Wall clock time and date at job start Tue Mar 31 2020 01:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47275 * 2 1 4 4 C 1.46493 * 120.00444 * 275.27738 * 3 2 1 5 5 C 1.50701 * 109.47177 * 274.72646 * 4 3 2 6 6 H 1.07996 * 119.99972 * 359.97438 * 5 4 3 7 7 C 1.37887 * 119.99644 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00243 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47396 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47335 * 120.00090 * 9 7 5 12 12 H 1.48506 * 109.47160 * 239.99920 * 9 7 5 13 13 S 1.65608 * 119.99583 * 95.00419 * 3 2 1 14 14 O 1.42100 * 106.40059 * 203.54152 * 13 3 2 15 15 O 1.42096 * 106.40050 * 336.46185 * 13 3 2 16 16 N 1.65599 * 107.21718 * 90.00246 * 13 3 2 17 17 C 1.47068 * 136.05416 * 269.62310 * 16 13 3 18 18 C 1.53763 * 87.88742 * 152.96729 * 17 16 13 19 19 C 1.52994 * 114.08650 * 139.78192 * 18 17 16 20 20 O 1.42901 * 114.39366 * 272.68014 * 18 17 16 21 21 C 1.47068 * 136.05985 * 89.99611 * 16 13 3 22 22 H 1.09005 * 109.47015 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46714 * 299.99336 * 1 2 3 24 24 H 1.08990 * 109.47196 * 59.99425 * 1 2 3 25 25 H 1.09005 * 109.47025 * 239.99991 * 2 1 3 26 26 H 1.09001 * 109.47382 * 120.01018 * 2 1 3 27 27 H 1.09004 * 109.46868 * 34.72321 * 4 3 2 28 28 H 1.09004 * 109.47439 * 154.72444 * 4 3 2 29 29 H 0.97001 * 119.99910 * 180.02562 * 8 7 5 30 30 H 1.08999 * 113.47394 * 267.69687 * 17 16 13 31 31 H 1.09007 * 113.46601 * 38.14228 * 17 16 13 32 32 H 1.09000 * 109.47389 * 326.55870 * 19 18 17 33 33 H 1.08996 * 109.47291 * 86.56701 * 19 18 17 34 34 H 1.09007 * 109.47159 * 206.56291 * 19 18 17 35 35 H 0.96699 * 113.99912 * 273.58539 * 20 18 17 36 36 H 1.09002 * 113.46645 * 321.86993 * 21 16 13 37 37 H 1.09008 * 113.46285 * 92.24401 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1526 2.1107 -1.2632 5 6 3.4890 1.7971 -1.8850 6 1 4.1705 1.1221 -1.3885 7 6 3.8418 2.3718 -3.0876 8 7 3.0117 3.1934 -3.6924 9 14 5.4980 1.9825 -3.8586 10 1 6.2404 1.0375 -2.9862 11 1 5.2901 1.3656 -5.1933 12 1 6.2808 3.2355 -4.0091 13 16 2.4123 2.1200 1.4288 14 8 2.3058 3.5184 1.2000 15 8 1.6870 1.4412 2.4448 16 7 4.0146 1.8135 1.7137 17 6 4.7861 0.7728 2.4098 18 6 5.9540 1.0826 1.4589 19 6 7.3269 1.0784 2.1340 20 8 5.9233 0.3543 0.2297 21 6 5.2918 2.4655 1.3876 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8898 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5140 0.8899 27 1 1.3558 1.8093 -1.9433 28 1 2.0825 3.1818 -1.0735 29 1 3.2597 3.5974 -4.5387 30 1 4.9989 1.0137 3.4513 31 1 4.3757 -0.2292 2.2837 32 1 7.2294 1.4393 3.1579 33 1 7.7244 0.0635 2.1427 34 1 8.0051 1.7295 1.5823 35 1 6.3412 -0.5164 0.2779 36 1 5.3123 2.9058 0.3906 37 1 5.6373 3.1536 2.1592 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338424225.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:45 Heat of formation + Delta-G solvation = -84.377626 kcal Electronic energy + Delta-G solvation = -21715.420871 eV Core-core repulsion = 18428.328587 eV Total energy + Delta-G solvation = -3287.092284 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.69991 -36.58122 -35.92309 -35.15913 -34.96922 -32.57578 -30.30194 -29.85333 -26.51182 -25.84232 -25.47342 -23.01448 -21.59935 -20.16629 -18.27618 -17.07570 -16.86088 -16.35786 -16.14904 -15.68534 -14.97051 -14.55876 -14.30840 -14.06296 -13.72824 -13.27798 -12.89863 -12.83279 -12.41491 -12.31192 -11.99432 -11.90889 -11.69056 -11.61499 -11.45533 -11.33849 -11.26129 -10.98500 -10.80822 -10.42783 -10.41203 -10.20043 -9.95006 -9.64822 -9.52560 -8.72499 -8.37025 -7.94432 -5.97629 -4.01628 1.26352 3.33365 3.41206 3.47358 3.53482 4.12151 4.16934 4.41611 4.50658 4.80975 4.95537 5.01184 5.36509 5.46938 5.55213 5.56439 5.62171 5.68879 5.80561 5.86864 5.91919 6.04829 6.10187 6.14981 6.34736 6.37492 6.70416 6.75370 6.86099 7.43867 7.57611 7.75666 7.88611 8.03605 8.31353 9.10570 9.64434 11.10921 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013460 B = 0.010588 C = 0.007170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.729682 B = 2643.866450 C = 3904.045467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.134 3.866 3 N -0.984 5.984 4 C 0.244 3.756 5 C -0.531 4.531 6 H 0.080 0.920 7 C 0.060 3.940 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.265 1.265 11 H -0.289 1.289 12 H -0.287 1.287 13 S 2.808 3.192 14 O -0.976 6.976 15 O -0.998 6.998 16 N -1.038 6.038 17 C 0.103 3.897 18 C 0.090 3.910 19 C -0.167 4.167 20 O -0.512 6.512 21 C 0.139 3.861 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.260 0.740 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.371 0.629 36 H 0.096 0.904 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.270 -7.240 10.917 14.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.007 3.993 3 N -0.826 5.826 4 C 0.122 3.878 5 C -0.571 4.571 6 H 0.098 0.902 7 C -0.142 4.142 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.189 1.189 11 H -0.215 1.215 12 H -0.214 1.214 13 S 2.819 3.181 14 O -0.961 6.961 15 O -0.982 6.982 16 N -0.875 5.875 17 C -0.024 4.024 18 C 0.046 3.954 19 C -0.225 4.225 20 O -0.315 6.315 21 C 0.013 3.987 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.217 0.783 36 H 0.114 0.886 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.077 -6.014 11.052 13.568 hybrid contribution 1.322 -0.840 -0.674 1.706 sum 6.400 -6.855 10.378 13.987 Atomic orbital electron populations 1.22217 0.97048 1.01315 1.02342 1.20922 0.93396 0.83045 1.01936 1.57705 1.77813 1.22800 1.24253 1.19217 0.97668 0.91967 0.78957 1.21850 1.01956 1.27692 1.05587 0.90154 1.24971 0.97147 0.95007 0.97060 1.69971 1.35945 1.30608 1.17145 0.86515 0.84330 0.78237 0.78883 1.18868 1.21507 1.21357 1.01015 0.71231 0.73138 0.72719 1.93566 1.85386 1.30969 1.86134 1.93523 1.69910 1.76740 1.58059 1.60378 1.21318 1.37504 1.68325 1.23180 0.90624 0.92407 0.96171 1.22612 0.92435 0.94689 0.85660 1.22244 0.96466 1.02702 1.01103 1.86814 1.81826 1.32677 1.30228 1.22492 0.79852 0.93600 1.02725 0.92387 0.92752 0.92055 0.90267 0.92276 0.94550 0.93497 0.92993 0.89928 0.90787 0.91182 0.91983 0.91272 0.78252 0.88561 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 10.23 37.16 0.38 -2.45 16 2 C 0.13 2.46 6.06 -4.04 -0.02 2.44 16 3 N -0.98 -21.45 2.82 -115.67 -0.33 -21.78 16 4 C 0.24 6.31 5.43 -5.20 -0.03 6.28 16 5 C -0.53 -14.33 9.38 -34.44 -0.32 -14.66 16 6 H 0.08 2.12 6.90 -52.49 -0.36 1.76 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 9 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 S 2.81 59.85 6.65 -107.50 -0.71 59.14 16 14 O -0.98 -24.13 16.69 -57.17 -0.95 -25.08 16 15 O -1.00 -21.52 17.11 -57.17 -0.98 -22.50 16 16 N -1.04 -18.45 4.29 -124.97 -0.54 -18.99 16 17 C 0.10 1.37 8.17 -8.36 -0.07 1.30 16 18 C 0.09 1.16 2.04 -89.97 -0.18 0.98 16 19 C -0.17 -1.48 9.54 37.15 0.35 -1.12 16 20 O -0.51 -7.76 12.68 -35.23 -0.45 -8.21 16 21 C 0.14 2.22 8.15 -8.50 -0.07 2.15 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.06 1.06 8.13 -51.93 -0.42 0.64 16 25 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 26 H 0.06 0.99 7.61 -51.93 -0.40 0.59 16 27 H 0.04 0.98 8.09 -51.93 -0.42 0.56 16 28 H 0.05 1.34 6.91 -51.93 -0.36 0.99 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.08 0.88 7.93 -51.93 -0.41 0.47 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.37 3.78 9.04 45.56 0.41 4.19 16 36 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 37 H 0.09 1.11 8.11 -51.92 -0.42 0.69 16 LS Contribution 324.72 15.07 4.89 4.89 Total: -1.00 -34.89 324.72 -8.29 -43.18 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.88 Total: 2.21 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -0.06 Total: -3.52 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: -0.13 Total: -66.49 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: -2.38 Total: -55.79 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 59.85 SS G_CDS: -0.71 Total: 59.14 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.89 -8.29 -43.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338424225.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.196 kcal (2) G-P(sol) polarization free energy of solvation -34.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds