Wall clock time and date at job start Tue Mar 31 2020 01:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 C 1.46506 * 119.99936 * 84.99719 * 3 2 1 5 5 C 1.50701 * 109.46970 * 85.00357 * 4 3 2 6 6 H 1.08005 * 119.99694 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00110 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00229 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47207 * 59.99059 * 9 7 5 11 11 H 1.48496 * 109.47197 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46829 * 299.99728 * 9 7 5 13 13 S 1.65597 * 119.99926 * 265.27680 * 3 2 1 14 14 O 1.42095 * 106.40469 * 23.26116 * 13 3 2 15 15 O 1.42098 * 106.40441 * 156.18457 * 13 3 2 16 16 N 1.65602 * 107.21619 * 269.72326 * 13 3 2 17 17 C 1.47424 * 125.64724 * 269.69122 * 16 13 3 18 18 C 1.55137 * 104.72004 * 155.81808 * 17 16 13 19 19 C 1.55150 * 101.48424 * 37.29690 * 18 17 16 20 20 H 1.08999 * 110.72231 * 82.69781 * 19 18 17 21 21 O 1.42908 * 110.86961 * 205.89825 * 19 18 17 22 22 C 1.47022 * 125.64970 * 89.99816 * 16 13 3 23 23 H 1.09005 * 109.47307 * 300.00055 * 1 2 3 24 24 H 1.08995 * 109.46954 * 59.99844 * 1 2 3 25 25 H 1.08991 * 109.47557 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.46933 * 239.99603 * 2 1 3 27 27 H 1.09000 * 109.46920 * 119.99673 * 2 1 3 28 28 H 1.08999 * 109.46864 * 204.99706 * 4 3 2 29 29 H 1.08999 * 109.46950 * 325.00088 * 4 3 2 30 30 H 0.97000 * 119.99969 * 180.02562 * 8 7 5 31 31 H 1.09003 * 110.36524 * 274.74582 * 17 16 13 32 32 H 1.09003 * 110.36907 * 37.07448 * 17 16 13 33 33 H 1.09002 * 111.18787 * 279.18805 * 18 17 16 34 34 H 1.09003 * 110.93325 * 155.29079 * 18 17 16 35 35 H 0.96696 * 113.99519 * 293.60761 * 21 19 18 36 36 H 1.08997 * 109.88311 * 300.44753 * 22 16 13 37 37 H 1.09005 * 109.88051 * 61.60561 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2640 5 6 3.4948 1.7888 1.8824 6 1 4.1721 1.1111 1.3839 7 6 3.8525 2.3605 3.0849 8 7 3.0276 3.1854 3.6920 9 14 5.5095 1.9646 3.8511 10 1 6.5944 2.3728 2.9229 11 1 5.6512 2.7019 5.1323 12 1 5.6003 0.5046 4.1070 13 16 2.4057 2.1224 -1.4293 14 8 1.6809 1.4412 -2.4440 15 8 2.2940 3.5203 -1.1995 16 7 4.0085 1.8227 -1.7182 17 6 5.1337 2.6670 -1.2772 18 6 6.3503 1.7059 -1.2231 19 6 6.0828 0.7995 -2.4536 20 1 6.4362 1.2763 -3.3679 21 8 6.6938 -0.4813 -2.2849 22 6 4.5448 0.6738 -2.4626 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0923 3.1802 1.0756 29 1 1.3617 1.8097 1.9453 30 1 3.2794 3.5880 4.5379 31 1 5.3114 3.4676 -1.9953 32 1 4.9331 3.0803 -0.2887 33 1 6.3516 1.1235 -0.3017 34 1 7.2853 2.2543 -1.3376 35 1 7.6604 -0.4573 -2.2725 36 1 4.2458 -0.2550 -1.9766 37 1 4.1773 0.6926 -3.4886 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337090262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:57 Heat of formation + Delta-G solvation = -150.468994 kcal Electronic energy + Delta-G solvation = -21572.739794 eV Core-core repulsion = 18282.781573 eV Total energy + Delta-G solvation = -3289.958221 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.77920 -38.38302 -37.69884 -36.94570 -36.54188 -34.70069 -31.56517 -31.07964 -29.44997 -28.50130 -24.96381 -23.62012 -23.14411 -22.15673 -20.01613 -18.92695 -18.77067 -18.44527 -18.07459 -17.32445 -16.46655 -15.89914 -15.67561 -15.32399 -14.94470 -14.84861 -14.68412 -14.51797 -13.96511 -13.72717 -13.65297 -13.42267 -13.29035 -13.17969 -13.07698 -12.76607 -12.69688 -12.52269 -12.38937 -12.26752 -12.13339 -11.82317 -11.66418 -11.63355 -10.86477 -10.57647 -10.05822 -9.77445 -8.16591 -6.30569 -0.39381 1.42890 1.44638 1.52449 1.91693 2.42278 2.51370 3.04649 3.14868 3.50333 3.58313 3.77362 3.93046 4.16690 4.32651 4.39494 4.43986 4.55014 4.57991 4.67486 4.80899 4.87789 4.93166 4.96758 5.09500 5.11599 5.24137 5.27608 5.36002 5.41713 5.54781 5.75560 5.95570 6.10680 6.81109 6.94094 7.39432 8.91423 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013265 B = 0.009819 C = 0.006909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.363577 B = 2850.820926 C = 4051.576021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.997 5.997 4 C 0.261 3.739 5 C -0.538 4.538 6 H 0.069 0.931 7 C 0.012 3.988 8 N -0.929 5.929 9 Si 0.958 3.042 10 H -0.260 1.260 11 H -0.289 1.289 12 H -0.269 1.269 13 S 2.810 3.190 14 O -0.999 6.999 15 O -1.010 7.010 16 N -1.015 6.015 17 C 0.114 3.886 18 C -0.154 4.154 19 C 0.109 3.891 20 H 0.104 0.896 21 O -0.574 6.574 22 C 0.118 3.882 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.016 0.984 29 H 0.020 0.980 30 H 0.265 0.735 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.401 0.599 36 H 0.065 0.935 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.726 -6.455 -11.033 14.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.837 5.837 4 C 0.138 3.862 5 C -0.577 4.577 6 H 0.087 0.913 7 C -0.188 4.188 8 N -0.569 5.569 9 Si 0.783 3.217 10 H -0.184 1.184 11 H -0.214 1.214 12 H -0.195 1.195 13 S 2.821 3.179 14 O -0.983 6.983 15 O -0.995 6.995 16 N -0.857 5.857 17 C -0.011 4.011 18 C -0.193 4.193 19 C 0.049 3.951 20 H 0.122 0.878 21 O -0.383 6.383 22 C -0.008 4.008 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.111 0.889 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.034 0.966 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.132 0.868 35 H 0.252 0.748 36 H 0.083 0.917 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.396 -6.022 -11.404 14.396 hybrid contribution 1.096 0.196 1.223 1.654 sum 7.492 -5.826 -10.181 13.918 Atomic orbital electron populations 1.22188 0.95621 1.03365 1.01397 1.21232 0.94828 0.81337 1.02967 1.57732 1.79059 1.24008 1.22927 1.18726 0.96664 0.90680 0.80172 1.21741 1.02451 1.27550 1.05986 0.91318 1.25813 1.00868 0.94644 0.97455 1.70066 1.38104 1.31124 1.17580 0.85608 0.79986 0.78431 0.77710 1.18432 1.21428 1.19453 1.00807 0.72274 0.72378 0.72464 1.93514 1.70856 1.76246 1.57705 1.93523 1.86343 1.33193 1.86444 1.58847 1.23266 1.35161 1.68409 1.22113 0.85327 0.93605 1.00095 1.23501 0.98269 0.97989 0.99516 1.22712 0.91078 0.83761 0.97581 0.87802 1.86442 1.26598 1.28859 1.96383 1.21662 0.94669 0.87992 0.96434 0.93269 0.93364 0.88913 0.90072 0.90327 0.96559 0.96200 0.92587 0.89730 0.92133 0.91433 0.86824 0.74772 0.91695 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.33 10.24 71.98 0.74 -4.59 16 2 C 0.12 4.33 6.06 86.38 0.52 4.86 16 3 N -1.00 -42.71 2.83 -519.85 -1.47 -44.18 16 4 C 0.26 13.47 5.44 85.63 0.47 13.93 16 5 C -0.54 -28.22 9.38 25.60 0.24 -27.98 16 6 H 0.07 3.45 7.81 -2.91 -0.02 3.42 16 7 C 0.01 0.63 5.46 84.65 0.46 1.09 16 8 N -0.93 -53.94 13.29 21.45 0.28 -53.66 16 9 Si 0.96 41.60 29.54 68.60 2.03 43.62 16 10 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 11 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 13 S 2.81 116.57 6.31 -56.49 -0.36 116.21 16 14 O -1.00 -41.30 16.69 -128.00 -2.14 -43.43 16 15 O -1.01 -49.27 16.27 -128.00 -2.08 -51.35 16 16 N -1.02 -34.65 3.75 -506.00 -1.90 -36.54 16 17 C 0.11 3.54 6.99 86.94 0.61 4.15 16 18 C -0.15 -3.63 6.83 32.06 0.22 -3.41 16 19 C 0.11 2.25 4.32 31.78 0.14 2.39 16 20 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 21 O -0.57 -11.34 13.40 -148.98 -2.00 -13.34 16 22 C 0.12 3.24 6.76 86.73 0.59 3.82 16 23 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 24 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.08 2.56 7.61 -2.39 -0.02 2.54 16 27 H 0.08 2.79 8.11 -2.39 -0.02 2.77 16 28 H 0.02 0.95 6.91 -2.39 -0.02 0.93 16 29 H 0.02 1.08 8.11 -2.39 -0.02 1.06 16 30 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.40 3.96 9.12 -74.06 -0.68 3.28 16 36 H 0.06 1.88 8.06 -2.39 -0.02 1.86 16 37 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -70.36 322.17 -3.26 -73.62 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.38 Total: 14.79 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 3.98 Total: -5.74 kcal Atomic # 7 Polarization: -131.30 SS G_CDS: -3.08 Total: -134.38 kcal Atomic # 8 Polarization: -101.91 SS G_CDS: -6.21 Total: -108.12 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 116.57 SS G_CDS: -0.36 Total: 116.21 kcal Total: -70.36 -3.26 -73.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337090262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.849 kcal (2) G-P(sol) polarization free energy of solvation -70.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds