Wall clock time and date at job start Tue Mar 31 2020 00:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.86746 * 2 1 4 4 O 1.43741 * 109.87913 * 121.00556 * 2 1 3 5 5 C 1.44378 * 106.97484 * 145.94342 * 4 2 1 6 6 C 1.54999 * 103.62828 * 319.85575 * 5 4 2 7 7 C 1.54099 * 109.88072 * 238.83911 * 2 1 3 8 8 H 1.09004 * 110.48846 * 119.86629 * 7 2 1 9 9 S 1.81397 * 110.48670 * 357.21975 * 7 2 1 10 10 C 1.81397 * 103.00082 * 175.00310 * 9 7 2 11 11 C 1.50699 * 109.47347 * 179.97438 * 10 9 7 12 12 C 1.38637 * 119.74835 * 269.72556 * 11 10 9 13 13 C 1.37627 * 120.24456 * 179.71699 * 12 11 10 14 14 C 1.40712 * 119.74754 * 0.57633 * 13 12 11 15 15 C 1.41393 * 120.24462 * 179.67885 * 14 13 12 16 16 H 1.07991 * 120.00305 * 24.39487 * 15 14 13 17 17 C 1.39949 * 119.99715 * 204.39422 * 15 14 13 18 18 N 1.30823 * 120.00004 * 17.86253 * 17 15 14 19 19 Si 1.86799 * 119.99750 * 197.86023 * 17 15 14 20 20 H 1.48495 * 109.47261 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47095 * 120.00310 * 19 17 15 22 22 H 1.48505 * 109.47292 * 240.00049 * 19 17 15 23 23 C 1.40720 * 119.50781 * 359.70089 * 14 13 12 24 24 C 1.37613 * 119.74766 * 359.97438 * 23 14 13 25 25 H 1.08998 * 109.47286 * 300.44855 * 1 2 3 26 26 H 1.09000 * 109.47316 * 60.44949 * 1 2 3 27 27 H 1.08997 * 109.46631 * 180.45083 * 1 2 3 28 28 H 1.09000 * 110.62249 * 78.43722 * 5 4 2 29 29 H 1.09000 * 110.61457 * 201.28044 * 5 4 2 30 30 H 1.08996 * 110.90414 * 155.30381 * 6 5 4 31 31 H 1.08994 * 110.90592 * 278.90629 * 6 5 4 32 32 H 1.09007 * 109.47211 * 299.99872 * 10 9 7 33 33 H 1.09000 * 109.47557 * 60.00150 * 10 9 7 34 34 H 1.07993 * 119.87692 * 359.97438 * 12 11 10 35 35 H 1.08002 * 120.12082 * 180.27843 * 13 12 11 36 36 H 0.97008 * 119.99353 * 179.97438 * 18 17 15 37 37 H 1.08000 * 120.12182 * 180.02562 * 23 14 13 38 38 H 1.07999 * 119.87395 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6963 1.1586 5 6 3.2380 -1.3629 0.7666 6 6 2.9224 -1.8955 -0.6544 7 6 2.0541 -0.7499 -1.2401 8 1 2.6620 -0.0883 -1.8573 9 16 0.6739 -1.4280 -2.2022 10 6 1.4961 -2.1190 -3.6640 11 6 0.4657 -2.7310 -4.5777 12 6 0.1226 -4.0662 -4.4308 13 6 -0.8214 -4.6341 -5.2558 14 6 -1.4299 -3.8574 -6.2590 15 6 -2.3960 -4.4319 -7.1167 16 1 -2.9571 -5.2969 -6.7955 17 6 -2.6250 -3.8796 -8.3821 18 7 -1.7397 -3.0779 -8.9159 19 14 -4.1948 -4.2873 -9.3088 20 1 -5.0258 -5.2091 -8.4935 21 1 -4.9538 -3.0380 -9.5705 22 1 -3.8532 -4.9383 -10.5991 23 6 -1.0695 -2.5047 -6.4024 24 6 -0.1281 -1.9561 -5.5619 25 1 -0.3634 0.5208 0.8859 26 1 -0.3634 0.5068 -0.8940 27 1 -0.3632 -1.0276 0.0081 28 1 4.0686 -0.6577 0.7365 29 1 3.4600 -2.1869 1.4448 30 1 3.8371 -2.0285 -1.2319 31 1 2.3569 -2.8259 -0.6043 32 1 2.0252 -1.3257 -4.1923 33 1 2.2064 -2.8851 -3.3533 34 1 0.5947 -4.6618 -3.6636 35 1 -1.0904 -5.6733 -5.1367 36 1 -1.8983 -2.6954 -9.7931 37 1 -1.5306 -1.8993 -7.1688 38 1 0.1503 -0.9182 -5.6705 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342523814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:02 Heat of formation + Delta-G solvation = -42.781019 kcal Electronic energy + Delta-G solvation = -18594.089051 eV Core-core repulsion = 15719.649794 eV Total energy + Delta-G solvation = -2874.439257 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.47577 -37.65001 -34.03826 -32.44757 -31.74075 -31.10162 -29.34460 -27.58153 -26.03419 -23.93013 -22.29897 -21.23665 -21.04644 -20.00740 -17.36346 -16.81179 -16.25628 -15.75868 -15.37759 -14.94293 -14.36784 -14.12301 -13.88624 -13.79346 -13.32865 -12.71086 -12.63295 -12.30969 -12.15284 -12.03992 -11.92377 -11.66145 -11.42186 -11.22225 -11.11454 -11.04088 -10.85803 -10.66774 -10.35641 -9.84532 -9.72099 -9.47209 -9.39325 -9.13921 -7.52847 -7.33435 -7.23542 -6.84277 -4.41023 1.81338 2.69127 2.96422 3.02804 3.05005 3.09725 3.36217 3.73224 3.87811 4.31228 4.57867 4.66727 4.91665 4.93475 5.06439 5.31736 5.41131 5.49464 5.56272 5.59969 5.61786 5.77037 5.82996 5.92251 5.97854 6.16148 6.29485 6.32491 6.34307 6.76831 6.89890 6.99959 7.20934 7.29201 7.54837 7.77955 7.98969 8.03855 8.22272 8.56912 8.81727 8.89934 10.09448 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043268 B = 0.003326 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.977327 B = 8415.539949 C = 8558.080361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.099 3.901 3 H 0.072 0.928 4 O -0.372 6.372 5 C 0.049 3.951 6 C -0.149 4.149 7 C -0.108 4.108 8 H 0.091 0.909 9 S -0.232 6.232 10 C -0.018 4.018 11 C -0.209 4.209 12 C -0.068 4.068 13 C -0.228 4.228 14 C 0.116 3.884 15 C -0.456 4.456 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.788 5.788 19 Si 0.909 3.091 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.167 4.167 24 C -0.080 4.080 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.281 0.719 37 H 0.119 0.881 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.117 4.814 11.026 13.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 H 0.090 0.910 4 O -0.291 6.291 5 C -0.029 4.029 6 C -0.188 4.188 7 C -0.237 4.237 8 H 0.110 0.890 9 S 0.001 5.999 10 C -0.165 4.165 11 C -0.213 4.213 12 C -0.088 4.088 13 C -0.248 4.248 14 C 0.113 3.887 15 C -0.486 4.486 16 H 0.098 0.902 17 C -0.143 4.143 18 N -0.413 5.413 19 Si 0.733 3.267 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.187 4.187 24 C -0.100 4.100 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.137 0.863 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.020 4.999 11.297 13.742 hybrid contribution 0.930 -0.134 -1.157 1.491 sum 6.950 4.866 10.139 13.221 Atomic orbital electron populations 1.21861 0.92911 1.04277 1.02506 1.22496 0.95957 0.94655 0.82873 0.91027 1.88894 1.39594 1.67797 1.32850 1.23493 0.87645 0.96312 0.95403 1.23629 1.00128 0.98852 0.96212 1.24708 0.99564 0.99593 0.99825 0.89033 1.87503 1.14780 1.74646 1.22940 1.22100 0.98650 1.00828 0.94884 1.18380 1.06320 0.94841 1.01732 1.20355 0.97230 0.93743 0.97488 1.20952 1.02639 0.98435 1.02725 1.17668 0.89675 0.91208 0.90154 1.19696 1.17911 1.12474 0.98486 0.90208 1.25956 0.97118 0.93411 0.97841 1.69837 1.32000 1.23967 1.15450 0.86254 0.81791 0.79431 0.79255 1.18286 1.19598 1.19930 1.21291 1.00903 0.95480 1.01000 1.20509 0.97127 0.97089 0.95265 0.91955 0.89876 0.90466 0.92356 0.88873 0.90193 0.89060 0.91473 0.91485 0.89375 0.88845 0.90777 0.86341 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.29 37.16 0.31 -1.68 16 2 C 0.10 1.20 4.06 -26.16 -0.11 1.10 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 4 O -0.37 -4.83 11.19 -35.23 -0.39 -5.22 16 5 C 0.05 0.50 7.71 38.21 0.29 0.79 16 6 C -0.15 -1.65 6.72 -24.50 -0.16 -1.81 16 7 C -0.11 -1.35 3.55 -24.98 -0.09 -1.44 16 8 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 9 S -0.23 -3.76 17.79 -107.50 -1.91 -5.67 16 10 C -0.02 -0.32 6.02 36.01 0.22 -0.10 16 11 C -0.21 -4.50 5.16 -104.33 -0.54 -5.04 16 12 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 13 C -0.23 -5.55 9.80 -38.87 -0.38 -5.93 16 14 C 0.12 3.06 5.58 -106.83 -0.60 2.47 16 15 C -0.46 -11.93 9.05 -37.74 -0.34 -12.27 16 16 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 17 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 18 N -0.79 -19.95 10.95 55.55 0.61 -19.34 16 19 Si 0.91 18.29 29.59 -169.99 -5.03 13.26 16 20 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 23 C -0.17 -4.30 8.70 -38.87 -0.34 -4.63 16 24 C -0.08 -1.85 9.67 -39.66 -0.38 -2.23 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 1.06 7.43 -51.93 -0.39 0.67 16 27 H 0.08 1.10 7.12 -51.93 -0.37 0.73 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.13 7.84 -51.93 -0.41 0.72 16 32 H 0.07 1.11 8.08 -51.92 -0.42 0.69 16 33 H 0.07 1.08 8.08 -51.92 -0.42 0.66 16 34 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 36 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 37 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 323.87 15.07 4.88 4.88 Total: -1.00 -27.10 323.87 -10.12 -37.22 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.68 Total: 5.79 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: -2.59 Total: -30.91 kcal Atomic # 7 Polarization: -19.95 SS G_CDS: 0.61 Total: -19.34 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.39 Total: -5.22 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 16 Polarization: -3.76 SS G_CDS: -1.91 Total: -5.67 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.10 -10.12 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342523814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.564 kcal (2) G-P(sol) polarization free energy of solvation -27.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds