Wall clock time and date at job start Mon Mar 30 2020 23:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47564 * 2 1 4 4 C 1.50705 * 109.47114 * 240.00040 * 2 1 3 5 5 O 1.21294 * 120.00120 * 263.45363 * 4 2 1 6 6 N 1.34774 * 120.00032 * 83.44737 * 4 2 1 7 7 C 1.37100 * 120.00487 * 180.02562 * 6 4 2 8 8 H 1.08000 * 119.99076 * 0.02562 * 7 6 4 9 9 C 1.38948 * 120.00264 * 180.02562 * 7 6 4 10 10 N 1.31411 * 119.99905 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99865 * 180.02562 * 9 7 6 12 12 H 1.48490 * 109.47361 * 89.99578 * 11 9 7 13 13 H 1.48498 * 109.46955 * 209.99859 * 11 9 7 14 14 H 1.48500 * 109.46888 * 329.99136 * 11 9 7 15 15 C 1.50695 * 109.47045 * 120.00430 * 2 1 3 16 16 C 1.38254 * 120.00238 * 7.00035 * 15 2 1 17 17 C 1.38212 * 120.00341 * 179.72930 * 16 15 2 18 18 C 1.38261 * 119.99911 * 0.27446 * 17 16 15 19 19 C 1.38218 * 119.99839 * 359.97438 * 18 17 16 20 20 C 1.38222 * 119.99820 * 187.19679 * 15 2 1 21 21 N 1.48008 * 120.00130 * 0.03995 * 20 15 2 22 22 O 1.21799 * 120.00193 * 152.13188 * 21 20 15 23 23 O 1.21803 * 120.00344 * 332.13124 * 21 20 15 24 24 H 1.09003 * 109.47105 * 297.30286 * 1 2 3 25 25 H 1.09003 * 109.47218 * 57.30130 * 1 2 3 26 26 H 1.08997 * 109.47398 * 177.30171 * 1 2 3 27 27 H 1.09002 * 109.47871 * 171.78904 * 3 2 1 28 28 H 1.08999 * 109.47330 * 291.79372 * 3 2 1 29 29 H 1.09011 * 109.47237 * 51.78690 * 3 2 1 30 30 H 0.97008 * 119.99742 * 0.02562 * 6 4 2 31 31 H 0.97001 * 119.99816 * 180.02562 * 10 9 7 32 32 H 1.07999 * 119.99778 * 0.02562 * 16 15 2 33 33 H 1.07998 * 120.00678 * 180.25521 * 17 16 15 34 34 H 1.07994 * 120.00172 * 179.97438 * 18 17 16 35 35 H 1.07993 * 119.99949 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3474 -1.8801 -1.1694 6 7 2.1314 -0.0461 -2.3989 7 6 2.5878 -0.6924 -3.5186 8 1 2.8677 -1.7341 -3.4642 9 6 2.6904 -0.0073 -4.7230 10 7 2.3494 1.2601 -4.7892 11 14 3.3118 -0.8883 -6.2486 12 1 2.1647 -1.4904 -6.9742 13 1 4.0028 0.0831 -7.1341 14 1 4.2619 -1.9577 -5.8502 15 6 2.0323 -0.7105 1.2304 16 6 1.1423 -1.3609 2.0649 17 6 1.6036 -2.0172 3.1903 18 6 2.9545 -2.0186 3.4847 19 6 3.8437 -1.3641 2.6532 20 6 3.3823 -0.7085 1.5268 21 7 4.3345 -0.0078 0.6363 22 8 5.3733 0.4403 1.0874 23 8 4.0793 0.1207 -0.5478 24 1 -0.3633 0.4714 0.9132 25 1 -0.3634 0.5552 -0.8648 26 1 -0.3634 -1.0265 -0.0484 27 1 3.1201 1.4460 0.1468 28 1 1.8015 1.9122 -0.9542 29 1 1.5618 1.9970 0.8075 30 1 1.8796 0.8895 -2.4478 31 1 2.4207 1.7382 -5.6301 32 1 0.0871 -1.3601 1.8347 33 1 0.9089 -2.5288 3.8400 34 1 3.3149 -2.5311 4.3643 35 1 4.8988 -1.3648 2.8834 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339604396.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:36 Heat of formation + Delta-G solvation = -11.574966 kcal Electronic energy + Delta-G solvation = -22725.251693 eV Core-core repulsion = 19305.872417 eV Total energy + Delta-G solvation = -3419.379275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.51737 -41.18992 -39.69373 -37.68934 -36.19176 -35.86113 -33.16335 -32.98297 -31.14352 -28.54407 -27.47515 -27.05021 -25.00052 -23.26885 -22.99245 -20.53649 -20.17348 -19.79851 -19.53268 -18.75032 -17.66087 -17.12956 -16.56707 -16.37635 -15.89410 -15.52044 -15.48625 -14.89958 -14.88033 -14.06965 -13.70999 -13.50160 -13.37442 -13.18380 -13.08717 -12.90508 -12.82796 -12.61890 -12.47816 -12.32769 -12.16740 -12.09624 -11.88298 -11.51058 -11.42305 -10.46201 -10.33576 -9.98420 -9.90446 -8.39435 -5.85148 -1.10234 0.04821 0.27942 0.52917 1.38501 1.40416 1.53755 2.16229 2.30548 2.40580 3.17349 3.23167 3.34009 3.46294 3.79218 3.86862 3.99766 4.03910 4.10350 4.25942 4.37502 4.52156 4.56638 4.71957 4.76907 4.83466 4.90322 5.03896 5.10762 5.20220 5.23195 5.28922 5.46402 5.64750 6.06691 6.50689 6.67222 7.20209 7.66724 8.20717 8.79040 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024573 B = 0.006176 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.196299 B = 4532.675399 C = 4853.455070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.047 4.047 3 C -0.156 4.156 4 C 0.486 3.514 5 O -0.644 6.644 6 N -0.559 5.559 7 C -0.320 4.320 8 H 0.072 0.928 9 C -0.016 4.016 10 N -0.923 5.923 11 Si 0.990 3.010 12 H -0.267 1.267 13 H -0.271 1.271 14 H -0.278 1.278 15 C -0.004 4.004 16 C -0.120 4.120 17 C -0.051 4.051 18 C -0.111 4.111 19 C -0.071 4.071 20 C -0.061 4.061 21 N 0.027 4.973 22 O -0.166 6.166 23 O -0.184 6.184 24 H 0.106 0.894 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.392 0.608 31 H 0.275 0.725 32 H 0.172 0.828 33 H 0.191 0.809 34 H 0.189 0.811 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 -2.397 19.065 19.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.051 4.051 3 C -0.213 4.213 4 C 0.274 3.726 5 O -0.533 6.533 6 N -0.194 5.194 7 C -0.449 4.449 8 H 0.090 0.910 9 C -0.215 4.215 10 N -0.565 5.565 11 Si 0.814 3.186 12 H -0.192 1.192 13 H -0.196 1.196 14 H -0.203 1.203 15 C -0.006 4.006 16 C -0.138 4.138 17 C -0.068 4.068 18 C -0.129 4.129 19 C -0.090 4.090 20 C -0.144 4.144 21 N 0.537 4.463 22 O -0.384 6.384 23 O -0.387 6.387 24 H 0.125 0.875 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.227 0.773 31 H 0.085 0.915 32 H 0.189 0.811 33 H 0.209 0.791 34 H 0.206 0.794 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.509 -3.339 19.266 20.314 hybrid contribution 1.025 0.589 -1.729 2.095 sum -4.484 -2.749 17.537 18.309 Atomic orbital electron populations 1.21942 0.89316 1.03378 1.04536 1.19785 0.99596 0.95372 0.90330 1.22346 1.01668 0.93648 1.03668 1.19776 0.81715 0.86612 0.84495 1.90438 1.57666 1.19174 1.86007 1.41692 1.57460 1.12693 1.07586 1.19566 1.41230 0.96377 0.87774 0.90951 1.25974 0.97578 0.96419 1.01498 1.69682 1.49033 1.09411 1.28385 0.84976 0.78451 0.77745 0.77408 1.19217 1.19617 1.20342 1.19596 0.90585 0.95456 0.94984 1.21651 1.01237 0.96533 0.94427 1.22151 0.96619 0.93223 0.94827 1.21704 0.92641 0.98314 1.00200 1.21337 1.03306 0.94052 0.90318 1.21281 0.89350 1.07766 0.95965 1.44183 1.01343 0.98820 1.01927 1.94382 1.15187 1.49580 1.79297 1.94691 1.81003 1.63072 0.99947 0.87549 0.91828 0.91381 0.93650 0.91704 0.89243 0.77322 0.91528 0.81052 0.79141 0.79355 0.82761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 7.12 71.98 0.51 -3.28 16 2 C -0.05 -1.77 0.71 -53.68 -0.04 -1.81 16 3 C -0.16 -5.67 7.64 71.98 0.55 -5.12 16 4 C 0.49 24.83 3.58 87.66 0.31 25.14 16 5 O -0.64 -37.78 15.57 12.49 0.19 -37.58 16 6 N -0.56 -31.12 4.65 -306.98 -1.43 -32.55 16 7 C -0.32 -19.49 9.68 84.04 0.81 -18.67 16 8 H 0.07 4.71 7.16 -2.91 -0.02 4.69 16 9 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 10 N -0.92 -53.10 13.05 21.66 0.28 -52.82 16 11 Si 0.99 45.97 29.55 68.60 2.03 48.00 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 15 C 0.00 -0.15 4.15 -19.87 -0.08 -0.23 16 16 C -0.12 -2.65 8.98 22.27 0.20 -2.45 16 17 C -0.05 -0.73 10.05 22.27 0.22 -0.50 16 18 C -0.11 -1.72 10.05 22.27 0.22 -1.49 16 19 C -0.07 -1.79 9.61 22.27 0.21 -1.58 16 20 C -0.06 -2.15 6.24 36.38 0.23 -1.92 16 21 N 0.03 1.16 3.11 -46.47 -0.14 1.02 16 22 O -0.17 -6.86 18.74 18.89 0.35 -6.51 16 23 O -0.18 -9.55 11.64 24.13 0.28 -9.27 16 24 H 0.11 2.03 7.68 -2.39 -0.02 2.01 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 1.88 7.36 -2.39 -0.02 1.86 16 27 H 0.04 1.87 4.08 -6.33 -0.03 1.85 16 28 H 0.06 2.50 6.34 -2.39 -0.02 2.49 16 29 H 0.09 2.51 8.13 -2.38 -0.02 2.49 16 30 H 0.39 21.22 5.97 -92.70 -0.55 20.66 16 31 H 0.28 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.17 2.84 5.93 -2.91 -0.02 2.82 16 33 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 34 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 35 H 0.15 3.45 7.86 -2.91 -0.02 3.43 16 Total: -1.00 -82.39 294.03 5.77 -76.62 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.57 Total: 25.45 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 3.62 Total: -12.36 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -1.29 Total: -84.35 kcal Atomic # 8 Polarization: -54.19 SS G_CDS: 0.83 Total: -53.36 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -82.39 5.77 -76.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339604396.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.045 kcal (2) G-P(sol) polarization free energy of solvation -82.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds