Wall clock time and date at job start Tue Mar 31 2020 01:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47187 * 2 1 4 4 C 1.50698 * 109.47487 * 120.00341 * 2 1 3 5 5 H 1.07995 * 120.00466 * 95.22678 * 4 2 1 6 6 C 1.37875 * 120.00042 * 275.23041 * 4 2 1 7 7 N 1.31518 * 119.99846 * 355.14795 * 6 4 2 8 8 Si 1.86800 * 120.00162 * 175.14629 * 6 4 2 9 9 H 1.48494 * 109.47037 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47277 * 239.99801 * 8 6 4 11 11 H 1.48509 * 109.46943 * 120.00271 * 8 6 4 12 12 N 1.46506 * 109.47108 * 240.00589 * 2 1 3 13 13 C 1.46504 * 119.99439 * 299.99400 * 12 2 1 14 14 S 1.65596 * 120.00287 * 120.00093 * 12 2 1 15 15 O 1.42101 * 106.40219 * 203.53897 * 14 12 2 16 16 O 1.42105 * 106.39999 * 336.45415 * 14 12 2 17 17 N 1.65599 * 107.22152 * 89.99637 * 14 12 2 18 18 C 1.46500 * 119.99678 * 64.99976 * 17 14 12 19 19 H 1.09000 * 110.43979 * 26.09362 * 18 17 14 20 20 C 1.54811 * 110.48668 * 148.77933 * 18 17 14 21 21 C 1.54993 * 102.09094 * 97.79425 * 20 18 17 22 22 O 1.44378 * 103.49065 * 37.02627 * 21 20 18 23 23 C 1.43743 * 106.97655 * 319.93691 * 22 21 20 24 24 H 1.08994 * 109.47660 * 55.10330 * 1 2 3 25 25 H 1.08996 * 109.47198 * 175.10607 * 1 2 3 26 26 H 1.09009 * 109.47243 * 295.10067 * 1 2 3 27 27 H 0.97002 * 120.00246 * 5.16739 * 7 6 4 28 28 H 1.09005 * 109.46619 * 90.00317 * 13 12 2 29 29 H 1.09001 * 109.47219 * 209.99741 * 13 12 2 30 30 H 1.08999 * 109.47470 * 330.00676 * 13 12 2 31 31 H 0.96993 * 119.99725 * 245.00316 * 17 14 12 32 32 H 1.08999 * 110.90709 * 215.99409 * 20 18 17 33 33 H 1.09004 * 110.90783 * 339.59947 * 20 18 17 34 34 H 1.09004 * 110.62157 * 278.52109 * 21 20 18 35 35 H 1.09001 * 110.75321 * 155.59099 * 21 20 18 36 36 H 1.09000 * 109.88009 * 267.09434 * 23 22 21 37 37 H 1.08997 * 110.00461 * 146.00881 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.2927 -1.7574 1.1810 6 6 2.1596 -0.0239 2.4192 7 7 1.9342 1.2713 2.4580 8 14 2.6519 -0.9332 3.9749 9 1 2.8457 -2.3728 3.6665 10 1 1.5822 -0.7855 4.9942 11 1 3.9188 -0.3642 4.5010 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4281 14 16 2.9703 0.1143 -2.2863 15 8 2.8227 -0.5644 -3.5260 16 8 2.6902 1.4974 -2.1193 17 7 4.5437 -0.1041 -1.8181 18 6 5.1357 -1.4439 -1.8417 19 1 4.6324 -2.0695 -2.5789 20 6 6.6521 -1.3611 -2.1420 21 6 7.2693 -1.4481 -0.7229 22 8 6.4092 -2.3841 -0.0383 23 6 5.0620 -2.0908 -0.4450 24 1 -0.3634 0.5879 -0.8428 25 1 -0.3633 -1.0239 -0.0877 26 1 -0.3634 0.4360 0.9307 27 1 1.6063 1.7304 1.6689 28 1 0.7375 -2.1443 -1.9994 29 1 2.4628 -2.5818 -1.9865 30 1 1.5294 -2.5968 -0.4709 31 1 5.0732 0.6551 -1.5283 32 1 6.9731 -2.2011 -2.7580 33 1 6.9032 -0.4131 -2.6179 34 1 7.2443 -0.4747 -0.2331 35 1 8.2902 -1.8275 -0.7684 36 1 4.6044 -1.3976 0.2608 37 1 4.4784 -3.0102 -0.4926 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337759431.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:06 Heat of formation + Delta-G solvation = -149.386679 kcal Electronic energy + Delta-G solvation = -21797.049117 eV Core-core repulsion = 18507.137828 eV Total energy + Delta-G solvation = -3289.911288 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.44561 -38.43354 -38.07872 -36.99457 -35.79581 -34.61744 -31.37723 -30.97353 -29.32645 -27.19449 -26.75553 -23.74045 -22.86148 -22.33242 -20.69672 -19.06421 -18.78981 -18.45580 -17.73915 -17.00940 -16.70399 -16.04157 -15.82832 -15.62549 -15.41390 -15.19503 -14.69531 -14.14015 -13.69112 -13.60553 -13.49725 -13.33999 -13.29025 -13.20083 -13.11008 -12.99237 -12.59124 -12.56742 -12.30745 -12.12440 -12.06684 -11.96423 -11.89458 -10.96133 -10.65479 -10.59881 -10.43084 -9.61894 -8.52881 -6.27453 -0.37958 1.58223 1.63514 1.78857 1.88997 2.52275 2.59235 3.04149 3.25471 3.33200 3.49722 3.83236 3.95490 3.99290 4.25227 4.30141 4.35313 4.51519 4.68870 4.74979 4.77808 4.85011 4.86154 4.93573 5.00538 5.06836 5.12337 5.18911 5.32609 5.48285 5.74245 5.85887 6.04987 6.11255 6.35694 6.64749 7.50778 8.83263 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014649 B = 0.009794 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.955408 B = 2858.237045 C = 4066.288081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.252 3.748 3 H 0.028 0.972 4 C -0.587 4.587 5 H 0.067 0.933 6 C -0.023 4.023 7 N -0.939 5.939 8 Si 1.109 2.891 9 H -0.267 1.267 10 H -0.286 1.286 11 H -0.290 1.290 12 N -0.991 5.991 13 C 0.096 3.904 14 S 2.796 3.204 15 O -1.003 7.003 16 O -1.020 7.020 17 N -1.110 6.110 18 C 0.114 3.886 19 H 0.114 0.886 20 C -0.148 4.148 21 C 0.038 3.962 22 O -0.396 6.396 23 C 0.025 3.975 24 H 0.030 0.970 25 H 0.062 0.938 26 H 0.038 0.962 27 H 0.259 0.741 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.419 0.581 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.118 0.882 36 H 0.060 0.940 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.065 -8.036 -8.131 13.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.147 3.853 3 H 0.046 0.954 4 C -0.626 4.626 5 H 0.085 0.915 6 C -0.222 4.222 7 N -0.577 5.577 8 Si 0.933 3.067 9 H -0.191 1.191 10 H -0.212 1.212 11 H -0.217 1.217 12 N -0.832 5.832 13 C -0.050 4.050 14 S 2.805 3.195 15 O -0.986 6.986 16 O -1.004 7.004 17 N -0.871 5.871 18 C 0.006 3.994 19 H 0.132 0.868 20 C -0.187 4.187 21 C -0.039 4.039 22 O -0.315 6.315 23 C -0.053 4.053 24 H 0.049 0.951 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.254 0.746 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.079 -7.670 -7.257 13.295 hybrid contribution -0.451 0.600 -1.026 1.271 sum 7.628 -7.069 -8.282 13.295 Atomic orbital electron populations 1.22022 0.97771 1.00927 0.98908 1.18621 0.91742 0.92072 0.82839 0.95433 1.22366 1.46743 0.98757 0.94752 0.91459 1.26913 0.94786 0.95860 1.04670 1.70850 1.44162 1.09476 1.33222 0.83021 0.76277 0.74889 0.72529 1.19117 1.21223 1.21651 1.57592 1.65189 1.22375 1.38088 1.21472 1.00687 0.80457 1.02363 1.01263 0.73102 0.72028 0.73113 1.93533 1.86468 1.76242 1.42384 1.93543 1.84576 1.34984 1.87330 1.55858 1.31150 1.15541 1.84563 1.22293 0.97328 0.82432 0.97308 0.86849 1.23430 0.91361 1.05622 0.98275 1.23787 0.95864 0.93433 0.90775 1.88846 1.16973 1.56394 1.69282 1.23894 0.84728 1.01376 0.95319 0.95102 0.91901 0.94291 0.93026 0.92628 0.90729 0.90281 0.74583 0.87078 0.87974 0.92690 0.86432 0.92207 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.92 9.25 71.98 0.67 -5.25 16 2 C 0.25 11.67 2.35 44.24 0.10 11.78 16 3 H 0.03 1.48 5.44 -2.39 -0.01 1.47 16 4 C -0.59 -28.62 7.84 25.60 0.20 -28.42 16 5 H 0.07 3.14 6.66 -2.91 -0.02 3.12 16 6 C -0.02 -1.19 5.45 84.65 0.46 -0.73 16 7 N -0.94 -54.34 13.63 21.45 0.29 -54.04 16 8 Si 1.11 47.71 29.91 68.60 2.05 49.76 16 9 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 10 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.99 -38.04 3.12 -520.43 -1.62 -39.66 16 13 C 0.10 2.98 9.22 127.77 1.18 4.16 16 14 S 2.80 104.28 6.08 -56.49 -0.34 103.94 16 15 O -1.00 -37.96 16.59 -128.00 -2.12 -40.09 16 16 O -1.02 -46.27 16.70 -128.00 -2.14 -48.41 16 17 N -1.11 -33.29 5.47 -165.27 -0.90 -34.19 16 18 C 0.11 2.88 3.73 45.98 0.17 3.05 16 19 H 0.11 2.63 7.23 -2.39 -0.02 2.61 16 20 C -0.15 -2.75 6.80 31.89 0.22 -2.54 16 21 C 0.04 0.80 7.72 72.66 0.56 1.36 16 22 O -0.40 -11.53 11.52 -148.98 -1.72 -13.25 16 23 C 0.03 0.75 7.51 72.35 0.54 1.29 16 24 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 2.44 7.51 -2.39 -0.02 2.42 16 26 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.26 15.35 6.66 -92.71 -0.62 14.73 16 28 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.07 1.93 7.44 -2.39 -0.02 1.91 16 30 H 0.08 2.49 6.63 -2.39 -0.02 2.47 16 31 H 0.42 11.66 8.84 -96.76 -0.85 10.80 16 32 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.10 1.64 8.06 -2.38 -0.02 1.62 16 34 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.06 2.19 7.63 -2.39 -0.02 2.17 16 37 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -67.13 313.28 -2.03 -69.16 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.37 Total: 22.08 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 4.10 Total: -15.30 kcal Atomic # 7 Polarization: -125.66 SS G_CDS: -2.24 Total: -127.90 kcal Atomic # 8 Polarization: -95.77 SS G_CDS: -5.98 Total: -101.74 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.05 Total: 49.76 kcal Atomic # 16 Polarization: 104.28 SS G_CDS: -0.34 Total: 103.94 kcal Total: -67.13 -2.03 -69.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337759431.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.228 kcal (2) G-P(sol) polarization free energy of solvation -67.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds