Wall clock time and date at job start Mon Mar 30 2020 23:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47564 * 2 1 4 4 C 1.50705 * 109.47114 * 240.00040 * 2 1 3 5 5 O 1.21294 * 120.00120 * 263.45363 * 4 2 1 6 6 N 1.34774 * 120.00032 * 83.44737 * 4 2 1 7 7 C 1.37100 * 120.00487 * 180.02562 * 6 4 2 8 8 H 1.08000 * 119.99076 * 0.02562 * 7 6 4 9 9 C 1.38948 * 120.00264 * 180.02562 * 7 6 4 10 10 N 1.31411 * 119.99905 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99865 * 180.02562 * 9 7 6 12 12 H 1.48490 * 109.47361 * 89.99578 * 11 9 7 13 13 H 1.48498 * 109.46955 * 209.99859 * 11 9 7 14 14 H 1.48500 * 109.46888 * 329.99136 * 11 9 7 15 15 C 1.50695 * 109.47045 * 120.00430 * 2 1 3 16 16 C 1.38254 * 120.00238 * 7.00035 * 15 2 1 17 17 C 1.38212 * 120.00341 * 179.72930 * 16 15 2 18 18 C 1.38261 * 119.99911 * 0.27446 * 17 16 15 19 19 C 1.38218 * 119.99839 * 359.97438 * 18 17 16 20 20 C 1.38222 * 119.99820 * 187.19679 * 15 2 1 21 21 N 1.48008 * 120.00130 * 0.03995 * 20 15 2 22 22 O 1.21799 * 120.00193 * 152.13188 * 21 20 15 23 23 O 1.21803 * 120.00344 * 332.13124 * 21 20 15 24 24 H 1.09003 * 109.47105 * 297.30286 * 1 2 3 25 25 H 1.09003 * 109.47218 * 57.30130 * 1 2 3 26 26 H 1.08997 * 109.47398 * 177.30171 * 1 2 3 27 27 H 1.09002 * 109.47871 * 171.78904 * 3 2 1 28 28 H 1.08999 * 109.47330 * 291.79372 * 3 2 1 29 29 H 1.09011 * 109.47237 * 51.78690 * 3 2 1 30 30 H 0.97008 * 119.99742 * 0.02562 * 6 4 2 31 31 H 0.97001 * 119.99816 * 180.02562 * 10 9 7 32 32 H 1.07999 * 119.99778 * 0.02562 * 16 15 2 33 33 H 1.07998 * 120.00678 * 180.25521 * 17 16 15 34 34 H 1.07994 * 120.00172 * 179.97438 * 18 17 16 35 35 H 1.07993 * 119.99949 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3474 -1.8801 -1.1694 6 7 2.1314 -0.0461 -2.3989 7 6 2.5878 -0.6924 -3.5186 8 1 2.8677 -1.7341 -3.4642 9 6 2.6904 -0.0073 -4.7230 10 7 2.3494 1.2601 -4.7892 11 14 3.3118 -0.8883 -6.2486 12 1 2.1647 -1.4904 -6.9742 13 1 4.0028 0.0831 -7.1341 14 1 4.2619 -1.9577 -5.8502 15 6 2.0323 -0.7105 1.2304 16 6 1.1423 -1.3609 2.0649 17 6 1.6036 -2.0172 3.1903 18 6 2.9545 -2.0186 3.4847 19 6 3.8437 -1.3641 2.6532 20 6 3.3823 -0.7085 1.5268 21 7 4.3345 -0.0078 0.6363 22 8 5.3733 0.4403 1.0874 23 8 4.0793 0.1207 -0.5478 24 1 -0.3633 0.4714 0.9132 25 1 -0.3634 0.5552 -0.8648 26 1 -0.3634 -1.0265 -0.0484 27 1 3.1201 1.4460 0.1468 28 1 1.8015 1.9122 -0.9542 29 1 1.5618 1.9970 0.8075 30 1 1.8796 0.8895 -2.4478 31 1 2.4207 1.7382 -5.6301 32 1 0.0871 -1.3601 1.8347 33 1 0.9089 -2.5288 3.8400 34 1 3.3149 -2.5311 4.3643 35 1 4.8988 -1.3648 2.8834 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339604396.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:37 Heat of formation + Delta-G solvation = 10.590251 kcal Electronic energy + Delta-G solvation = -22724.290537 eV Core-core repulsion = 19305.872417 eV Total energy + Delta-G solvation = -3418.418119 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.07236 -39.79694 -38.18750 -36.09072 -34.72798 -33.81448 -31.88426 -31.20064 -29.92239 -27.28584 -26.11660 -25.00951 -23.72734 -22.02808 -21.53706 -19.08310 -18.51596 -18.12633 -17.85496 -17.29525 -16.16503 -15.68243 -15.23785 -14.77035 -14.49194 -14.29365 -13.83136 -13.39580 -13.19089 -12.84270 -12.53274 -12.07883 -11.92835 -11.77144 -11.62488 -11.40046 -11.12410 -11.05126 -11.00870 -10.81722 -10.46079 -10.28728 -10.05336 -9.99172 -9.44235 -9.37136 -9.11199 -8.22210 -7.81505 -6.28419 -3.66430 0.24625 1.04598 1.58943 1.85433 3.26467 3.34541 3.37151 3.42417 3.97229 4.28257 4.38868 4.50535 4.68404 4.93202 4.96290 5.02264 5.13680 5.23942 5.32942 5.50484 5.64042 5.75363 5.81817 5.85128 5.93909 6.00841 6.02895 6.13561 6.29843 6.40314 6.44600 6.65113 6.86788 7.68343 8.11803 8.18702 8.73784 9.30677 9.68680 10.18490 10.89838 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024573 B = 0.006176 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.196299 B = 4532.675399 C = 4853.455070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 C -0.161 4.161 4 C 0.480 3.520 5 O -0.601 6.601 6 N -0.545 5.545 7 C -0.287 4.287 8 H 0.101 0.899 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.927 3.073 12 H -0.280 1.280 13 H -0.284 1.284 14 H -0.271 1.271 15 C 0.028 3.972 16 C -0.118 4.118 17 C -0.074 4.074 18 C -0.129 4.129 19 C -0.061 4.061 20 C -0.025 4.025 21 N 0.020 4.980 22 O -0.190 6.190 23 O -0.091 6.091 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.392 0.608 31 H 0.270 0.730 32 H 0.148 0.852 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.797 -1.323 15.794 16.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.057 4.057 3 C -0.218 4.218 4 C 0.266 3.734 5 O -0.488 6.488 6 N -0.180 5.180 7 C -0.417 4.417 8 H 0.118 0.882 9 C -0.179 4.179 10 N -0.544 5.544 11 Si 0.755 3.245 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.195 1.195 15 C 0.026 3.974 16 C -0.136 4.136 17 C -0.092 4.092 18 C -0.148 4.148 19 C -0.080 4.080 20 C -0.107 4.107 21 N 0.537 4.463 22 O -0.396 6.396 23 O -0.314 6.314 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.226 0.774 31 H 0.080 0.920 32 H 0.165 0.835 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.959 -2.277 16.132 16.766 hybrid contribution 0.510 0.341 -1.063 1.227 sum -3.449 -1.936 15.069 15.580 Atomic orbital electron populations 1.21900 0.92234 1.02823 1.02591 1.19915 0.97480 0.95830 0.92490 1.22414 1.02624 0.93398 1.03370 1.18766 0.84128 0.87061 0.83472 1.90502 1.56301 1.16989 1.85002 1.41661 1.56486 1.12710 1.07166 1.19649 1.39154 0.97049 0.85867 0.88156 1.25198 0.97825 0.95651 0.99202 1.69609 1.48710 1.08583 1.27473 0.85897 0.78827 0.78866 0.80912 1.20644 1.20979 1.19528 1.19469 0.90126 0.93308 0.94497 1.21221 1.00623 0.97500 0.94263 1.21494 0.95846 0.95772 0.96099 1.21071 0.92979 1.00562 1.00187 1.20916 1.01790 0.94147 0.91127 1.20868 0.89517 1.05420 0.94901 1.43658 1.01155 0.99514 1.01945 1.94467 1.14462 1.50965 1.79705 1.94678 1.79736 1.58994 0.97957 0.92054 0.90915 0.91563 0.91528 0.90021 0.92760 0.77357 0.92028 0.83471 0.84397 0.84122 0.83754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 7.12 37.16 0.26 -1.78 16 2 C -0.05 -0.99 0.71 -156.82 -0.11 -1.10 16 3 C -0.16 -2.83 7.64 37.15 0.28 -2.54 16 4 C 0.48 11.62 3.58 -10.98 -0.04 11.58 16 5 O -0.60 -16.69 15.57 -10.73 -0.17 -16.86 16 6 N -0.55 -14.18 4.65 -10.96 -0.05 -14.23 16 7 C -0.29 -8.22 9.68 -14.93 -0.14 -8.36 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 10 N -0.90 -25.05 13.05 55.50 0.72 -24.32 16 11 Si 0.93 21.71 29.55 -169.99 -5.02 16.69 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 C 0.03 0.47 4.15 -104.62 -0.43 0.04 16 16 C -0.12 -1.53 8.98 -39.58 -0.36 -1.89 16 17 C -0.07 -0.76 10.05 -39.58 -0.40 -1.16 16 18 C -0.13 -1.37 10.05 -39.58 -0.40 -1.76 16 19 C -0.06 -0.84 9.61 -39.58 -0.38 -1.22 16 20 C -0.02 -0.44 6.24 -79.95 -0.50 -0.94 16 21 N 0.02 0.41 3.11 33.96 0.11 0.52 16 22 O -0.19 -3.82 18.74 -29.46 -0.55 -4.37 16 23 O -0.09 -2.18 11.64 -34.95 -0.41 -2.58 16 24 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.07 0.97 7.36 -51.93 -0.38 0.59 16 27 H 0.07 1.30 4.08 -52.18 -0.21 1.09 16 28 H 0.08 1.47 6.34 -51.93 -0.33 1.15 16 29 H 0.05 0.78 8.13 -51.92 -0.42 0.36 16 30 H 0.39 9.85 5.97 -40.82 -0.24 9.60 16 31 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.15 1.58 5.93 -52.49 -0.31 1.27 16 33 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.14 1.77 7.86 -52.49 -0.41 1.36 16 LS Contribution 294.03 15.07 4.43 4.43 Total: -1.00 -33.93 294.03 -6.74 -40.67 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -3.49 Total: 8.68 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -2.31 Total: -8.62 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.78 Total: -38.04 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -1.13 Total: -23.81 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.93 -6.74 -40.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339604396.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.256 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds