Wall clock time and date at job start Tue Mar 31 2020 01:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47187 * 2 1 4 4 C 1.50698 * 109.47487 * 120.00341 * 2 1 3 5 5 H 1.07995 * 120.00466 * 95.22678 * 4 2 1 6 6 C 1.37875 * 120.00042 * 275.23041 * 4 2 1 7 7 N 1.31518 * 119.99846 * 355.14795 * 6 4 2 8 8 Si 1.86800 * 120.00162 * 175.14629 * 6 4 2 9 9 H 1.48494 * 109.47037 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47277 * 239.99801 * 8 6 4 11 11 H 1.48509 * 109.46943 * 120.00271 * 8 6 4 12 12 N 1.46506 * 109.47108 * 240.00589 * 2 1 3 13 13 C 1.46504 * 119.99439 * 299.99400 * 12 2 1 14 14 S 1.65596 * 120.00287 * 120.00093 * 12 2 1 15 15 O 1.42101 * 106.40219 * 203.53897 * 14 12 2 16 16 O 1.42105 * 106.39999 * 336.45415 * 14 12 2 17 17 N 1.65599 * 107.22152 * 89.99637 * 14 12 2 18 18 C 1.46500 * 119.99678 * 64.99976 * 17 14 12 19 19 H 1.09000 * 110.43979 * 26.09362 * 18 17 14 20 20 C 1.54811 * 110.48668 * 148.77933 * 18 17 14 21 21 C 1.54993 * 102.09094 * 97.79425 * 20 18 17 22 22 O 1.44378 * 103.49065 * 37.02627 * 21 20 18 23 23 C 1.43743 * 106.97655 * 319.93691 * 22 21 20 24 24 H 1.08994 * 109.47660 * 55.10330 * 1 2 3 25 25 H 1.08996 * 109.47198 * 175.10607 * 1 2 3 26 26 H 1.09009 * 109.47243 * 295.10067 * 1 2 3 27 27 H 0.97002 * 120.00246 * 5.16739 * 7 6 4 28 28 H 1.09005 * 109.46619 * 90.00317 * 13 12 2 29 29 H 1.09001 * 109.47219 * 209.99741 * 13 12 2 30 30 H 1.08999 * 109.47470 * 330.00676 * 13 12 2 31 31 H 0.96993 * 119.99725 * 245.00316 * 17 14 12 32 32 H 1.08999 * 110.90709 * 215.99409 * 20 18 17 33 33 H 1.09004 * 110.90783 * 339.59947 * 20 18 17 34 34 H 1.09004 * 110.62157 * 278.52109 * 21 20 18 35 35 H 1.09001 * 110.75321 * 155.59099 * 21 20 18 36 36 H 1.09000 * 109.88009 * 267.09434 * 23 22 21 37 37 H 1.08997 * 110.00461 * 146.00881 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.2927 -1.7574 1.1810 6 6 2.1596 -0.0239 2.4192 7 7 1.9342 1.2713 2.4580 8 14 2.6519 -0.9332 3.9749 9 1 2.8457 -2.3728 3.6665 10 1 1.5822 -0.7855 4.9942 11 1 3.9188 -0.3642 4.5010 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4281 14 16 2.9703 0.1143 -2.2863 15 8 2.8227 -0.5644 -3.5260 16 8 2.6902 1.4974 -2.1193 17 7 4.5437 -0.1041 -1.8181 18 6 5.1357 -1.4439 -1.8417 19 1 4.6324 -2.0695 -2.5789 20 6 6.6521 -1.3611 -2.1420 21 6 7.2693 -1.4481 -0.7229 22 8 6.4092 -2.3841 -0.0383 23 6 5.0620 -2.0908 -0.4450 24 1 -0.3634 0.5879 -0.8428 25 1 -0.3633 -1.0239 -0.0877 26 1 -0.3634 0.4360 0.9307 27 1 1.6063 1.7304 1.6689 28 1 0.7375 -2.1443 -1.9994 29 1 2.4628 -2.5818 -1.9865 30 1 1.5294 -2.5968 -0.4709 31 1 5.0732 0.6551 -1.5283 32 1 6.9731 -2.2011 -2.7580 33 1 6.9032 -0.4131 -2.6179 34 1 7.2443 -0.4747 -0.2331 35 1 8.2902 -1.8275 -0.7684 36 1 4.6044 -1.3976 0.2608 37 1 4.4784 -3.0102 -0.4926 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337759431.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:06 Heat of formation + Delta-G solvation = -124.855055 kcal Electronic energy + Delta-G solvation = -21795.985346 eV Core-core repulsion = 18507.137828 eV Total energy + Delta-G solvation = -3288.847517 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.34906 -36.79803 -36.39473 -35.36654 -34.56932 -32.76069 -30.34111 -29.22493 -28.15706 -25.69785 -24.81389 -22.70486 -21.26260 -21.04702 -19.22376 -17.52762 -17.12710 -16.80231 -16.47562 -15.87285 -15.18706 -14.88237 -14.55286 -13.91808 -13.71822 -13.59564 -13.15605 -12.95330 -12.45137 -12.11510 -12.04297 -11.87936 -11.66709 -11.49096 -11.45616 -11.41888 -11.25706 -11.10515 -11.03480 -10.79333 -10.62906 -10.20784 -10.15746 -9.52438 -9.37327 -9.09654 -8.47821 -7.93777 -6.47946 -4.23437 1.13654 3.32390 3.39025 3.41340 3.53651 3.95967 4.14807 4.41883 4.47015 4.82788 4.85881 5.01084 5.21096 5.24285 5.31521 5.43210 5.56571 5.69640 5.77092 5.87566 6.01903 6.14667 6.20675 6.36597 6.42525 6.50785 6.56153 6.75299 6.91396 7.03785 7.21186 7.30784 7.56484 7.99892 8.33252 8.70509 9.47806 10.88497 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014649 B = 0.009794 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.955408 B = 2858.237045 C = 4066.288081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.249 3.751 3 H 0.060 0.940 4 C -0.601 4.601 5 H 0.060 0.940 6 C 0.026 3.974 7 N -0.905 5.905 8 Si 1.070 2.930 9 H -0.287 1.287 10 H -0.287 1.287 11 H -0.287 1.287 12 N -0.985 5.985 13 C 0.104 3.896 14 S 2.779 3.221 15 O -0.998 6.998 16 O -0.982 6.982 17 N -1.118 6.118 18 C 0.121 3.879 19 H 0.102 0.898 20 C -0.158 4.158 21 C 0.046 3.954 22 O -0.377 6.377 23 C 0.023 3.977 24 H 0.022 0.978 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.273 0.727 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.413 0.587 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.913 -6.078 -7.183 11.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.146 3.854 3 H 0.078 0.922 4 C -0.640 4.640 5 H 0.078 0.922 6 C -0.180 4.180 7 N -0.540 5.540 8 Si 0.898 3.102 9 H -0.213 1.213 10 H -0.214 1.214 11 H -0.213 1.213 12 N -0.828 5.828 13 C -0.043 4.043 14 S 2.789 3.211 15 O -0.982 6.982 16 O -0.966 6.966 17 N -0.876 5.876 18 C 0.012 3.988 19 H 0.120 0.880 20 C -0.197 4.197 21 C -0.031 4.031 22 O -0.296 6.296 23 C -0.055 4.055 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.247 0.753 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.931 -5.685 -6.290 10.951 hybrid contribution -0.153 0.040 -1.235 1.245 sum 6.778 -5.645 -7.525 11.595 Atomic orbital electron populations 1.22125 0.98662 0.99850 0.99554 1.18887 0.91066 0.93490 0.81964 0.92228 1.22154 1.48683 0.98612 0.94593 0.92183 1.25781 0.94691 0.95921 1.01651 1.70738 1.41313 1.08228 1.33736 0.83530 0.76800 0.74730 0.75135 1.21323 1.21368 1.21317 1.57768 1.64535 1.21169 1.39315 1.21241 0.99058 0.82151 1.01823 1.01934 0.72664 0.73167 0.73378 1.93543 1.86010 1.76371 1.42257 1.93594 1.83615 1.32518 1.86883 1.56122 1.32416 1.14222 1.84859 1.22053 0.95113 0.83715 0.97907 0.88034 1.23400 0.94123 1.03730 0.98495 1.23534 0.94973 0.94042 0.90575 1.88864 1.16822 1.55508 1.68378 1.24025 0.84411 1.01733 0.95350 0.95914 0.93723 0.92387 0.91500 0.93819 0.93237 0.90136 0.75338 0.89501 0.89465 0.92049 0.89137 0.88661 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.25 37.15 0.34 -2.74 16 2 C 0.25 5.74 2.35 -69.08 -0.16 5.57 16 3 H 0.06 1.54 5.44 -51.93 -0.28 1.26 16 4 C -0.60 -14.69 7.84 -34.44 -0.27 -14.96 16 5 H 0.06 1.44 6.66 -52.49 -0.35 1.09 16 6 C 0.03 0.67 5.45 -17.82 -0.10 0.58 16 7 N -0.90 -25.47 13.63 55.43 0.76 -24.72 16 8 Si 1.07 23.75 29.91 -169.99 -5.08 18.67 16 9 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.99 -19.36 3.12 -115.85 -0.36 -19.72 16 13 C 0.10 1.73 9.22 59.85 0.55 2.28 16 14 S 2.78 52.97 6.08 -107.50 -0.65 52.32 16 15 O -1.00 -19.87 16.59 -57.17 -0.95 -20.82 16 16 O -0.98 -22.02 16.70 -57.17 -0.95 -22.97 16 17 N -1.12 -17.46 5.47 -3.59 -0.02 -17.48 16 18 C 0.12 1.67 3.73 -66.40 -0.25 1.42 16 19 H 0.10 1.35 7.23 -51.93 -0.38 0.97 16 20 C -0.16 -1.74 6.80 -24.72 -0.17 -1.91 16 21 C 0.05 0.54 7.72 38.21 0.29 0.84 16 22 O -0.38 -5.85 11.52 -35.23 -0.41 -6.26 16 23 C 0.02 0.36 7.51 37.73 0.28 0.64 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.04 0.89 7.51 -51.93 -0.39 0.50 16 26 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 27 H 0.27 7.76 6.66 -40.82 -0.27 7.48 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.71 7.44 -51.93 -0.39 0.33 16 30 H 0.08 1.36 6.63 -51.93 -0.34 1.01 16 31 H 0.41 5.90 8.84 -34.46 -0.30 5.59 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.85 8.06 -51.93 -0.42 0.43 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 1.76 7.63 -51.93 -0.40 1.37 16 37 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 313.28 15.07 4.72 4.72 Total: -1.00 -31.20 313.28 -7.70 -38.90 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.27 Total: 5.64 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 0.53 Total: -8.27 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.37 Total: -61.92 kcal Atomic # 8 Polarization: -47.74 SS G_CDS: -2.31 Total: -50.05 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -5.08 Total: 18.67 kcal Atomic # 16 Polarization: 52.97 SS G_CDS: -0.65 Total: 52.32 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.20 -7.70 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337759431.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.956 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds