Wall clock time and date at job start Tue Mar 31 2020 01:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 C 1.46506 * 119.99936 * 84.99719 * 3 2 1 5 5 C 1.50701 * 109.46970 * 85.00357 * 4 3 2 6 6 H 1.08005 * 119.99694 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00110 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00229 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47207 * 59.99059 * 9 7 5 11 11 H 1.48496 * 109.47197 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46829 * 299.99728 * 9 7 5 13 13 S 1.65597 * 119.99926 * 265.27680 * 3 2 1 14 14 O 1.42095 * 106.40469 * 23.26116 * 13 3 2 15 15 O 1.42098 * 106.40441 * 156.18457 * 13 3 2 16 16 N 1.65602 * 107.21619 * 269.72326 * 13 3 2 17 17 C 1.47424 * 125.64724 * 269.69122 * 16 13 3 18 18 C 1.55137 * 104.72004 * 155.81808 * 17 16 13 19 19 C 1.55150 * 101.48424 * 37.29690 * 18 17 16 20 20 H 1.08999 * 110.72231 * 82.69781 * 19 18 17 21 21 O 1.42908 * 110.86961 * 205.89825 * 19 18 17 22 22 C 1.47022 * 125.64970 * 89.99816 * 16 13 3 23 23 H 1.09005 * 109.47307 * 300.00055 * 1 2 3 24 24 H 1.08995 * 109.46954 * 59.99844 * 1 2 3 25 25 H 1.08991 * 109.47557 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.46933 * 239.99603 * 2 1 3 27 27 H 1.09000 * 109.46920 * 119.99673 * 2 1 3 28 28 H 1.08999 * 109.46864 * 204.99706 * 4 3 2 29 29 H 1.08999 * 109.46950 * 325.00088 * 4 3 2 30 30 H 0.97000 * 119.99969 * 180.02562 * 8 7 5 31 31 H 1.09003 * 110.36524 * 274.74582 * 17 16 13 32 32 H 1.09003 * 110.36907 * 37.07448 * 17 16 13 33 33 H 1.09002 * 111.18787 * 279.18805 * 18 17 16 34 34 H 1.09003 * 110.93325 * 155.29079 * 18 17 16 35 35 H 0.96696 * 113.99519 * 293.60761 * 21 19 18 36 36 H 1.08997 * 109.88311 * 300.44753 * 22 16 13 37 37 H 1.09005 * 109.88051 * 61.60561 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2640 5 6 3.4948 1.7888 1.8824 6 1 4.1721 1.1111 1.3839 7 6 3.8525 2.3605 3.0849 8 7 3.0276 3.1854 3.6920 9 14 5.5095 1.9646 3.8511 10 1 6.5944 2.3728 2.9229 11 1 5.6512 2.7019 5.1323 12 1 5.6003 0.5046 4.1070 13 16 2.4057 2.1224 -1.4293 14 8 1.6809 1.4412 -2.4440 15 8 2.2940 3.5203 -1.1995 16 7 4.0085 1.8227 -1.7182 17 6 5.1337 2.6670 -1.2772 18 6 6.3503 1.7059 -1.2231 19 6 6.0828 0.7995 -2.4536 20 1 6.4362 1.2763 -3.3679 21 8 6.6938 -0.4813 -2.2849 22 6 4.5448 0.6738 -2.4626 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0923 3.1802 1.0756 29 1 1.3617 1.8097 1.9453 30 1 3.2794 3.5880 4.5379 31 1 5.3114 3.4676 -1.9953 32 1 4.9331 3.0803 -0.2887 33 1 6.3516 1.1235 -0.3017 34 1 7.2853 2.2543 -1.3376 35 1 7.6604 -0.4573 -2.2725 36 1 4.2458 -0.2550 -1.9766 37 1 4.1773 0.6926 -3.4886 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337090262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:59 Heat of formation + Delta-G solvation = -124.472320 kcal Electronic energy + Delta-G solvation = -21571.612493 eV Core-core repulsion = 18282.781573 eV Total energy + Delta-G solvation = -3288.830921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -38.68760 -36.67347 -36.00072 -35.51788 -35.21488 -32.71874 -29.94220 -29.88457 -28.30753 -26.60523 -23.13277 -22.30156 -21.57816 -21.12381 -18.52377 -17.71027 -17.21764 -16.81664 -16.27046 -15.68572 -14.78962 -14.53898 -14.23653 -14.04601 -13.85544 -13.40225 -13.20166 -12.90080 -12.65791 -12.06419 -12.01360 -11.88660 -11.67451 -11.56205 -11.36342 -11.34047 -11.11484 -11.03167 -10.97876 -10.73627 -10.48856 -10.38831 -10.07202 -9.92866 -9.77533 -8.69247 -8.49889 -8.04650 -6.11892 -4.18404 1.21863 3.23459 3.29931 3.30291 3.45459 4.02603 4.17939 4.34771 4.69629 4.71404 5.02999 5.08012 5.21867 5.43497 5.46357 5.62614 5.74216 5.78768 5.82575 5.85634 5.96643 6.08580 6.15532 6.32998 6.35377 6.46981 6.61844 6.68089 6.78989 7.35687 7.45167 7.56634 7.66183 7.85669 8.15552 8.86902 9.47301 10.96042 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013265 B = 0.009819 C = 0.006909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.363577 B = 2850.820926 C = 4051.576021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.990 5.990 4 C 0.245 3.755 5 C -0.538 4.538 6 H 0.063 0.937 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.277 1.277 13 S 2.799 3.201 14 O -0.994 6.994 15 O -0.973 6.973 16 N -1.014 6.014 17 C 0.124 3.876 18 C -0.162 4.162 19 C 0.095 3.905 20 H 0.070 0.930 21 O -0.561 6.561 22 C 0.132 3.868 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.379 0.621 36 H 0.073 0.927 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.485 -5.011 -9.848 12.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.831 5.831 4 C 0.123 3.877 5 C -0.578 4.578 6 H 0.081 0.919 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.202 1.202 13 S 2.809 3.191 14 O -0.979 6.979 15 O -0.958 6.958 16 N -0.854 5.854 17 C -0.001 4.001 18 C -0.201 4.201 19 C 0.035 3.965 20 H 0.088 0.912 21 O -0.366 6.366 22 C 0.005 3.995 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.227 0.773 36 H 0.091 0.909 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.148 -4.549 -10.197 11.911 hybrid contribution 1.805 -0.216 0.917 2.036 sum 5.954 -4.765 -9.280 12.011 Atomic orbital electron populations 1.22206 0.96891 1.01418 1.02368 1.20977 0.93641 0.82900 1.02109 1.57788 1.78173 1.22944 1.24240 1.19198 0.97344 0.92174 0.79022 1.21529 1.02249 1.27965 1.06025 0.91930 1.24953 0.97188 0.94871 0.96860 1.69926 1.35987 1.29777 1.17090 0.86650 0.84173 0.78479 0.78639 1.20087 1.21263 1.20243 1.01381 0.71593 0.73324 0.72797 1.93532 1.70007 1.76437 1.57897 1.93576 1.85388 1.30775 1.86024 1.59131 1.24051 1.33897 1.68272 1.21921 0.84550 0.92292 1.01374 1.23521 0.98317 0.98475 0.99784 1.22812 0.93158 0.83638 0.96935 0.91192 1.86488 1.24447 1.29266 1.96364 1.21350 0.92162 0.89577 0.96367 0.92069 0.92660 0.92310 0.92010 0.90225 0.93217 0.94366 0.92550 0.91942 0.88562 0.89219 0.90335 0.77336 0.90856 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 10.24 37.16 0.38 -2.38 16 2 C 0.13 2.34 6.06 -4.04 -0.02 2.32 16 3 N -0.99 -20.81 2.83 -115.66 -0.33 -21.14 16 4 C 0.24 6.07 5.44 -5.19 -0.03 6.04 16 5 C -0.54 -13.89 9.38 -34.44 -0.32 -14.21 16 6 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.18 13.29 55.43 0.74 -24.45 16 9 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 S 2.80 57.46 6.31 -107.50 -0.68 56.79 16 14 O -0.99 -20.78 16.69 -57.17 -0.95 -21.74 16 15 O -0.97 -22.95 16.27 -57.17 -0.93 -23.88 16 16 N -1.01 -17.74 3.75 -111.29 -0.42 -18.16 16 17 C 0.12 2.00 6.99 -2.41 -0.02 1.99 16 18 C -0.16 -2.14 6.83 -24.46 -0.17 -2.31 16 19 C 0.09 1.15 4.32 -24.90 -0.11 1.05 16 20 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 21 O -0.56 -6.57 13.40 -35.23 -0.47 -7.05 16 22 C 0.13 1.96 6.76 -3.07 -0.02 1.94 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.01 7.61 -51.93 -0.40 0.62 16 27 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 28 H 0.05 1.36 6.91 -51.93 -0.36 1.00 16 29 H 0.04 0.99 8.11 -51.93 -0.42 0.57 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.38 2.67 9.12 45.56 0.42 3.08 16 36 H 0.07 1.12 8.06 -51.93 -0.42 0.71 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 322.17 15.07 4.86 4.86 Total: -1.00 -32.09 322.17 -8.56 -40.65 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.95 Total: 2.71 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -0.40 Total: -3.96 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -0.01 Total: -63.74 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -2.36 Total: -52.66 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 57.46 SS G_CDS: -0.68 Total: 56.79 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.09 -8.56 -40.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337090262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.817 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds