Wall clock time and date at job start Tue Mar 31 2020 01:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 120.00345 * 275.00289 * 3 2 1 5 5 C 1.50697 * 109.47079 * 85.00200 * 4 3 2 6 6 H 1.08000 * 119.99936 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99754 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00085 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99983 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46900 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47397 * 119.99414 * 9 7 5 12 12 H 1.48500 * 109.47374 * 239.99779 * 9 7 5 13 13 S 1.65605 * 119.99782 * 95.00317 * 3 2 1 14 14 O 1.42099 * 106.40321 * 203.53813 * 13 3 2 15 15 O 1.42097 * 106.40157 * 336.45932 * 13 3 2 16 16 N 1.65600 * 107.21849 * 90.00219 * 13 3 2 17 17 C 1.47429 * 125.64625 * 269.69322 * 16 13 3 18 18 C 1.55125 * 104.72515 * 155.81722 * 17 16 13 19 19 C 1.55152 * 101.48524 * 37.29321 * 18 17 16 20 20 H 1.09003 * 110.72375 * 205.97368 * 19 18 17 21 21 O 1.42897 * 110.72229 * 82.69690 * 19 18 17 22 22 C 1.47012 * 125.65467 * 89.99680 * 16 13 3 23 23 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 28 28 H 1.08998 * 109.47222 * 205.00373 * 4 3 2 29 29 H 1.09000 * 109.46517 * 324.99960 * 4 3 2 30 30 H 0.97003 * 120.00108 * 179.97438 * 8 7 5 31 31 H 1.09004 * 110.36193 * 274.74726 * 17 16 13 32 32 H 1.09003 * 110.36721 * 37.06139 * 17 16 13 33 33 H 1.09002 * 111.19161 * 279.18675 * 18 17 16 34 34 H 1.08997 * 110.93903 * 155.28615 * 18 17 16 35 35 H 0.96703 * 114.00091 * 66.47623 * 21 19 18 36 36 H 1.09007 * 109.88531 * 300.44516 * 22 16 13 37 37 H 1.09003 * 109.88448 * 61.60288 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 0.8359 2.7289 -1.6354 6 1 -0.0229 2.5942 -0.9945 7 6 0.7222 3.4674 -2.7942 8 7 1.7678 3.6310 -3.5749 9 14 -0.9169 4.2355 -3.2552 10 1 -1.9275 3.9050 -2.2184 11 1 -0.7646 5.7099 -3.3463 12 1 -1.3621 3.7019 -4.5676 13 16 2.4121 2.1202 1.4288 14 8 2.3056 3.5186 1.2000 15 8 1.6869 1.4414 2.4448 16 7 4.0144 1.8138 1.7137 17 6 4.5489 0.6625 2.4637 18 6 5.9960 0.4844 1.9340 19 6 6.4369 1.9590 1.7380 20 1 7.2117 2.0317 0.9747 21 8 6.8873 2.5204 2.9725 22 6 5.1392 2.6479 1.2661 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.9079 2.8919 -1.1513 29 1 2.4688 1.4184 -2.0480 30 1 1.6878 4.1503 -4.3903 31 1 4.5572 0.8769 3.5324 32 1 3.9580 -0.2305 2.2597 33 1 6.0054 -0.0554 0.9871 34 1 6.6223 -0.0158 2.6727 35 1 7.7002 2.1219 3.3125 36 1 5.1344 2.7245 0.1788 37 1 5.0641 3.6407 1.7099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337090263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:01 Heat of formation + Delta-G solvation = -150.083299 kcal Electronic energy + Delta-G solvation = -21287.880769 eV Core-core repulsion = 17997.939273 eV Total energy + Delta-G solvation = -3289.941496 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.87889 -38.35147 -37.71959 -36.88549 -36.33005 -34.65364 -31.46634 -31.03718 -29.68444 -28.68389 -24.70320 -23.74517 -23.24766 -22.11813 -20.02681 -18.90082 -18.69325 -18.42068 -18.14182 -17.15449 -16.59194 -16.21467 -15.58841 -15.34083 -15.01497 -14.71356 -14.56077 -14.11092 -14.00487 -13.84367 -13.69501 -13.26428 -13.21810 -13.15882 -13.04369 -12.84054 -12.81027 -12.75392 -12.29075 -12.26081 -12.15557 -11.74212 -11.64673 -11.51352 -10.86715 -10.58509 -10.09618 -9.81148 -8.19504 -6.28873 -0.43679 1.36929 1.39992 1.50958 2.02470 2.39785 2.56594 3.11398 3.13884 3.34136 3.62492 3.75268 3.94763 4.15064 4.34442 4.44824 4.47178 4.53149 4.60356 4.70185 4.81184 4.85538 4.93401 4.99518 5.09686 5.14779 5.17104 5.21621 5.39726 5.47086 5.58614 5.73742 5.98043 6.13243 6.78726 6.99916 7.38889 8.88550 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023510 B = 0.006214 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.710423 B = 4504.903399 C = 5006.570649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.126 3.874 3 N -0.995 5.995 4 C 0.274 3.726 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.012 3.988 8 N -0.924 5.924 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.269 1.269 13 S 2.804 3.196 14 O -1.010 7.010 15 O -1.003 7.003 16 N -1.021 6.021 17 C 0.112 3.888 18 C -0.147 4.147 19 C 0.103 3.897 20 H 0.106 0.894 21 O -0.579 6.579 22 C 0.113 3.887 23 H 0.035 0.965 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.013 0.987 29 H 0.031 0.969 30 H 0.266 0.734 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.400 0.600 36 H 0.077 0.923 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.431 -10.588 9.157 18.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.837 5.837 4 C 0.151 3.849 5 C -0.578 4.578 6 H 0.072 0.928 7 C -0.187 4.187 8 N -0.564 5.564 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.194 1.194 13 S 2.815 3.185 14 O -0.994 6.994 15 O -0.987 6.987 16 N -0.863 5.863 17 C -0.012 4.012 18 C -0.185 4.185 19 C 0.043 3.957 20 H 0.123 0.877 21 O -0.388 6.388 22 C -0.013 4.013 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.031 0.969 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.136 0.864 35 H 0.251 0.749 36 H 0.095 0.905 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.280 -9.627 9.459 16.965 hybrid contribution -0.399 0.414 -0.644 0.863 sum 9.881 -9.213 8.815 16.131 Atomic orbital electron populations 1.22241 0.96745 1.02612 1.01448 1.21270 0.94647 0.80788 1.03175 1.57756 1.78849 1.24188 1.22880 1.18612 0.95568 0.90373 0.80361 1.21868 0.97245 1.32022 1.06701 0.92819 1.25686 1.00075 0.96555 0.96373 1.70002 1.30835 1.41486 1.14102 0.85608 0.80094 0.78258 0.78359 1.19628 1.20742 1.19436 1.00996 0.72492 0.72387 0.72670 1.93547 1.86213 1.33438 1.86233 1.93500 1.70858 1.76407 1.57907 1.59044 1.22672 1.36290 1.68312 1.22269 0.96245 0.86979 0.95751 1.23527 0.94572 0.96523 1.03919 1.22726 0.93987 0.91819 0.87167 0.87690 1.86528 1.48177 1.64663 1.39447 1.21870 0.85685 0.94404 0.99303 0.94570 0.92925 0.89313 0.89468 0.89359 0.96930 0.95084 0.92488 0.91480 0.89957 0.88421 0.86447 0.74873 0.90471 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.00 9.83 71.98 0.71 -5.29 16 2 C 0.13 4.25 6.09 86.38 0.53 4.78 16 3 N -1.00 -41.78 2.86 -519.85 -1.48 -43.26 16 4 C 0.27 13.90 5.12 85.63 0.44 14.34 16 5 C -0.54 -30.56 8.41 25.60 0.22 -30.34 16 6 H 0.05 3.08 6.89 -2.91 -0.02 3.06 16 7 C 0.01 0.70 5.46 84.65 0.46 1.16 16 8 N -0.92 -54.16 13.29 21.45 0.28 -53.88 16 9 Si 0.95 45.22 29.54 68.60 2.03 47.24 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 13 S 2.80 118.63 6.26 -56.49 -0.35 118.28 16 14 O -1.01 -52.56 16.69 -128.00 -2.14 -54.69 16 15 O -1.00 -43.33 16.69 -128.00 -2.14 -45.47 16 16 N -1.02 -33.04 3.75 -506.01 -1.90 -34.94 16 17 C 0.11 2.60 6.98 86.93 0.61 3.21 16 18 C -0.15 -2.18 6.82 32.06 0.22 -1.96 16 19 C 0.10 1.93 4.33 31.78 0.14 2.07 16 20 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 21 O -0.58 -10.86 13.38 -148.98 -1.99 -12.86 16 22 C 0.11 3.34 6.75 86.73 0.59 3.93 16 23 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.05 2.11 6.59 -2.39 -0.02 2.09 16 25 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.09 2.43 7.61 -2.39 -0.02 2.42 16 27 H 0.09 2.66 8.00 -2.39 -0.02 2.64 16 28 H 0.01 0.70 7.61 -2.39 -0.02 0.68 16 29 H 0.03 1.58 8.00 -2.39 -0.02 1.56 16 30 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.40 3.02 9.12 -74.06 -0.68 2.35 16 36 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 37 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 Total: -1.00 -76.84 318.91 -3.40 -80.25 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.39 Total: 7.44 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 3.90 Total: -8.11 kcal Atomic # 7 Polarization: -128.97 SS G_CDS: -3.10 Total: -132.07 kcal Atomic # 8 Polarization: -106.75 SS G_CDS: -6.27 Total: -113.02 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: 118.63 SS G_CDS: -0.35 Total: 118.28 kcal Total: -76.84 -3.40 -80.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337090263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.837 kcal (2) G-P(sol) polarization free energy of solvation -76.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds