Wall clock time and date at job start Tue Mar 31 2020 01:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47305 * 2 1 4 4 C 1.46499 * 119.99872 * 275.00206 * 3 2 1 5 5 C 1.50694 * 109.47137 * 274.99710 * 4 3 2 6 6 H 1.08004 * 119.99920 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00373 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99418 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00391 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47174 * 90.00196 * 9 7 5 11 11 H 1.48499 * 109.47225 * 210.00089 * 9 7 5 12 12 H 1.48497 * 109.47112 * 329.99835 * 9 7 5 13 13 S 1.65593 * 119.99831 * 94.99630 * 3 2 1 14 14 O 1.42096 * 106.40578 * 336.46694 * 13 3 2 15 15 O 1.42103 * 106.40390 * 203.54067 * 13 3 2 16 16 N 1.65610 * 107.21759 * 90.00604 * 13 3 2 17 17 C 1.47052 * 120.80809 * 270.02161 * 16 13 3 18 18 C 1.53339 * 108.41001 * 129.60948 * 17 16 13 19 19 C 1.53201 * 109.02219 * 52.73191 * 18 17 16 20 20 C 1.53069 * 109.39881 * 300.27338 * 19 18 17 21 21 O 1.42127 * 120.80934 * 89.99731 * 16 13 3 22 22 H 1.09000 * 109.46948 * 299.99625 * 1 2 3 23 23 H 1.08999 * 109.46997 * 60.00277 * 1 2 3 24 24 H 1.09000 * 109.46803 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47576 * 239.99963 * 2 1 3 26 26 H 1.09000 * 109.47702 * 119.99970 * 2 1 3 27 27 H 1.09001 * 109.47202 * 34.99440 * 4 3 2 28 28 H 1.08994 * 109.47035 * 154.99338 * 4 3 2 29 29 H 0.97002 * 119.99258 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.67852 * 249.33718 * 17 16 13 31 31 H 1.09004 * 109.68355 * 9.83821 * 17 16 13 32 32 H 1.09002 * 109.55155 * 172.59572 * 18 17 16 33 33 H 1.09000 * 109.54478 * 292.87724 * 18 17 16 34 34 H 1.09001 * 109.51924 * 180.27833 * 19 18 17 35 35 H 1.09002 * 109.46562 * 60.23651 * 19 18 17 36 36 H 1.09002 * 109.49458 * 299.99500 * 20 19 18 37 37 H 1.08996 * 109.49215 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8823 6 1 4.1723 1.1117 -1.3835 7 6 3.8529 2.3614 -3.0843 8 7 3.0283 3.1871 -3.6910 9 14 5.5098 1.9655 -3.8506 10 1 5.3748 0.7826 -4.7382 11 1 5.9787 3.1293 -4.6448 12 1 6.4933 1.6698 -2.7779 13 16 2.4121 2.1202 1.4287 14 8 1.6869 1.4415 2.4448 15 8 2.3057 3.5186 1.1998 16 7 4.0144 1.8137 1.7137 17 6 4.4305 0.6245 2.4720 18 6 5.5131 -0.1072 1.6696 19 6 6.6232 0.8849 1.3085 20 6 6.0346 2.0246 0.4733 21 8 5.0210 2.6935 1.2310 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.3617 1.8097 -1.9453 28 1 2.0921 3.1802 -1.0756 29 1 3.2805 3.5902 -4.5364 30 1 4.8323 0.9277 3.4389 31 1 3.5748 -0.0342 2.6206 32 1 5.9284 -0.9163 2.2706 33 1 5.0777 -0.5151 0.7574 34 1 7.3953 0.3739 0.7332 35 1 7.0588 1.2907 2.2215 36 1 5.5983 1.6189 -0.4395 37 1 6.8231 2.7317 0.2159 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337186697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:50 Heat of formation + Delta-G solvation = -73.464265 kcal Electronic energy + Delta-G solvation = -22062.266405 eV Core-core repulsion = 18775.647359 eV Total energy + Delta-G solvation = -3286.619045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.36943 -36.79000 -36.05490 -35.23924 -33.49994 -32.74074 -32.19757 -29.96738 -26.65479 -26.37361 -24.16063 -23.14921 -21.78045 -20.46194 -18.83905 -17.37600 -16.92654 -16.69438 -16.33040 -15.42007 -14.95281 -14.55375 -14.39965 -14.06593 -13.86748 -13.57855 -13.21220 -12.93930 -12.78798 -12.12262 -12.04249 -11.72356 -11.71165 -11.55927 -11.34057 -11.16402 -11.09051 -11.06625 -10.94742 -10.58613 -10.52685 -10.38914 -10.12136 -9.91648 -9.59032 -8.77517 -8.50360 -8.05276 -6.12555 -4.18270 0.96981 2.93834 3.20174 3.26212 3.29029 4.00692 4.22909 4.33407 4.84633 4.92743 5.02004 5.10680 5.21824 5.36885 5.41086 5.56132 5.69100 5.69839 5.79238 5.81371 5.92618 6.06283 6.08912 6.16362 6.19859 6.30256 6.40890 6.63034 6.65426 7.25567 7.37553 7.46127 7.66356 7.84189 8.14493 8.84001 9.45948 10.95907 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015186 B = 0.010384 C = 0.007648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.360917 B = 2695.776930 C = 3660.416885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.128 3.872 3 N -0.987 5.987 4 C 0.245 3.755 5 C -0.536 4.536 6 H 0.063 0.937 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.792 3.208 14 O -0.982 6.982 15 O -0.958 6.958 16 N -0.872 5.872 17 C 0.106 3.894 18 C -0.137 4.137 19 C -0.146 4.146 20 C 0.014 3.986 21 O -0.107 6.107 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.264 0.736 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.619 -8.088 8.612 12.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.002 3.998 3 N -0.830 5.830 4 C 0.123 3.877 5 C -0.575 4.575 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.800 3.200 14 O -0.967 6.967 15 O -0.942 6.942 16 N -0.748 5.748 17 C -0.020 4.020 18 C -0.176 4.176 19 C -0.184 4.184 20 C -0.064 4.064 21 O -0.114 6.114 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.038 -7.214 9.042 11.960 hybrid contribution 1.507 -0.622 -1.043 1.936 sum 4.545 -7.836 7.999 12.085 Atomic orbital electron populations 1.22203 0.96722 1.01464 1.02524 1.21016 0.93866 0.82924 1.02042 1.57909 1.77573 1.23003 1.24522 1.19224 0.97336 0.92393 0.78766 1.21516 1.02184 1.27960 1.05871 0.91908 1.24928 0.97082 0.94856 0.96927 1.69928 1.35951 1.29628 1.17038 0.86662 0.84152 0.77982 0.79493 1.20689 1.21067 1.19717 1.01933 0.71419 0.73763 0.72917 1.93579 1.68234 1.76886 1.58010 1.93573 1.84702 1.30338 1.85569 1.61292 1.16717 1.32040 1.64708 1.21758 0.99466 0.86052 0.94741 1.21921 0.96534 0.97957 1.01169 1.22006 0.98157 0.97375 1.00851 1.23371 0.90964 0.96365 0.95700 1.90716 1.31993 1.17478 1.71172 0.92586 0.91952 0.92273 0.90126 0.92098 0.94233 0.93002 0.92588 0.91070 0.88674 0.90689 0.90675 0.90889 0.91402 0.89294 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.13 2.15 6.06 -4.04 -0.02 2.12 16 3 N -0.99 -20.29 2.82 -115.67 -0.33 -20.62 16 4 C 0.24 6.03 5.43 -5.20 -0.03 6.00 16 5 C -0.54 -13.63 8.96 -34.44 -0.31 -13.94 16 6 H 0.06 1.51 5.77 -52.48 -0.30 1.21 16 7 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 9 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 13 S 2.79 58.11 6.23 -107.50 -0.67 57.44 16 14 O -0.98 -19.80 15.89 -57.17 -0.91 -20.71 16 15 O -0.96 -23.81 16.40 -62.13 -1.02 -24.83 16 16 N -0.87 -16.16 4.03 -10.12 -0.04 -16.20 16 17 C 0.11 1.50 6.54 -3.57 -0.02 1.47 16 18 C -0.14 -1.71 6.14 -26.45 -0.16 -1.87 16 19 C -0.15 -1.90 6.07 -26.59 -0.16 -2.07 16 20 C 0.01 0.24 7.08 37.19 0.26 0.50 16 21 O -0.11 -2.12 11.48 -20.15 -0.23 -2.35 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 1.34 8.11 -51.93 -0.42 0.91 16 26 H 0.06 0.89 7.61 -51.93 -0.40 0.49 16 27 H 0.04 1.00 8.11 -51.93 -0.42 0.58 16 28 H 0.05 1.44 6.91 -51.93 -0.36 1.08 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.10 1.23 7.23 -51.93 -0.38 0.86 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.73 5.53 -51.93 -0.29 1.44 16 37 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 313.84 15.07 4.73 4.73 Total: -1.00 -31.23 313.84 -8.41 -39.65 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.50 Total: 0.56 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -0.16 Total: -8.36 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.37 Total: -61.20 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -2.16 Total: -47.89 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 58.11 SS G_CDS: -0.67 Total: 57.44 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.23 -8.41 -39.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337186697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.816 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds