 1.1477 2.1851 20 6 8.1102 0.1307 1.7665 21 6 4.7544 0.7475 2.4162 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.3618 1.8097 -1.9453 28 1 2.0922 3.1802 -1.0756 29 1 3.2796 3.5880 -4.5378 30 1 5.6035 3.2197 2.1149 31 1 5.2959 2.8942 0.3526 32 1 5.9726 0.5484 0.5763 33 1 7.6707 -0.8497 1.9500 34 1 8.3163 0.2432 0.7022 35 1 9.0399 0.2234 2.3280 36 1 4.3584 -0.2524 2.2388 37 1 4.9290 0.9560 3.4718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336945557.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:48 Heat of formation + Delta-G solvation = -84.031829 kcal Electronic energy + Delta-G solvation = -21300.285687 eV Core-core repulsion = 18013.208398 eV Total energy + Delta-G solvation = -3287.077289 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.33215 -36.63716 -36.29301 -36.03292 -35.20606 -32.74925 -29.96052 -28.06071 -26.65374 -26.11723 -25.85413 -23.16050 -21.76505 -20.84786 -18.29759 -17.36148 -17.04938 -16.57357 -16.31518 -15.84993 -15.18543 -14.92053 -14.58133 -14.07338 -13.79460 -13.36106 -13.23998 -12.95439 -12.44505 -12.35173 -12.10840 -11.99606 -11.70913 -11.50796 -11.43480 -11.34091 -11.15132 -11.09715 -10.99874 -10.96615 -10.53515 -10.41097 -10.08047 -9.79898 -9.49055 -8.78050 -8.53439 -8.08633 -6.15026 -4.21838 1.17624 3.19705 3.26532 3.29055 3.38042 3.86387 4.10132 4.31539 4.52799 4.80352 4.96015 5.12591 5.18923 5.35302 5.39052 5.40836 5.56339 5.62311 5.70393 5.75663 5.80441 5.97828 6.05343 6.07381 6.23943 6.30199 6.63320 6.67152 6.76917 7.21613 7.33034 7.41848 7.63439 7.82090 8.11921 8.82874 9.43946 10.93056 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.011527 B = 0.010273 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.392126 B = 2724.834683 C = 4353.119516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.989 5.989 4 C 0.244 3.756 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 S 2.805 3.195 14 O -0.994 6.994 15 O -0.973 6.973 16 N -1.039 6.039 17 C 0.133 3.867 18 C 0.052 3.948 19 O -0.379 6.379 20 C 0.030 3.970 21 C 0.114 3.886 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.039 0.961 28 H 0.050 0.950 29 H 0.264 0.736 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.310 -7.458 8.550 12.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.830 5.830 4 C 0.122 3.878 5 C -0.578 4.578 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 S 2.815 3.185 14 O -0.979 6.979 15 O -0.957 6.957 16 N -0.880 5.880 17 C 0.008 3.992 18 C -0.008 4.008 19 O -0.297 6.297 20 C -0.067 4.067 21 C -0.013 4.013 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.523 -6.640 9.036 12.091 hybrid contribution 1.066 -0.645 -1.093 1.657 sum 5.589 -7.285 7.944 12.141 Atomic orbital electron populations 1.22205 0.96854 1.01407 1.02429 1.20970 0.93722 0.82928 1.01969 1.57795 1.77928 1.22994 1.24294 1.19211 0.97361 0.92270 0.78977 1.21568 1.02230 1.27985 1.06001 0.91993 1.24966 0.97213 0.94858 0.96906 1.69945 1.35881 1.29767 1.17033 0.86540 0.83895 0.78241 0.79273 1.19788 1.20958 1.20801 1.01173 0.71371 0.73243 0.72734 1.93533 1.69854 1.76655 1.57826 1.93573 1.85316 1.30802 1.86043 1.60467 1.21872 1.37041 1.68602 1.22858 0.79283 0.94461 1.02630 1.24562 0.82014 0.98557 0.95653 1.87916 1.25248 1.53299 1.63216 1.22793 0.93262 0.90875 0.99768 1.23109 0.89480 0.91365 0.97338 0.92025 0.92322 0.92647 0.90247 0.92099 0.94297 0.93161 0.92611 0.89653 0.88300 0.87933 0.94018 0.93783 0.89874 0.90489 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 10.24 37.16 0.38 -2.31 16 2 C 0.13 2.27 6.06 -4.04 -0.02 2.24 16 3 N -0.99 -20.44 2.82 -115.66 -0.33 -20.77 16 4 C 0.24 5.99 5.43 -5.19 -0.03 5.96 16 5 C -0.54 -13.69 9.38 -34.44 -0.32 -14.02 16 6 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 9 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 S 2.80 57.77 6.61 -107.50 -0.71 57.06 16 14 O -0.99 -20.92 17.08 -57.17 -0.98 -21.90 16 15 O -0.97 -23.38 16.66 -57.17 -0.95 -24.33 16 16 N -1.04 -18.19 4.17 -119.01 -0.50 -18.69 16 17 C 0.13 2.16 8.80 -2.97 -0.03 2.14 16 18 C 0.05 0.73 4.50 -25.81 -0.12 0.62 16 19 O -0.38 -5.00 10.73 -35.23 -0.38 -5.38 16 20 C 0.03 0.30 10.85 101.05 1.10 1.39 16 21 C 0.11 1.58 8.80 -2.98 -0.03 1.56 16 22 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.08 1.36 8.11 -51.93 -0.42 0.93 16 26 H 0.06 0.95 7.61 -51.93 -0.40 0.55 16 27 H 0.04 0.99 8.11 -51.93 -0.42 0.57 16 28 H 0.05 1.37 6.91 -51.93 -0.36 1.01 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 32 H 0.10 1.43 7.87 -51.93 -0.41 1.02 16 33 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 327.90 15.07 4.94 4.94 Total: -1.00 -31.57 327.90 -8.13 -39.70 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.78 Total: -0.57 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 0.84 Total: -0.84 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: -0.09 Total: -63.74 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -2.31 Total: -51.60 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 57.77 SS G_CDS: -0.71 Total: 57.06 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.57 -8.13 -39.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336945557.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.335 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds