Wall clock time and date at job start Tue Mar 31 2020 01:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46974 * 2 1 4 4 C 1.50700 * 109.47622 * 239.99885 * 2 1 3 5 5 H 1.07999 * 119.99792 * 240.00351 * 4 2 1 6 6 C 1.37872 * 119.99951 * 59.99948 * 4 2 1 7 7 N 1.31518 * 120.00143 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00085 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46705 * 90.00075 * 8 6 4 10 10 H 1.48502 * 109.47393 * 209.99933 * 8 6 4 11 11 H 1.48494 * 109.47271 * 330.00443 * 8 6 4 12 12 N 1.46501 * 109.46987 * 119.99617 * 2 1 3 13 13 C 1.46499 * 119.99760 * 60.00394 * 12 2 1 14 14 S 1.65604 * 120.00182 * 240.00459 * 12 2 1 15 15 O 1.42104 * 106.40080 * 156.45974 * 14 12 2 16 16 O 1.42098 * 106.40287 * 23.54032 * 14 12 2 17 17 N 1.65597 * 107.21702 * 269.99609 * 14 12 2 18 18 C 1.46505 * 119.99536 * 65.00589 * 17 14 12 19 19 H 1.08996 * 110.43980 * 26.08768 * 18 17 14 20 20 C 1.54807 * 110.60142 * 148.71389 * 18 17 14 21 21 C 1.54994 * 102.09860 * 139.60738 * 20 18 17 22 22 O 1.44586 * 103.58334 * 323.05571 * 21 20 18 23 23 C 1.43746 * 106.86832 * 39.87548 * 22 21 20 24 24 H 1.08997 * 109.46939 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47852 * 300.00265 * 1 2 3 26 26 H 1.09009 * 109.46835 * 60.00302 * 1 2 3 27 27 H 0.96997 * 119.99973 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47114 * 270.00081 * 13 12 2 29 29 H 1.08995 * 109.47574 * 30.00116 * 13 12 2 30 30 H 1.08995 * 109.47255 * 150.00432 * 13 12 2 31 31 H 0.97000 * 120.00306 * 244.99692 * 17 14 12 32 32 H 1.09007 * 110.90637 * 257.81120 * 20 18 17 33 33 H 1.09003 * 110.91046 * 21.37165 * 20 18 17 34 34 H 1.08999 * 110.61668 * 81.47212 * 21 20 18 35 35 H 1.08994 * 110.62187 * 204.31922 * 21 20 18 36 36 H 1.09002 * 109.87826 * 214.17174 * 23 22 21 37 37 H 1.08996 * 109.87812 * 93.17072 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3228 -1.1195 -4.0078 9 1 1.3451 -2.1616 -4.4122 10 1 2.4876 -0.1402 -5.1119 11 1 3.6311 -1.7566 -3.7118 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2864 15 8 2.8225 -0.5645 3.5260 16 8 2.6902 1.4974 2.1194 17 7 4.5436 -0.1041 1.8183 18 6 5.0138 0.4532 0.5476 19 1 4.4148 1.3194 0.2670 20 6 6.5106 0.8371 0.6418 21 6 7.0509 0.3788 -0.7367 22 8 6.3175 -0.8389 -1.0011 23 6 4.9674 -0.6167 -0.5606 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3635 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.7097 1.1617 -3.4844 28 1 0.7375 -2.1443 1.9993 29 1 1.5295 -2.5969 0.4709 30 1 2.4627 -2.5818 1.9865 31 1 5.1539 -0.6009 2.3855 32 1 6.6290 1.9133 0.7678 33 1 7.0007 0.2964 1.4516 34 1 6.8374 1.1265 -1.5005 35 1 8.1215 0.1813 -0.6831 36 1 4.5496 -1.5424 -0.1648 37 1 4.3596 -0.2620 -1.3929 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337759428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:02 Heat of formation + Delta-G solvation = -119.282180 kcal Electronic energy + Delta-G solvation = -21938.320409 eV Core-core repulsion = 18649.714550 eV Total energy + Delta-G solvation = -3288.605859 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.10451 -36.72317 -36.19761 -35.28841 -34.46323 -32.67147 -30.32187 -29.12358 -27.85966 -25.53989 -25.26838 -22.46900 -21.15499 -20.74378 -18.97170 -17.29069 -16.91629 -16.52174 -16.37229 -15.89557 -15.12291 -15.00553 -14.41709 -13.81877 -13.52374 -13.35290 -12.89007 -12.66063 -12.55741 -12.01945 -11.87070 -11.80859 -11.55433 -11.42439 -11.29202 -11.21345 -11.05747 -11.00401 -10.89192 -10.71387 -10.45757 -10.24830 -10.12026 -9.56687 -9.27881 -8.97346 -8.53082 -8.01024 -6.16241 -4.24472 1.20586 3.22030 3.30615 3.33699 3.46144 4.07036 4.29637 4.30410 4.69419 4.92357 5.12602 5.14336 5.21257 5.40864 5.52494 5.59068 5.73953 5.84081 5.91715 6.07483 6.15720 6.29587 6.52392 6.61259 6.68930 6.84197 6.84930 7.07941 7.13902 7.25524 7.47971 7.56856 7.72036 7.99105 8.19184 8.78127 9.41200 10.88139 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.010783 C = 0.007135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.686062 B = 2595.938812 C = 3923.508241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.266 3.734 3 H 0.058 0.942 4 C -0.529 4.529 5 H 0.068 0.932 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.268 1.268 12 N -0.991 5.991 13 C 0.108 3.892 14 S 2.780 3.220 15 O -0.999 6.999 16 O -0.982 6.982 17 N -1.122 6.122 18 C 0.124 3.876 19 H 0.109 0.891 20 C -0.158 4.158 21 C 0.046 3.954 22 O -0.385 6.385 23 C 0.028 3.972 24 H 0.032 0.968 25 H 0.011 0.989 26 H 0.092 0.908 27 H 0.264 0.736 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.408 0.592 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.116 -1.772 4.488 9.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.075 0.925 4 C -0.568 4.568 5 H 0.086 0.914 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.714 3.286 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.192 1.192 12 N -0.834 5.834 13 C -0.039 4.039 14 S 2.789 3.211 15 O -0.983 6.983 16 O -0.965 6.965 17 N -0.880 5.880 18 C 0.016 3.984 19 H 0.127 0.873 20 C -0.198 4.198 21 C -0.031 4.031 22 O -0.304 6.304 23 C -0.049 4.049 24 H 0.052 0.948 25 H 0.030 0.970 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.241 0.759 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.673 -1.221 4.902 9.187 hybrid contribution 0.513 -0.740 -0.893 1.268 sum 8.186 -1.960 4.008 9.323 Atomic orbital electron populations 1.22045 0.97955 0.99699 1.00720 1.18756 0.92028 0.92646 0.80239 0.92452 1.21437 1.32161 1.13242 0.89975 0.91380 1.24894 0.94895 0.94868 0.98887 1.69879 1.35863 1.22404 1.23910 0.86675 0.79652 0.79571 0.82730 1.20663 1.21190 1.19224 1.57708 1.64415 1.21474 1.39797 1.21176 0.98995 0.81841 1.01873 1.01878 0.72694 0.73747 0.72755 1.93551 1.85921 1.76135 1.42695 1.93580 1.83869 1.32500 1.86548 1.56158 1.30793 1.70448 1.30563 1.22150 0.95906 0.96913 0.83389 0.87318 1.23402 0.95066 1.02430 0.98865 1.23490 0.96902 0.87884 0.94830 1.88901 1.22558 1.34541 1.84356 1.24271 0.83237 0.99632 0.97797 0.94843 0.96953 0.88939 0.92565 0.93890 0.90126 0.93199 0.75885 0.89719 0.90157 0.92001 0.89410 0.89125 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.97 37.16 0.33 -2.97 16 2 C 0.27 6.06 2.62 -69.08 -0.18 5.88 16 3 H 0.06 1.45 6.91 -51.93 -0.36 1.09 16 4 C -0.53 -12.33 5.40 -34.44 -0.19 -12.52 16 5 H 0.07 1.54 5.99 -52.49 -0.31 1.22 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.88 -22.95 11.32 55.43 0.63 -22.33 16 8 Si 0.89 19.51 29.54 -169.99 -5.02 14.49 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 12 N -0.99 -19.46 3.12 -115.85 -0.36 -19.82 16 13 C 0.11 1.84 9.28 59.85 0.56 2.40 16 14 S 2.78 52.59 6.08 -107.50 -0.65 51.93 16 15 O -1.00 -20.05 17.21 -57.17 -0.98 -21.03 16 16 O -0.98 -21.66 16.08 -57.17 -0.92 -22.58 16 17 N -1.12 -17.27 5.52 -3.59 -0.02 -17.29 16 18 C 0.12 1.97 3.72 -66.40 -0.25 1.72 16 19 H 0.11 1.89 7.58 -51.93 -0.39 1.50 16 20 C -0.16 -1.96 6.87 -24.73 -0.17 -2.13 16 21 C 0.05 0.60 7.72 38.21 0.29 0.89 16 22 O -0.38 -6.50 11.54 -35.23 -0.41 -6.90 16 23 C 0.03 0.50 6.08 37.73 0.23 0.72 16 24 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 2.31 6.07 -51.92 -0.32 1.99 16 27 H 0.26 6.63 8.31 -40.82 -0.34 6.30 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.39 7.02 -51.93 -0.36 1.02 16 30 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 31 H 0.41 5.21 8.63 -34.47 -0.30 4.92 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.88 7.84 -51.93 -0.41 0.48 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.61 7.30 -51.93 -0.38 1.23 16 37 H 0.10 1.99 6.28 -51.93 -0.33 1.67 16 LS Contribution 305.81 15.07 4.61 4.61 Total: -1.00 -29.32 305.81 -7.80 -37.12 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.21 Total: 6.23 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 0.53 Total: -4.44 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.25 Total: -59.44 kcal Atomic # 8 Polarization: -48.20 SS G_CDS: -2.31 Total: -50.51 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 16 Polarization: 52.59 SS G_CDS: -0.65 Total: 51.93 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.32 -7.80 -37.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337759428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.160 kcal (2) G-P(sol) polarization free energy of solvation -29.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds