Wall clock time and date at job start Tue Mar 31 2020 01:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47112 * 60.00201 * 8 6 4 10 10 H 1.48503 * 109.47000 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46939 * 299.99464 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.46499 * 120.00271 * 300.00476 * 12 2 1 14 14 S 1.65611 * 119.99775 * 120.00228 * 12 2 1 15 15 O 1.42102 * 106.39852 * 203.53941 * 14 12 2 16 16 O 1.42098 * 106.40004 * 336.45813 * 14 12 2 17 17 N 1.65599 * 107.21496 * 90.00128 * 14 12 2 18 18 C 1.46496 * 120.00123 * 65.00012 * 17 14 12 19 19 H 1.08994 * 110.43820 * 333.90874 * 18 17 14 20 20 C 1.54813 * 110.48618 * 211.21527 * 18 17 14 21 21 C 1.55000 * 102.09351 * 220.44475 * 20 18 17 22 22 O 1.44379 * 103.48723 * 37.02350 * 21 20 18 23 23 C 1.43736 * 106.98070 * 319.94021 * 22 21 20 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47057 * 89.99771 * 13 12 2 29 29 H 1.09006 * 109.46711 * 209.99932 * 13 12 2 30 30 H 1.08998 * 109.46853 * 329.99725 * 13 12 2 31 31 H 0.96998 * 119.99747 * 244.99670 * 17 14 12 32 32 H 1.08991 * 110.90876 * 338.64222 * 20 18 17 33 33 H 1.09000 * 110.90267 * 102.25091 * 20 18 17 34 34 H 1.09002 * 110.61377 * 278.52700 * 21 20 18 35 35 H 1.08992 * 110.62029 * 155.52772 * 21 20 18 36 36 H 1.09003 * 109.87843 * 267.09350 * 23 22 21 37 37 H 1.09003 * 110.00545 * 146.00858 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8063 -1.1210 4.0082 10 1 1.8270 -0.4199 5.2205 11 1 1.8257 -2.5202 4.0077 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 16 2.9704 0.1141 -2.2863 15 8 2.8227 -0.5647 -3.5259 16 8 2.6904 1.4972 -2.1193 17 7 4.5437 -0.1044 -1.8180 18 6 5.1356 -1.4443 -1.8415 19 1 4.3618 -2.2041 -1.7326 20 6 6.1995 -1.5862 -0.7259 21 6 7.3173 -2.3855 -1.4430 22 8 7.3035 -1.8537 -2.7852 23 6 5.9256 -1.6621 -3.1467 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7090 1.1614 3.4844 28 1 0.7374 -2.1443 -1.9993 29 1 2.4628 -2.5819 -1.9864 30 1 1.5294 -2.5969 -0.4708 31 1 5.0733 0.6548 -1.5282 32 1 6.5628 -0.6090 -0.4082 33 1 5.8029 -2.1464 0.1208 34 1 7.0840 -3.4502 -1.4496 35 1 8.2822 -2.2059 -0.9689 36 1 5.5515 -2.5462 -3.6630 37 1 5.8269 -0.7878 -3.7900 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337759430.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:04 Heat of formation + Delta-G solvation = -119.857296 kcal Electronic energy + Delta-G solvation = -21391.673767 eV Core-core repulsion = 18103.042969 eV Total energy + Delta-G solvation = -3288.630798 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.45014 -36.72123 -36.21162 -35.30384 -34.67023 -32.66099 -30.49484 -29.14813 -28.18628 -25.56656 -25.23396 -22.77621 -21.40080 -20.82721 -19.00345 -17.33994 -16.96594 -16.77572 -16.33741 -16.04873 -15.45744 -15.15860 -14.59891 -14.13587 -13.50034 -13.31519 -13.05864 -12.81374 -12.73430 -12.15979 -12.01651 -11.88056 -11.59455 -11.51067 -11.41989 -11.27496 -11.19732 -11.08105 -10.93013 -10.86591 -10.49418 -10.26892 -10.15265 -9.89956 -9.39634 -9.15676 -8.53376 -8.03275 -6.14537 -4.23517 1.18333 3.20299 3.26339 3.27242 3.39120 3.91258 4.05266 4.29907 4.51263 4.81505 4.84776 4.96708 5.09693 5.15920 5.19020 5.34618 5.57244 5.64484 5.75666 5.86132 5.97829 6.08755 6.14761 6.32067 6.59408 6.77645 6.83009 6.83779 7.06552 7.16608 7.46394 7.56737 7.73234 7.99779 8.20360 8.78738 9.42754 10.90484 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017198 B = 0.007585 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.669313 B = 3690.563193 C = 4764.572716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.527 4.527 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.990 5.990 13 C 0.104 3.896 14 S 2.780 3.220 15 O -0.996 6.996 16 O -0.979 6.979 17 N -1.118 6.118 18 C 0.127 3.873 19 H 0.099 0.901 20 C -0.158 4.158 21 C 0.045 3.955 22 O -0.380 6.380 23 C 0.032 3.968 24 H 0.012 0.988 25 H 0.032 0.968 26 H 0.092 0.908 27 H 0.265 0.735 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.414 0.586 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.027 -6.342 -5.690 11.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.566 4.566 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.833 5.833 13 C -0.042 4.042 14 S 2.788 3.212 15 O -0.980 6.980 16 O -0.964 6.964 17 N -0.876 5.876 18 C 0.019 3.981 19 H 0.117 0.883 20 C -0.197 4.197 21 C -0.032 4.032 22 O -0.298 6.298 23 C -0.047 4.047 24 H 0.031 0.969 25 H 0.051 0.949 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.248 0.752 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.700 -5.824 -6.517 11.648 hybrid contribution 0.394 -0.432 1.600 1.704 sum 8.094 -6.256 -4.917 11.350 Atomic orbital electron populations 1.22053 0.97934 0.99666 1.00785 1.18731 0.91903 0.92749 0.80094 0.92344 1.21310 1.32023 1.13121 0.90151 0.92009 1.24932 0.94955 0.94972 0.98999 1.69874 1.36053 1.22508 1.23970 0.86587 0.79088 0.79660 0.82169 1.20300 1.21240 1.20277 1.57717 1.64392 1.21327 1.39840 1.21249 0.99012 0.82080 1.01868 1.01918 0.72602 0.73221 0.73416 1.93553 1.86006 1.76308 1.42095 1.93601 1.83512 1.32417 1.86829 1.56181 1.32409 1.14055 1.84909 1.22028 0.96822 0.84636 0.94649 0.88331 1.23432 0.95369 1.02533 0.98365 1.23566 0.99665 0.97294 0.82675 1.88867 1.24835 1.85009 1.31120 1.23782 0.81649 1.02299 0.96965 0.96869 0.94866 0.88910 0.92531 0.93678 0.93409 0.90086 0.75191 0.89456 0.88929 0.91944 0.88833 0.91448 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.97 37.16 0.33 -3.05 16 2 C 0.27 6.36 2.62 -69.08 -0.18 6.18 16 3 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 4 C -0.53 -12.99 7.99 -34.44 -0.28 -13.27 16 5 H 0.06 1.46 7.33 -52.49 -0.38 1.07 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -23.90 11.32 55.43 0.63 -23.27 16 8 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 N -0.99 -19.69 3.12 -115.85 -0.36 -20.05 16 13 C 0.10 1.76 9.09 59.85 0.54 2.30 16 14 S 2.78 52.65 6.03 -107.50 -0.65 52.00 16 15 O -1.00 -19.54 16.97 -57.17 -0.97 -20.51 16 16 O -0.98 -21.95 16.70 -57.17 -0.95 -22.90 16 17 N -1.12 -17.10 5.52 -3.59 -0.02 -17.12 16 18 C 0.13 1.70 3.60 -66.40 -0.24 1.47 16 19 H 0.10 1.27 6.22 -51.93 -0.32 0.95 16 20 C -0.16 -1.84 6.87 -24.72 -0.17 -2.01 16 21 C 0.04 0.47 7.72 38.21 0.29 0.77 16 22 O -0.38 -5.02 11.52 -35.23 -0.41 -5.43 16 23 C 0.03 0.41 7.50 37.74 0.28 0.70 16 24 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 26 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 27 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.68 6.21 -51.93 -0.32 0.35 16 30 H 0.08 1.38 7.02 -51.93 -0.36 1.02 16 31 H 0.41 5.76 8.62 -34.47 -0.30 5.46 16 32 H 0.09 1.01 7.83 -51.93 -0.41 0.61 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.24 7.93 -51.93 -0.41 0.83 16 LS Contribution 310.68 15.07 4.68 4.68 Total: -1.00 -30.56 310.68 -7.83 -38.39 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.25 Total: 4.81 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 0.50 Total: -5.36 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 0.25 Total: -60.43 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -2.33 Total: -48.84 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 52.65 SS G_CDS: -0.65 Total: 52.00 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.56 -7.83 -38.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337759430.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.469 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds