Wall clock time and date at job start Tue Mar 31 2020 01:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46974 * 2 1 4 4 C 1.50700 * 109.47622 * 239.99885 * 2 1 3 5 5 H 1.07999 * 119.99792 * 240.00351 * 4 2 1 6 6 C 1.37872 * 119.99951 * 59.99948 * 4 2 1 7 7 N 1.31518 * 120.00143 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00085 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46705 * 90.00075 * 8 6 4 10 10 H 1.48502 * 109.47393 * 209.99933 * 8 6 4 11 11 H 1.48494 * 109.47271 * 330.00443 * 8 6 4 12 12 N 1.46501 * 109.46987 * 119.99617 * 2 1 3 13 13 C 1.46499 * 119.99760 * 60.00394 * 12 2 1 14 14 S 1.65604 * 120.00182 * 240.00459 * 12 2 1 15 15 O 1.42104 * 106.40080 * 156.45974 * 14 12 2 16 16 O 1.42098 * 106.40287 * 23.54032 * 14 12 2 17 17 N 1.65597 * 107.21702 * 269.99609 * 14 12 2 18 18 C 1.46505 * 119.99536 * 65.00589 * 17 14 12 19 19 H 1.08996 * 110.43980 * 26.08768 * 18 17 14 20 20 C 1.54807 * 110.60142 * 148.71389 * 18 17 14 21 21 C 1.54994 * 102.09860 * 139.60738 * 20 18 17 22 22 O 1.44586 * 103.58334 * 323.05571 * 21 20 18 23 23 C 1.43746 * 106.86832 * 39.87548 * 22 21 20 24 24 H 1.08997 * 109.46939 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47852 * 300.00265 * 1 2 3 26 26 H 1.09009 * 109.46835 * 60.00302 * 1 2 3 27 27 H 0.96997 * 119.99973 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47114 * 270.00081 * 13 12 2 29 29 H 1.08995 * 109.47574 * 30.00116 * 13 12 2 30 30 H 1.08995 * 109.47255 * 150.00432 * 13 12 2 31 31 H 0.97000 * 120.00306 * 244.99692 * 17 14 12 32 32 H 1.09007 * 110.90637 * 257.81120 * 20 18 17 33 33 H 1.09003 * 110.91046 * 21.37165 * 20 18 17 34 34 H 1.08999 * 110.61668 * 81.47212 * 21 20 18 35 35 H 1.08994 * 110.62187 * 204.31922 * 21 20 18 36 36 H 1.09002 * 109.87826 * 214.17174 * 23 22 21 37 37 H 1.08996 * 109.87812 * 93.17072 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3228 -1.1195 -4.0078 9 1 1.3451 -2.1616 -4.4122 10 1 2.4876 -0.1402 -5.1119 11 1 3.6311 -1.7566 -3.7118 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2864 15 8 2.8225 -0.5645 3.5260 16 8 2.6902 1.4974 2.1194 17 7 4.5436 -0.1041 1.8183 18 6 5.0138 0.4532 0.5476 19 1 4.4148 1.3194 0.2670 20 6 6.5106 0.8371 0.6418 21 6 7.0509 0.3788 -0.7367 22 8 6.3175 -0.8389 -1.0011 23 6 4.9674 -0.6167 -0.5606 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3635 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.7097 1.1617 -3.4844 28 1 0.7375 -2.1443 1.9993 29 1 1.5295 -2.5969 0.4709 30 1 2.4627 -2.5818 1.9865 31 1 5.1539 -0.6009 2.3855 32 1 6.6290 1.9133 0.7678 33 1 7.0007 0.2964 1.4516 34 1 6.8374 1.1265 -1.5005 35 1 8.1215 0.1813 -0.6831 36 1 4.5496 -1.5424 -0.1648 37 1 4.3596 -0.2620 -1.3929 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337759428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:01 Heat of formation + Delta-G solvation = -142.115722 kcal Electronic energy + Delta-G solvation = -21939.310546 eV Core-core repulsion = 18649.714550 eV Total energy + Delta-G solvation = -3289.595996 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.33163 -38.33880 -37.87188 -36.91439 -35.77069 -34.48054 -31.45546 -30.88728 -29.17562 -27.19554 -26.98991 -23.62843 -22.60316 -22.29422 -20.45308 -18.81862 -18.41654 -18.31454 -17.76741 -17.13704 -16.76055 -16.43035 -15.95230 -15.22301 -15.03972 -14.89539 -14.49643 -13.97573 -13.86387 -13.68447 -13.40180 -13.29802 -13.17611 -13.01226 -12.98217 -12.71395 -12.64022 -12.48795 -12.32124 -12.19638 -12.04028 -11.86300 -11.81743 -11.09773 -10.83712 -10.47724 -10.25347 -9.64633 -8.05750 -6.16873 -0.31696 1.45429 1.50758 1.57733 1.97718 2.47319 2.59837 3.10889 3.24559 3.40193 3.58218 3.96832 4.06035 4.14938 4.22610 4.37618 4.46266 4.73987 4.82922 4.84957 4.92407 5.00587 5.01136 5.05061 5.18153 5.23868 5.26449 5.29965 5.64811 5.71933 5.85993 5.97528 6.09230 6.20130 6.33105 6.90946 7.50755 8.98741 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.010783 C = 0.007135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.686062 B = 2595.938812 C = 3923.508241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.273 3.727 3 H 0.029 0.971 4 C -0.515 4.515 5 H 0.076 0.924 6 C 0.027 3.973 7 N -0.914 5.914 8 Si 0.939 3.061 9 H -0.281 1.281 10 H -0.292 1.292 11 H -0.264 1.264 12 N -0.997 5.997 13 C 0.101 3.899 14 S 2.797 3.203 15 O -1.007 7.007 16 O -1.015 7.015 17 N -1.104 6.104 18 C 0.121 3.879 19 H 0.087 0.913 20 C -0.148 4.148 21 C 0.039 3.961 22 O -0.401 6.401 23 C 0.035 3.965 24 H 0.042 0.958 25 H 0.016 0.984 26 H 0.070 0.930 27 H 0.262 0.738 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.424 0.576 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.892 -2.803 5.129 11.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.169 3.831 3 H 0.046 0.954 4 C -0.555 4.555 5 H 0.094 0.906 6 C -0.173 4.173 7 N -0.554 5.554 8 Si 0.765 3.235 9 H -0.207 1.207 10 H -0.218 1.218 11 H -0.188 1.188 12 N -0.839 5.839 13 C -0.045 4.045 14 S 2.806 3.194 15 O -0.991 6.991 16 O -0.999 6.999 17 N -0.866 5.866 18 C 0.012 3.988 19 H 0.105 0.895 20 C -0.187 4.187 21 C -0.037 4.037 22 O -0.321 6.321 23 C -0.044 4.044 24 H 0.062 0.938 25 H 0.035 0.965 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.261 0.739 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.081 0.919 35 H 0.137 0.863 36 H 0.104 0.896 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.461 -2.280 5.566 11.211 hybrid contribution 0.021 -0.422 -1.050 1.132 sum 9.482 -2.702 4.517 10.845 Atomic orbital electron populations 1.21951 0.98185 0.99992 0.99832 1.18435 0.91814 0.91522 0.81357 0.95360 1.21595 1.31050 1.12827 0.90005 0.90647 1.25473 0.95303 0.95413 1.01156 1.69999 1.37446 1.23847 1.24079 0.85853 0.79164 0.78394 0.80040 1.20665 1.21794 1.18839 1.57601 1.65089 1.22479 1.38700 1.21372 1.00391 0.80419 1.02310 1.01234 0.73151 0.72803 0.72261 1.93534 1.86393 1.76078 1.43125 1.93540 1.84702 1.34688 1.86927 1.55733 1.29722 1.70498 1.30666 1.22136 0.98159 0.95682 0.82795 0.89463 1.23425 0.92010 1.03947 0.99326 1.23783 0.98200 0.86658 0.95074 1.88878 1.22118 1.36486 1.84591 1.23995 0.83616 0.99597 0.97157 0.93849 0.96507 0.91171 0.92891 0.93097 0.90305 0.90802 0.73944 0.87886 0.88009 0.91871 0.86297 0.89595 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.45 8.97 71.98 0.65 -5.81 16 2 C 0.27 12.52 2.62 44.24 0.12 12.64 16 3 H 0.03 1.48 6.91 -2.38 -0.02 1.46 16 4 C -0.52 -24.05 5.40 25.60 0.14 -23.91 16 5 H 0.08 3.36 5.99 -2.91 -0.02 3.34 16 6 C 0.03 1.32 5.30 84.65 0.45 1.77 16 7 N -0.91 -48.55 11.32 21.45 0.24 -48.30 16 8 Si 0.94 40.23 29.54 68.60 2.03 42.26 16 9 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 12 N -1.00 -38.42 3.12 -520.45 -1.62 -40.04 16 13 C 0.10 3.27 9.28 127.77 1.19 4.45 16 14 S 2.80 103.14 6.08 -56.49 -0.34 102.79 16 15 O -1.01 -38.62 17.21 -128.00 -2.20 -40.82 16 16 O -1.02 -44.91 16.08 -128.00 -2.06 -46.97 16 17 N -1.10 -32.03 5.52 -165.27 -0.91 -32.94 16 18 C 0.12 3.66 3.72 45.98 0.17 3.83 16 19 H 0.09 3.06 7.58 -2.39 -0.02 3.04 16 20 C -0.15 -3.22 6.87 31.89 0.22 -3.00 16 21 C 0.04 0.90 7.72 72.66 0.56 1.47 16 22 O -0.40 -12.80 11.54 -148.98 -1.72 -14.52 16 23 C 0.03 1.18 6.08 72.36 0.44 1.62 16 24 H 0.04 1.85 7.67 -2.39 -0.02 1.83 16 25 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 3.57 6.07 -2.38 -0.01 3.56 16 27 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 2.59 7.02 -2.39 -0.02 2.57 16 30 H 0.07 2.03 7.79 -2.39 -0.02 2.01 16 31 H 0.42 9.63 8.63 -96.75 -0.83 8.79 16 32 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.10 1.81 7.84 -2.39 -0.02 1.79 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.12 2.01 8.14 -2.39 -0.02 2.00 16 36 H 0.09 2.95 7.30 -2.39 -0.02 2.93 16 37 H 0.07 2.79 6.28 -2.39 -0.01 2.78 16 Total: -1.00 -62.34 305.81 -2.42 -64.76 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.25 Total: 20.73 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 3.93 Total: -6.95 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -2.29 Total: -121.28 kcal Atomic # 8 Polarization: -96.33 SS G_CDS: -5.98 Total: -102.31 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Atomic # 16 Polarization: 103.14 SS G_CDS: -0.34 Total: 102.79 kcal Total: -62.34 -2.42 -64.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337759428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.356 kcal (2) G-P(sol) polarization free energy of solvation -62.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds