Wall clock time and date at job start Tue Mar 31 2020 01:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47112 * 60.00201 * 8 6 4 10 10 H 1.48503 * 109.47000 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46939 * 299.99464 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.46499 * 120.00271 * 300.00476 * 12 2 1 14 14 S 1.65611 * 119.99775 * 120.00228 * 12 2 1 15 15 O 1.42102 * 106.39852 * 203.53941 * 14 12 2 16 16 O 1.42098 * 106.40004 * 336.45813 * 14 12 2 17 17 N 1.65599 * 107.21496 * 90.00128 * 14 12 2 18 18 C 1.46496 * 120.00123 * 65.00012 * 17 14 12 19 19 H 1.08994 * 110.43820 * 333.90874 * 18 17 14 20 20 C 1.54813 * 110.48618 * 211.21527 * 18 17 14 21 21 C 1.55000 * 102.09351 * 220.44475 * 20 18 17 22 22 O 1.44379 * 103.48723 * 37.02350 * 21 20 18 23 23 C 1.43736 * 106.98070 * 319.94021 * 22 21 20 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47057 * 89.99771 * 13 12 2 29 29 H 1.09006 * 109.46711 * 209.99932 * 13 12 2 30 30 H 1.08998 * 109.46853 * 329.99725 * 13 12 2 31 31 H 0.96998 * 119.99747 * 244.99670 * 17 14 12 32 32 H 1.08991 * 110.90876 * 338.64222 * 20 18 17 33 33 H 1.09000 * 110.90267 * 102.25091 * 20 18 17 34 34 H 1.09002 * 110.61377 * 278.52700 * 21 20 18 35 35 H 1.08992 * 110.62029 * 155.52772 * 21 20 18 36 36 H 1.09003 * 109.87843 * 267.09350 * 23 22 21 37 37 H 1.09003 * 110.00545 * 146.00858 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8063 -1.1210 4.0082 10 1 1.8270 -0.4199 5.2205 11 1 1.8257 -2.5202 4.0077 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 16 2.9704 0.1141 -2.2863 15 8 2.8227 -0.5647 -3.5259 16 8 2.6904 1.4972 -2.1193 17 7 4.5437 -0.1044 -1.8180 18 6 5.1356 -1.4443 -1.8415 19 1 4.3618 -2.2041 -1.7326 20 6 6.1995 -1.5862 -0.7259 21 6 7.3173 -2.3855 -1.4430 22 8 7.3035 -1.8537 -2.7852 23 6 5.9256 -1.6621 -3.1467 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7090 1.1614 3.4844 28 1 0.7374 -2.1443 -1.9993 29 1 2.4628 -2.5819 -1.9864 30 1 1.5294 -2.5969 -0.4708 31 1 5.0733 0.6548 -1.5282 32 1 6.5628 -0.6090 -0.4082 33 1 5.8029 -2.1464 0.1208 34 1 7.0840 -3.4502 -1.4496 35 1 8.2822 -2.2059 -0.9689 36 1 5.5515 -2.5462 -3.6630 37 1 5.8269 -0.7878 -3.7900 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337759430.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:03 Heat of formation + Delta-G solvation = -143.655785 kcal Electronic energy + Delta-G solvation = -21392.705747 eV Core-core repulsion = 18103.042969 eV Total energy + Delta-G solvation = -3289.662778 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42436 -38.33223 -37.89557 -36.91788 -35.82322 -34.49979 -31.47459 -30.93490 -29.22027 -27.24082 -26.99477 -23.68954 -22.66765 -22.37468 -20.45514 -18.81796 -18.49137 -18.24937 -17.81800 -17.11560 -16.95139 -16.42861 -16.08657 -15.36439 -15.02953 -14.87078 -14.48821 -14.09889 -13.89129 -13.70531 -13.45164 -13.23963 -13.19704 -13.14825 -12.97627 -12.77181 -12.66738 -12.47385 -12.37914 -12.21496 -12.11257 -11.94476 -11.80039 -11.20187 -10.88994 -10.47492 -10.33772 -9.67209 -8.07258 -6.22292 -0.32405 1.48653 1.49178 1.56432 1.95928 2.47111 2.58980 2.99599 3.21551 3.40491 3.50684 3.88806 3.91538 4.04902 4.18194 4.34672 4.36004 4.69885 4.78791 4.80126 4.85622 4.92026 4.97431 4.99833 5.06228 5.15838 5.21256 5.27248 5.61726 5.66609 5.84666 5.87136 6.03733 6.14419 6.29915 6.86992 7.47512 8.97279 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017198 B = 0.007585 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.669313 B = 3690.563193 C = 4764.572716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.527 4.527 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.268 1.268 10 H -0.294 1.294 11 H -0.268 1.268 12 N -0.995 5.995 13 C 0.096 3.904 14 S 2.796 3.204 15 O -1.002 7.002 16 O -1.019 7.019 17 N -1.110 6.110 18 C 0.117 3.883 19 H 0.107 0.893 20 C -0.156 4.156 21 C 0.045 3.955 22 O -0.396 6.396 23 C 0.032 3.968 24 H 0.017 0.983 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.262 0.738 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.421 0.579 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.335 -8.408 -5.513 13.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.169 3.831 3 H 0.041 0.959 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.785 3.215 9 H -0.193 1.193 10 H -0.220 1.220 11 H -0.193 1.193 12 N -0.837 5.837 13 C -0.049 4.049 14 S 2.805 3.195 15 O -0.985 6.985 16 O -1.003 7.003 17 N -0.870 5.870 18 C 0.009 3.991 19 H 0.124 0.876 20 C -0.195 4.195 21 C -0.031 4.031 22 O -0.315 6.315 23 C -0.047 4.047 24 H 0.036 0.964 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.256 0.744 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.098 0.902 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.016 -7.916 -6.360 13.579 hybrid contribution 0.029 0.193 1.481 1.494 sum 9.045 -7.723 -4.878 12.855 Atomic orbital electron populations 1.21948 0.98034 1.00087 0.99838 1.18396 0.91853 0.91423 0.81476 0.95863 1.21598 1.31494 1.13122 0.90369 0.90762 1.25719 0.95248 0.95606 1.01959 1.70026 1.37532 1.24102 1.24319 0.85594 0.78856 0.78676 0.78360 1.19344 1.21999 1.19344 1.57589 1.65090 1.22504 1.38540 1.21479 1.00580 0.80436 1.02420 1.01261 0.73079 0.72045 0.73125 1.93539 1.86491 1.76166 1.42307 1.93545 1.84541 1.34979 1.87279 1.55876 1.30985 1.15490 1.84696 1.22318 0.97535 0.83366 0.95887 0.87560 1.23447 0.95197 1.02851 0.98041 1.23757 1.00143 0.97967 0.81236 1.88853 1.24723 1.85400 1.32543 1.23752 0.81787 1.02510 0.96615 0.96403 0.93633 0.91288 0.92846 0.93014 0.90492 0.90156 0.74401 0.89695 0.88247 0.90121 0.87074 0.90190 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.56 8.97 71.98 0.65 -5.91 16 2 C 0.27 12.97 2.62 44.25 0.12 13.08 16 3 H 0.02 1.28 6.91 -2.39 -0.02 1.26 16 4 C -0.53 -25.51 7.99 25.60 0.20 -25.30 16 5 H 0.07 3.34 7.33 -2.91 -0.02 3.32 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -50.29 11.32 21.45 0.24 -50.05 16 8 Si 0.96 39.78 29.54 68.60 2.03 41.80 16 9 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 10 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 12 N -1.00 -38.61 3.12 -520.45 -1.62 -40.24 16 13 C 0.10 3.03 9.09 127.77 1.16 4.19 16 14 S 2.80 104.26 6.03 -56.49 -0.34 103.92 16 15 O -1.00 -37.96 16.97 -128.00 -2.17 -40.13 16 16 O -1.02 -46.40 16.70 -128.00 -2.14 -48.54 16 17 N -1.11 -32.70 5.52 -165.27 -0.91 -33.61 16 18 C 0.12 2.86 3.60 45.99 0.17 3.03 16 19 H 0.11 2.43 6.22 -2.39 -0.01 2.42 16 20 C -0.16 -3.23 6.87 31.90 0.22 -3.01 16 21 C 0.05 0.81 7.72 72.67 0.56 1.37 16 22 O -0.40 -9.56 11.52 -148.98 -1.72 -11.27 16 23 C 0.03 0.77 7.50 72.36 0.54 1.31 16 24 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.04 1.96 7.67 -2.39 -0.02 1.95 16 26 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 27 H 0.26 13.78 8.31 -92.71 -0.77 13.00 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.95 6.21 -2.38 -0.01 1.94 16 30 H 0.08 2.55 7.02 -2.39 -0.02 2.53 16 31 H 0.42 11.42 8.62 -96.75 -0.83 10.59 16 32 H 0.08 1.79 7.83 -2.39 -0.02 1.77 16 33 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 2.11 7.93 -2.39 -0.02 2.09 16 Total: -1.00 -64.48 310.68 -2.32 -66.81 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.25 Total: 21.39 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 4.07 Total: -10.07 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -2.29 Total: -123.90 kcal Atomic # 8 Polarization: -93.92 SS G_CDS: -6.03 Total: -99.94 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.80 kcal Atomic # 16 Polarization: 104.26 SS G_CDS: -0.34 Total: 103.92 kcal Total: -64.48 -2.32 -66.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337759430.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.850 kcal (2) G-P(sol) polarization free energy of solvation -64.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds