Wall clock time and date at job start Tue Mar 31 2020 01:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 120.00345 * 275.00289 * 3 2 1 5 5 C 1.50697 * 109.47079 * 85.00200 * 4 3 2 6 6 H 1.08000 * 119.99936 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99754 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00085 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99983 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46900 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47397 * 119.99414 * 9 7 5 12 12 H 1.48500 * 109.47374 * 239.99779 * 9 7 5 13 13 S 1.65605 * 119.99782 * 95.00317 * 3 2 1 14 14 O 1.42099 * 106.40321 * 203.53813 * 13 3 2 15 15 O 1.42097 * 106.40157 * 336.45932 * 13 3 2 16 16 N 1.65600 * 107.21849 * 90.00219 * 13 3 2 17 17 C 1.47429 * 125.64625 * 269.69322 * 16 13 3 18 18 C 1.55125 * 104.72515 * 155.81722 * 17 16 13 19 19 C 1.55152 * 101.48524 * 37.29321 * 18 17 16 20 20 H 1.09003 * 110.72375 * 205.97368 * 19 18 17 21 21 O 1.42897 * 110.72229 * 82.69690 * 19 18 17 22 22 C 1.47012 * 125.65467 * 89.99680 * 16 13 3 23 23 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 28 28 H 1.08998 * 109.47222 * 205.00373 * 4 3 2 29 29 H 1.09000 * 109.46517 * 324.99960 * 4 3 2 30 30 H 0.97003 * 120.00108 * 179.97438 * 8 7 5 31 31 H 1.09004 * 110.36193 * 274.74726 * 17 16 13 32 32 H 1.09003 * 110.36721 * 37.06139 * 17 16 13 33 33 H 1.09002 * 111.19161 * 279.18675 * 18 17 16 34 34 H 1.08997 * 110.93903 * 155.28615 * 18 17 16 35 35 H 0.96703 * 114.00091 * 66.47623 * 21 19 18 36 36 H 1.09007 * 109.88531 * 300.44516 * 22 16 13 37 37 H 1.09003 * 109.88448 * 61.60288 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 0.8359 2.7289 -1.6354 6 1 -0.0229 2.5942 -0.9945 7 6 0.7222 3.4674 -2.7942 8 7 1.7678 3.6310 -3.5749 9 14 -0.9169 4.2355 -3.2552 10 1 -1.9275 3.9050 -2.2184 11 1 -0.7646 5.7099 -3.3463 12 1 -1.3621 3.7019 -4.5676 13 16 2.4121 2.1202 1.4288 14 8 2.3056 3.5186 1.2000 15 8 1.6869 1.4414 2.4448 16 7 4.0144 1.8138 1.7137 17 6 4.5489 0.6625 2.4637 18 6 5.9960 0.4844 1.9340 19 6 6.4369 1.9590 1.7380 20 1 7.2117 2.0317 0.9747 21 8 6.8873 2.5204 2.9725 22 6 5.1392 2.6479 1.2661 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.9079 2.8919 -1.1513 29 1 2.4688 1.4184 -2.0480 30 1 1.6878 4.1503 -4.3903 31 1 4.5572 0.8769 3.5324 32 1 3.9580 -0.2305 2.2597 33 1 6.0054 -0.0554 0.9871 34 1 6.6223 -0.0158 2.6727 35 1 7.7002 2.1219 3.3125 36 1 5.1344 2.7245 0.1788 37 1 5.0641 3.6407 1.7099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337090263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:02 Heat of formation + Delta-G solvation = -121.141712 kcal Electronic energy + Delta-G solvation = -21286.625767 eV Core-core repulsion = 17997.939273 eV Total energy + Delta-G solvation = -3288.686495 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.92331 -36.60913 -36.02619 -35.39549 -35.11280 -32.58400 -30.07291 -29.78828 -28.63978 -26.72996 -22.78386 -22.55290 -21.75580 -21.22341 -18.58029 -17.58151 -17.24842 -16.85106 -16.36845 -15.67721 -15.25026 -14.53480 -14.34656 -13.89831 -13.68215 -13.09262 -13.05792 -12.92569 -12.75513 -12.28892 -12.20324 -11.89382 -11.61120 -11.50706 -11.47097 -11.22815 -11.13707 -10.99437 -10.94781 -10.82628 -10.45992 -10.39480 -10.11391 -9.88873 -9.60283 -8.82088 -8.42443 -8.07150 -6.05364 -4.08030 1.17214 3.31705 3.39632 3.44564 3.53043 3.99777 4.16057 4.37505 4.45999 4.58837 4.82615 5.11986 5.27994 5.30290 5.39571 5.46126 5.56362 5.63306 5.82227 5.86148 5.89476 5.95687 6.01001 6.15412 6.30044 6.43120 6.53892 6.75337 6.99647 7.23037 7.42526 7.50141 7.64658 7.92975 8.22591 8.94379 9.56725 11.03481 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023510 B = 0.006214 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.710423 B = 4504.903399 C = 5006.570649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.136 3.864 3 N -0.992 5.992 4 C 0.258 3.742 5 C -0.523 4.523 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.284 1.284 13 S 2.792 3.208 14 O -0.959 6.959 15 O -0.991 6.991 16 N -1.023 6.023 17 C 0.129 3.871 18 C -0.162 4.162 19 C 0.094 3.906 20 H 0.077 0.923 21 O -0.558 6.558 22 C 0.128 3.872 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.262 0.738 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.376 0.624 36 H 0.083 0.917 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.361 -8.726 8.780 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.010 3.990 3 N -0.834 5.834 4 C 0.136 3.864 5 C -0.563 4.563 6 H 0.082 0.918 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.210 1.210 13 S 2.802 3.198 14 O -0.943 6.943 15 O -0.975 6.975 16 N -0.862 5.862 17 C 0.003 3.997 18 C -0.201 4.201 19 C 0.033 3.967 20 H 0.094 0.906 21 O -0.364 6.364 22 C 0.002 3.998 23 H 0.072 0.928 24 H 0.098 0.902 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.223 0.777 36 H 0.101 0.899 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.209 -7.732 9.063 15.057 hybrid contribution -0.129 -0.129 -0.619 0.645 sum 9.080 -7.862 8.444 14.681 Atomic orbital electron populations 1.22259 0.96329 1.00826 1.03712 1.20944 0.94872 0.82325 1.00891 1.57885 1.78014 1.23040 1.24503 1.19048 0.97544 0.90855 0.78962 1.21564 0.96343 1.31675 1.06696 0.91848 1.24929 0.96867 0.96029 0.96256 1.69923 1.29233 1.40809 1.13660 0.86487 0.83857 0.79208 0.78169 1.19640 1.20844 1.21030 1.01710 0.71615 0.73596 0.72922 1.93621 1.84893 1.30119 1.85617 1.93530 1.69630 1.76572 1.57765 1.59445 1.23894 1.34690 1.68194 1.21860 0.93744 0.88137 0.95976 1.23520 0.96937 0.97225 1.02462 1.22807 0.95654 0.91877 0.86319 0.90551 1.86585 1.46473 1.63874 1.39438 1.21646 0.83727 0.94926 0.99505 0.92837 0.90246 0.93087 0.92377 0.91155 0.94658 0.94805 0.92818 0.91453 0.91084 0.89612 0.89964 0.77665 0.89883 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.83 37.16 0.37 -2.72 16 2 C 0.14 2.39 6.09 -4.04 -0.02 2.36 16 3 N -0.99 -20.71 2.86 -115.66 -0.33 -21.04 16 4 C 0.26 6.38 5.12 -5.19 -0.03 6.36 16 5 C -0.52 -14.52 8.41 -34.44 -0.29 -14.81 16 6 H 0.06 1.77 6.89 -52.49 -0.36 1.41 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -25.98 13.29 55.43 0.74 -25.25 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 S 2.79 58.09 6.26 -107.50 -0.67 57.42 16 14 O -0.96 -23.86 16.69 -57.17 -0.95 -24.81 16 15 O -0.99 -21.42 16.69 -57.17 -0.95 -22.38 16 16 N -1.02 -16.76 3.75 -111.29 -0.42 -17.18 16 17 C 0.13 1.64 6.98 -2.41 -0.02 1.63 16 18 C -0.16 -1.52 6.82 -24.47 -0.17 -1.69 16 19 C 0.09 1.00 4.33 -24.90 -0.11 0.89 16 20 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 21 O -0.56 -5.94 13.38 -35.23 -0.47 -6.41 16 22 C 0.13 1.90 6.75 -3.07 -0.02 1.87 16 23 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.08 1.59 6.59 -51.93 -0.34 1.25 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.88 7.61 -51.93 -0.40 0.49 16 27 H 0.07 1.13 8.00 -51.93 -0.42 0.72 16 28 H 0.04 0.93 7.61 -51.93 -0.40 0.54 16 29 H 0.03 0.85 8.00 -51.93 -0.42 0.43 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.38 2.08 9.12 45.56 0.42 2.50 16 36 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 37 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 LS Contribution 318.91 15.07 4.81 4.81 Total: -1.00 -34.73 318.91 -8.51 -43.24 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.85 Total: -0.77 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -0.39 Total: -4.48 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: -0.01 Total: -63.46 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -2.38 Total: -53.60 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 58.09 SS G_CDS: -0.67 Total: 57.42 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.73 -8.51 -43.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337090263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.903 kcal (2) G-P(sol) polarization free energy of solvation -34.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds