Wall clock time and date at job start Tue Mar 31 2020 01:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47305 * 2 1 4 4 C 1.46499 * 119.99872 * 275.00206 * 3 2 1 5 5 C 1.50694 * 109.47137 * 274.99710 * 4 3 2 6 6 H 1.08004 * 119.99920 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00373 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99418 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00391 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47174 * 90.00196 * 9 7 5 11 11 H 1.48499 * 109.47225 * 210.00089 * 9 7 5 12 12 H 1.48497 * 109.47112 * 329.99835 * 9 7 5 13 13 S 1.65593 * 119.99831 * 94.99630 * 3 2 1 14 14 O 1.42096 * 106.40578 * 336.46694 * 13 3 2 15 15 O 1.42103 * 106.40390 * 203.54067 * 13 3 2 16 16 N 1.65610 * 107.21759 * 90.00604 * 13 3 2 17 17 C 1.47052 * 120.80809 * 270.02161 * 16 13 3 18 18 C 1.53339 * 108.41001 * 129.60948 * 17 16 13 19 19 C 1.53201 * 109.02219 * 52.73191 * 18 17 16 20 20 C 1.53069 * 109.39881 * 300.27338 * 19 18 17 21 21 O 1.42127 * 120.80934 * 89.99731 * 16 13 3 22 22 H 1.09000 * 109.46948 * 299.99625 * 1 2 3 23 23 H 1.08999 * 109.46997 * 60.00277 * 1 2 3 24 24 H 1.09000 * 109.46803 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47576 * 239.99963 * 2 1 3 26 26 H 1.09000 * 109.47702 * 119.99970 * 2 1 3 27 27 H 1.09001 * 109.47202 * 34.99440 * 4 3 2 28 28 H 1.08994 * 109.47035 * 154.99338 * 4 3 2 29 29 H 0.97002 * 119.99258 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.67852 * 249.33718 * 17 16 13 31 31 H 1.09004 * 109.68355 * 9.83821 * 17 16 13 32 32 H 1.09002 * 109.55155 * 172.59572 * 18 17 16 33 33 H 1.09000 * 109.54478 * 292.87724 * 18 17 16 34 34 H 1.09001 * 109.51924 * 180.27833 * 19 18 17 35 35 H 1.09002 * 109.46562 * 60.23651 * 19 18 17 36 36 H 1.09002 * 109.49458 * 299.99500 * 20 19 18 37 37 H 1.08996 * 109.49215 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8823 6 1 4.1723 1.1117 -1.3835 7 6 3.8529 2.3614 -3.0843 8 7 3.0283 3.1871 -3.6910 9 14 5.5098 1.9655 -3.8506 10 1 5.3748 0.7826 -4.7382 11 1 5.9787 3.1293 -4.6448 12 1 6.4933 1.6698 -2.7779 13 16 2.4121 2.1202 1.4287 14 8 1.6869 1.4415 2.4448 15 8 2.3057 3.5186 1.1998 16 7 4.0144 1.8137 1.7137 17 6 4.4305 0.6245 2.4720 18 6 5.5131 -0.1072 1.6696 19 6 6.6232 0.8849 1.3085 20 6 6.0346 2.0246 0.4733 21 8 5.0210 2.6935 1.2310 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.3617 1.8097 -1.9453 28 1 2.0921 3.1802 -1.0756 29 1 3.2805 3.5902 -4.5364 30 1 4.8323 0.9277 3.4389 31 1 3.5748 -0.0342 2.6206 32 1 5.9284 -0.9163 2.2706 33 1 5.0777 -0.5151 0.7574 34 1 7.3953 0.3739 0.7332 35 1 7.0588 1.2907 2.2215 36 1 5.5983 1.6189 -0.4395 37 1 6.8231 2.7317 0.2159 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337186697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:49 Heat of formation + Delta-G solvation = -95.534714 kcal Electronic energy + Delta-G solvation = -22063.223451 eV Core-core repulsion = 18775.647359 eV Total energy + Delta-G solvation = -3287.576092 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.65519 -38.48266 -37.70008 -36.98910 -34.72978 -34.67862 -33.47397 -31.53648 -28.51274 -27.62599 -25.37284 -24.89368 -23.31950 -21.67665 -20.29099 -18.96019 -18.65686 -18.34423 -17.98491 -16.98849 -16.49607 -16.02240 -15.70316 -15.52658 -15.25379 -14.90021 -14.66430 -14.54762 -13.95092 -13.82449 -13.67232 -13.37238 -13.27774 -13.15845 -13.08914 -12.73545 -12.70298 -12.38603 -12.29241 -12.09493 -12.02348 -11.74310 -11.67380 -11.50724 -11.01441 -10.56934 -10.18524 -9.73377 -8.14815 -6.27429 -0.63563 1.40006 1.42762 1.44679 1.52733 2.36100 2.45024 2.80444 3.17927 3.51724 3.88204 3.91365 3.96897 3.97538 4.23124 4.40747 4.44251 4.52618 4.62096 4.65056 4.71671 4.90938 4.98316 5.01504 5.04619 5.13313 5.17082 5.26370 5.34427 5.42659 5.52014 5.76305 5.88366 6.07410 6.12865 6.82960 7.41267 8.94022 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015186 B = 0.010384 C = 0.007648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.360917 B = 2695.776930 C = 3660.416885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 N -0.991 5.991 4 C 0.260 3.740 5 C -0.533 4.533 6 H 0.078 0.922 7 C 0.009 3.991 8 N -0.931 5.931 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.292 1.292 12 H -0.249 1.249 13 S 2.803 3.197 14 O -0.977 6.977 15 O -1.008 7.008 16 N -0.873 5.873 17 C 0.092 3.908 18 C -0.134 4.134 19 C -0.140 4.140 20 C 0.004 3.996 21 O -0.135 6.135 22 H 0.047 0.953 23 H 0.046 0.954 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.024 0.976 28 H 0.011 0.989 29 H 0.263 0.737 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.529 -10.720 9.790 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.007 4.007 3 N -0.833 5.833 4 C 0.136 3.864 5 C -0.572 4.572 6 H 0.096 0.904 7 C -0.190 4.190 8 N -0.571 5.571 9 Si 0.777 3.223 10 H -0.199 1.199 11 H -0.218 1.218 12 H -0.172 1.172 13 S 2.811 3.189 14 O -0.962 6.962 15 O -0.992 6.992 16 N -0.752 5.752 17 C -0.032 4.032 18 C -0.173 4.173 19 C -0.177 4.177 20 C -0.074 4.074 21 O -0.142 6.142 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.113 0.887 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.042 0.958 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.945 -9.888 10.251 15.077 hybrid contribution 0.891 0.164 -1.330 1.609 sum 5.836 -9.723 8.921 14.428 Atomic orbital electron populations 1.22203 0.95717 1.03451 1.01394 1.21349 0.94838 0.80943 1.03570 1.57790 1.78317 1.24369 1.22795 1.18746 0.96947 0.90576 0.80091 1.21827 1.02367 1.27391 1.05623 0.90427 1.25812 1.00761 0.94724 0.97668 1.70082 1.38178 1.31264 1.17573 0.85653 0.80162 0.77504 0.79012 1.19935 1.21829 1.17223 1.01374 0.71971 0.72686 0.72831 1.93574 1.68647 1.76404 1.57530 1.93508 1.85859 1.33654 1.86215 1.61028 1.15966 1.33236 1.64927 1.22208 1.00882 0.84714 0.95366 1.21966 0.95700 0.98504 1.01116 1.21996 0.98625 0.96091 1.01027 1.23553 0.90515 0.98097 0.95194 1.90691 1.32636 1.19145 1.71693 0.93335 0.93481 0.88713 0.89842 0.89211 0.95782 0.97116 0.92776 0.89117 0.87361 0.86783 0.91672 0.88791 0.89938 0.92024 0.86820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.96 10.24 71.98 0.74 -4.22 16 2 C 0.12 3.79 6.06 86.38 0.52 4.32 16 3 N -0.99 -40.94 2.82 -519.86 -1.47 -42.41 16 4 C 0.26 13.28 5.43 85.63 0.47 13.75 16 5 C -0.53 -27.38 8.96 25.60 0.23 -27.15 16 6 H 0.08 3.69 5.77 -2.91 -0.02 3.67 16 7 C 0.01 0.50 5.46 84.65 0.46 0.96 16 8 N -0.93 -54.35 13.29 21.45 0.28 -54.06 16 9 Si 0.95 40.96 29.54 68.60 2.03 42.99 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 13 S 2.80 116.95 6.23 -56.49 -0.35 116.60 16 14 O -0.98 -38.25 15.89 -128.00 -2.03 -40.28 16 15 O -1.01 -52.12 16.40 -123.26 -2.02 -54.14 16 16 N -0.87 -31.33 4.03 -185.92 -0.75 -32.08 16 17 C 0.09 2.32 6.54 86.39 0.57 2.89 16 18 C -0.13 -2.79 6.14 30.78 0.19 -2.60 16 19 C -0.14 -3.12 6.07 30.68 0.19 -2.94 16 20 C 0.00 0.14 7.08 72.01 0.51 0.65 16 21 O -0.13 -5.28 11.48 -31.92 -0.37 -5.65 16 22 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.08 2.64 8.11 -2.39 -0.02 2.62 16 26 H 0.09 2.36 7.61 -2.39 -0.02 2.34 16 27 H 0.02 1.28 8.11 -2.39 -0.02 1.26 16 28 H 0.01 0.64 6.91 -2.39 -0.02 0.62 16 29 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.11 2.42 7.23 -2.39 -0.02 2.40 16 32 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 36 H 0.06 2.30 5.53 -2.39 -0.01 2.29 16 37 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -69.81 313.84 0.24 -69.57 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.05 Total: 13.83 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 3.87 Total: -14.35 kcal Atomic # 7 Polarization: -126.63 SS G_CDS: -1.93 Total: -128.56 kcal Atomic # 8 Polarization: -95.65 SS G_CDS: -4.42 Total: -100.07 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 16 Polarization: 116.95 SS G_CDS: -0.35 Total: 116.60 kcal Total: -69.81 0.24 -69.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337186697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.967 kcal (2) G-P(sol) polarization free energy of solvation -69.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds