Wall clock time and date at job start Tue Mar 31 2020 01:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42903 * 109.46842 * 2 1 4 4 C 1.42906 * 113.99839 * 180.02562 * 3 2 1 5 5 C 1.53494 * 114.20504 * 149.99752 * 4 3 2 6 6 N 1.47070 * 87.98535 * 139.65414 * 5 4 3 7 7 S 1.65593 * 136.05980 * 152.84132 * 6 5 4 8 8 O 1.42105 * 106.40208 * 336.46402 * 7 6 5 9 9 O 1.42100 * 106.40690 * 203.54489 * 7 6 5 10 10 N 1.65605 * 107.21900 * 90.00221 * 7 6 5 11 11 C 1.46499 * 119.99780 * 270.00315 * 10 7 6 12 12 C 1.46496 * 119.99928 * 89.99814 * 10 7 6 13 13 C 1.50706 * 109.47106 * 95.00107 * 12 10 7 14 14 H 1.07999 * 119.99515 * 0.02562 * 13 12 10 15 15 C 1.37870 * 120.00176 * 180.02562 * 13 12 10 16 16 N 1.31520 * 119.99883 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00043 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47288 * 59.99994 * 17 15 13 19 19 H 1.48503 * 109.47086 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46819 * 299.99648 * 17 15 13 21 21 C 1.47071 * 87.88518 * 333.10141 * 6 5 4 22 22 H 1.08998 * 109.47661 * 60.00209 * 1 2 3 23 23 H 1.09006 * 109.46920 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47256 * 299.99582 * 1 2 3 25 25 H 1.08998 * 109.47290 * 239.99871 * 2 1 3 26 26 H 1.08998 * 109.47661 * 119.99791 * 2 1 3 27 27 H 1.09004 * 113.28009 * 16.93411 * 4 3 2 28 28 H 1.08998 * 113.46777 * 24.87397 * 5 4 3 29 29 H 1.09003 * 113.47084 * 254.43249 * 5 4 3 30 30 H 1.08998 * 109.47053 * 269.99667 * 11 10 7 31 31 H 1.08998 * 109.47605 * 30.00144 * 11 10 7 32 32 H 1.09001 * 109.46791 * 150.00195 * 11 10 7 33 33 H 1.09001 * 109.47001 * 335.00398 * 12 10 7 34 34 H 1.09000 * 109.47574 * 215.00614 * 12 10 7 35 35 H 0.97004 * 119.99507 * 180.02562 * 16 15 13 36 36 H 1.08998 * 113.47004 * 141.67029 * 21 6 5 37 37 H 1.08994 * 113.46551 * 272.12354 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9621 2.7186 -0.7007 6 7 4.9570 2.8346 0.3762 7 16 6.4760 3.4752 0.5323 8 8 7.0318 3.5133 -0.7750 9 8 7.0894 2.7938 1.6179 10 7 6.2969 5.0506 1.0102 11 6 6.1884 6.1126 0.0069 12 6 6.2469 5.3823 2.4363 13 6 7.6235 5.7718 2.9101 14 1 8.4525 5.7727 2.2179 15 6 7.8244 6.1270 4.2270 16 7 6.8149 6.1255 5.0699 17 14 9.5306 6.6106 4.8140 18 1 10.0013 7.7923 4.0479 19 1 9.4799 6.9466 6.2597 20 1 10.4668 5.4776 4.6012 21 6 4.0118 2.1253 1.2517 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.9358 0.5394 -0.2926 28 1 3.2457 3.5398 -0.7200 29 1 4.4016 2.5189 -1.6780 30 1 7.1829 6.4893 -0.2324 31 1 5.7239 5.7143 -0.8951 32 1 5.5778 6.9245 0.4019 33 1 5.9008 4.5152 2.9990 34 1 5.5601 6.2142 2.5921 35 1 6.9562 6.3758 5.9964 36 1 4.4934 1.4220 1.9311 37 1 3.3087 2.7869 1.7576 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339137420.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:33 Heat of formation + Delta-G solvation = -79.066076 kcal Electronic energy + Delta-G solvation = -20446.148126 eV Core-core repulsion = 17159.286168 eV Total energy + Delta-G solvation = -3286.861958 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.73868 -36.87382 -36.60495 -35.47830 -35.17721 -32.43031 -31.36337 -27.78665 -27.50405 -26.00997 -25.03915 -23.03647 -22.28615 -21.25031 -18.38001 -17.51947 -17.24127 -16.55719 -16.34050 -16.06123 -15.46258 -14.76126 -14.55510 -14.28914 -13.94502 -13.36846 -13.22223 -12.82612 -12.61426 -12.54221 -12.30183 -12.13792 -12.08810 -11.65143 -11.48763 -11.37794 -11.20321 -11.20138 -11.08717 -11.03270 -10.71310 -10.51043 -10.02059 -9.79093 -9.57145 -9.01121 -8.43333 -8.06353 -6.05776 -4.09951 1.07944 3.32758 3.34776 3.37663 3.42633 3.55737 4.12209 4.27122 4.45350 4.70120 4.75544 4.80866 4.86302 5.07916 5.15889 5.28063 5.37067 5.51179 5.53900 5.59942 5.65426 5.69408 5.80000 5.92524 6.00578 6.07507 6.28745 6.49973 6.61587 7.05310 7.20887 7.38759 7.59768 7.91329 8.20590 8.91902 9.55125 11.02830 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027064 B = 0.004578 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.337672 B = 6114.562874 C = 6578.545429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.371 6.371 4 C 0.050 3.950 5 C 0.125 3.875 6 N -1.047 6.047 7 S 2.803 3.197 8 O -0.989 6.989 9 O -0.954 6.954 10 N -0.997 5.997 11 C 0.109 3.891 12 C 0.258 3.742 13 C -0.530 4.530 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.896 5.896 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.111 3.889 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.082 0.918 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.930 -9.355 -10.765 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.289 6.289 4 C -0.010 4.010 5 C -0.001 4.001 6 N -0.887 5.887 7 S 2.813 3.187 8 O -0.974 6.974 9 O -0.938 6.938 10 N -0.840 5.840 11 C -0.038 4.038 12 C 0.136 3.864 13 C -0.569 4.569 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.535 5.535 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.015 4.015 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.119 0.881 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.069 -9.503 -10.694 18.088 hybrid contribution 0.772 0.437 0.591 1.066 sum -10.297 -9.066 -10.103 17.038 Atomic orbital electron populations 1.21749 0.93764 1.02179 1.03219 1.22550 0.95590 0.83805 1.00270 1.87941 1.19979 1.26517 1.94457 1.24061 0.81168 0.98353 0.97440 1.22642 0.88971 0.96764 0.91698 1.60849 1.32226 1.73373 1.22211 1.01415 0.71743 0.72875 0.72712 1.93534 1.75277 1.87503 1.41042 1.93627 1.72066 1.73333 1.54819 1.57763 1.88204 1.22396 1.15595 1.21203 1.01467 0.91402 0.89705 1.19068 0.97740 0.97129 0.72510 1.21452 0.94685 1.45789 0.95008 0.92236 1.24933 0.97305 0.95341 0.96424 1.69915 1.30684 1.48343 1.04579 0.86559 0.84350 0.79050 0.77511 1.20160 1.21130 1.19974 1.22905 0.89981 0.94527 0.94126 0.91874 0.91208 0.91717 0.93253 0.93060 0.88091 0.89329 0.89958 0.93066 0.93075 0.91469 0.94560 0.94732 0.92624 0.89965 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.15 0.38 -0.67 16 2 C 0.05 0.45 6.50 37.15 0.24 0.69 16 3 O -0.37 -4.05 10.40 -35.23 -0.37 -4.42 16 4 C 0.05 0.56 4.65 -26.35 -0.12 0.44 16 5 C 0.13 1.55 8.58 -8.50 -0.07 1.48 16 6 N -1.05 -16.80 4.29 -125.33 -0.54 -17.34 16 7 S 2.80 58.14 6.60 -107.50 -0.71 57.43 16 8 O -0.99 -21.29 17.21 -57.17 -0.98 -22.27 16 9 O -0.95 -23.52 17.11 -57.17 -0.98 -24.50 16 10 N -1.00 -21.54 3.23 -123.05 -0.40 -21.93 16 11 C 0.11 1.95 10.33 59.85 0.62 2.56 16 12 C 0.26 6.62 5.12 -5.19 -0.03 6.59 16 13 C -0.53 -15.22 9.38 -34.44 -0.32 -15.54 16 14 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 16 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 17 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.11 1.52 8.56 -8.63 -0.07 1.45 16 22 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.10 0.97 7.88 -51.93 -0.41 0.56 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 32 H 0.07 1.11 7.94 -51.93 -0.41 0.70 16 33 H 0.04 0.99 7.61 -51.93 -0.40 0.59 16 34 H 0.03 0.90 7.96 -51.93 -0.41 0.48 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 328.57 15.07 4.95 4.95 Total: -1.00 -34.48 328.57 -8.59 -43.07 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -5.81 Total: -5.08 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 0.53 Total: -1.31 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -0.20 Total: -64.97 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -2.33 Total: -51.19 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 58.14 SS G_CDS: -0.71 Total: 57.43 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.48 -8.59 -43.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339137420.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.000 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds