Wall clock time and date at job start Tue Mar 31 2020 01:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.46827 * 2 1 4 4 C 1.46494 * 120.00108 * 274.99665 * 3 2 1 5 5 C 1.50707 * 109.47192 * 275.00409 * 4 3 2 6 6 H 1.07999 * 119.99846 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00125 * 179.97438 * 5 4 3 8 8 N 1.31523 * 120.00152 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00309 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46921 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47445 * 120.00048 * 9 7 5 12 12 H 1.48498 * 109.47278 * 240.00454 * 9 7 5 13 13 S 1.65599 * 120.00151 * 95.00265 * 3 2 1 14 14 O 1.42103 * 106.40158 * 336.45638 * 13 3 2 15 15 O 1.42097 * 106.40367 * 203.53683 * 13 3 2 16 16 N 1.65597 * 107.22129 * 89.99231 * 13 3 2 17 17 C 1.47584 * 134.48956 * 90.00176 * 16 13 3 18 18 C 1.53947 * 86.11565 * 204.63941 * 17 16 13 19 19 O 1.42903 * 113.74176 * 222.04694 * 18 17 16 20 20 C 1.42901 * 113.99636 * 210.00297 * 19 18 17 21 21 C 1.47577 * 134.49748 * 270.00218 * 16 13 3 22 22 H 1.09003 * 109.46966 * 60.00437 * 1 2 3 23 23 H 1.09000 * 109.46942 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47218 * 300.00135 * 1 2 3 25 25 H 1.08993 * 109.47218 * 239.99865 * 2 1 3 26 26 H 1.09003 * 109.46966 * 119.99562 * 2 1 3 27 27 H 1.09002 * 109.47461 * 34.99839 * 4 3 2 28 28 H 1.08996 * 109.47611 * 155.00604 * 4 3 2 29 29 H 0.96999 * 119.99654 * 179.97438 * 8 7 5 30 30 H 1.09001 * 113.76908 * 90.33861 * 17 16 13 31 31 H 1.08997 * 113.76763 * 318.94123 * 17 16 13 32 32 H 1.08997 * 113.73914 * 90.73986 * 18 17 16 33 33 H 1.08997 * 109.47256 * 299.99484 * 20 19 18 34 34 H 1.08993 * 109.47127 * 60.00403 * 20 19 18 35 35 H 1.09007 * 109.46624 * 179.97438 * 20 19 18 36 36 H 1.08995 * 113.76947 * 41.05426 * 21 16 13 37 37 H 1.09005 * 113.76708 * 269.66338 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 3.4949 1.7888 -1.8823 6 1 4.1724 1.1117 -1.3835 7 6 3.8526 2.3605 -3.0847 8 7 3.0277 3.1855 -3.6920 9 14 5.5090 1.9635 -3.8517 10 1 6.2455 1.0164 -2.9764 11 1 5.3014 1.3458 -5.1860 12 1 6.2973 3.2130 -4.0019 13 16 2.4122 2.1202 1.4286 14 8 1.6869 1.4415 2.4448 15 8 2.3057 3.5186 1.1998 16 7 4.0144 1.8137 1.7138 17 6 5.2757 2.4971 1.3675 18 6 5.9405 1.1156 1.5065 19 8 7.1977 1.1477 2.1851 20 6 8.1102 0.1307 1.7665 21 6 4.7544 0.7475 2.4162 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.3618 1.8097 -1.9453 28 1 2.0922 3.1802 -1.0756 29 1 3.2796 3.5880 -4.5378 30 1 5.6035 3.2197 2.1149 31 1 5.2959 2.8942 0.3526 32 1 5.9726 0.5484 0.5763 33 1 7.6707 -0.8497 1.9500 34 1 8.3163 0.2432 0.7022 35 1 9.0399 0.2234 2.3280 36 1 4.3584 -0.2524 2.2388 37 1 4.9290 0.9560 3.4718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336945557.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:47 Heat of formation + Delta-G solvation = -107.835356 kcal Electronic energy + Delta-G solvation = -21301.317885 eV Core-core repulsion = 18013.208398 eV Total energy + Delta-G solvation = -3288.109488 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48532 -38.34475 -37.68732 -37.34723 -36.93300 -34.68941 -31.54723 -29.21591 -28.49825 -27.22552 -26.88679 -24.94713 -23.31940 -22.06628 -19.77833 -18.83750 -18.69150 -18.16125 -17.79337 -17.41277 -16.59057 -16.10497 -15.99080 -15.55404 -15.08355 -14.71049 -14.69870 -14.57495 -13.84037 -13.67651 -13.56445 -13.49444 -13.36217 -13.24161 -13.08887 -12.77320 -12.67312 -12.56989 -12.32119 -12.23464 -12.10515 -12.05902 -11.69573 -11.61103 -10.59137 -10.49065 -10.09312 -9.79983 -8.16138 -6.30214 -0.42441 1.43360 1.44655 1.55488 1.89128 2.42220 2.50600 2.89485 3.14396 3.17965 3.52462 3.71799 3.98053 4.08733 4.40393 4.46193 4.49317 4.58767 4.60606 4.64411 4.69357 4.71281 4.85466 4.91437 4.95922 4.99542 5.15888 5.25225 5.39213 5.45374 5.55752 5.76680 5.95901 6.10862 6.26099 6.82203 7.40048 8.92494 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.011527 B = 0.010273 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.392126 B = 2724.834683 C = 4353.119516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.992 5.992 4 C 0.260 3.740 5 C -0.537 4.537 6 H 0.076 0.924 7 C 0.009 3.991 8 N -0.931 5.931 9 Si 0.959 3.041 10 H -0.251 1.251 11 H -0.283 1.283 12 H -0.285 1.285 13 S 2.817 3.183 14 O -1.000 7.000 15 O -1.016 7.016 16 N -1.047 6.047 17 C 0.121 3.879 18 C 0.068 3.932 19 O -0.390 6.390 20 C 0.022 3.978 21 C 0.114 3.886 22 H 0.047 0.953 23 H 0.093 0.907 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.022 0.978 28 H 0.013 0.987 29 H 0.264 0.736 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.149 -9.775 9.382 15.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.833 5.833 4 C 0.136 3.864 5 C -0.576 4.576 6 H 0.094 0.906 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.784 3.216 10 H -0.174 1.174 11 H -0.209 1.209 12 H -0.211 1.211 13 S 2.828 3.172 14 O -0.984 6.984 15 O -1.001 7.001 16 N -0.890 5.890 17 C -0.004 4.004 18 C 0.008 3.992 19 O -0.308 6.308 20 C -0.074 4.074 21 C -0.011 4.011 22 H 0.066 0.934 23 H 0.112 0.888 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.040 0.960 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.357 -8.994 9.898 14.808 hybrid contribution 0.520 0.052 -1.270 1.373 sum 6.877 -8.941 8.628 14.201 Atomic orbital electron populations 1.22200 0.95915 1.03339 1.01269 1.21269 0.94649 0.81150 1.03299 1.57690 1.78719 1.24225 1.22703 1.18746 0.96867 0.90631 0.80173 1.21854 1.02424 1.27520 1.05827 0.90625 1.25857 1.00898 0.94693 0.97618 1.70089 1.38114 1.31275 1.17593 0.85486 0.79441 0.78193 0.78464 1.17439 1.20898 1.21105 1.00519 0.71999 0.72188 0.72489 1.93514 1.70710 1.76444 1.57711 1.93513 1.86359 1.33670 1.86550 1.60208 1.21123 1.38598 1.69038 1.23031 0.79193 0.96330 1.01849 1.24257 0.82677 0.96434 0.95845 1.87896 1.25075 1.54638 1.63177 1.23032 0.93444 0.90755 1.00169 1.23405 0.88465 0.91339 0.97927 0.93392 0.88849 0.93594 0.89861 0.89670 0.96017 0.96873 0.92666 0.88482 0.90457 0.87627 0.92516 0.93769 0.87969 0.88327 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.14 10.24 71.98 0.74 -4.40 16 2 C 0.12 4.03 6.06 86.38 0.52 4.55 16 3 N -0.99 -41.03 2.82 -519.85 -1.47 -42.50 16 4 C 0.26 13.11 5.43 85.64 0.47 13.57 16 5 C -0.54 -27.32 9.38 25.60 0.24 -27.08 16 6 H 0.08 3.56 7.81 -2.91 -0.02 3.54 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -53.66 13.29 21.45 0.28 -53.38 16 9 Si 0.96 40.71 29.54 68.60 2.03 42.74 16 10 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 13 S 2.82 115.90 6.61 -56.49 -0.37 115.53 16 14 O -1.00 -41.03 17.08 -128.00 -2.19 -43.22 16 15 O -1.02 -50.45 16.66 -128.00 -2.13 -52.58 16 16 N -1.05 -35.34 4.17 -534.26 -2.23 -37.57 16 17 C 0.12 3.82 8.80 86.48 0.76 4.58 16 18 C 0.07 1.74 4.50 31.25 0.14 1.88 16 19 O -0.39 -9.13 10.73 -148.98 -1.60 -10.73 16 20 C 0.02 0.36 10.85 113.37 1.23 1.59 16 21 C 0.11 2.83 8.80 86.48 0.76 3.60 16 22 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.08 2.70 8.11 -2.39 -0.02 2.68 16 26 H 0.09 2.41 7.61 -2.39 -0.02 2.39 16 27 H 0.02 1.16 8.11 -2.39 -0.02 1.14 16 28 H 0.01 0.76 6.91 -2.39 -0.02 0.75 16 29 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 30 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.11 2.63 7.87 -2.39 -0.02 2.61 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -68.41 327.90 -1.31 -69.72 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.04 Total: 12.77 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 5.32 Total: -0.78 kcal Atomic # 7 Polarization: -130.03 SS G_CDS: -3.41 Total: -133.44 kcal Atomic # 8 Polarization: -100.62 SS G_CDS: -5.92 Total: -106.53 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Atomic # 16 Polarization: 115.90 SS G_CDS: -0.37 Total: 115.53 kcal Total: -68.41 -1.31 -69.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336945557.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.111 kcal (2) G-P(sol) polarization free energy of solvation -68.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds